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2020 – today
- 2024
[j8]Xinyan Wang, Kuo Yang, Ting Jia, Fanghui Gu, Chongyu Wang, Kuan Xu, Zixin Shu, Jianan Xia, Qiang Zhu, Xuezhong Zhou
:
KDGene: knowledge graph completion for disease gene prediction using interactional tensor decomposition. Briefings Bioinform. 25(3) (2024)- [j7]Qiguang Zheng, Qifan Shen, Zixin Shu, Kai Chang, Kunyu Zhong, Yuhang Yan, Jia Ke, Jingjing Huang, Rui Su, Jianan Xia, Xuezhong Zhou:
Deep representation learning from electronic medical records identifies distinct symptom based subtypes and progression patterns for COVID-19 prognosis. Int. J. Medical Informatics 191: 105555 (2024) - [j6]Rui Hua, Xin Dong, Yu Wei, Zixin Shu, Pengcheng Yang, Yunhui Hu, Shuiping Zhou, He Sun, Kaijing Yan, Xijun Yan, Kai Chang, Xiaodong Li, Yuning Bai, Runshun Zhang, Wenjia Wang, Xuezhong Zhou:
Lingdan: enhancing encoding of traditional Chinese medicine knowledge for clinical reasoning tasks with large language models. J. Am. Medical Informatics Assoc. 31(9): 2019-2029 (2024) - [j5]Haoyu Tian, Xiong He, Kuo Yang, Xinyu Dai, Yiming Liu, Fengjin Zhang, Zixin Shu, Qiguang Zheng, Shihua Wang, Jianan Xia, Tiancai Wen, Baoyan Liu, Jian Yu, Xuezhong Zhou:
DAPNet: multi-view graph contrastive network incorporating disease clinical and molecular associations for disease progression prediction. BMC Medical Informatics Decis. Mak. 24(1): 345 (2024) - [i2]Zixin Shu, Rui Hua, Dengying Yan, Chenxia Lu, Ning Xu, Jun Li, Hui Zhu, Jia Zhang, Dan Zhao, Chenyang Hui, Junqiu Ye, Chu Liao, Qi Hao, Wen Ye, Cheng Luo, Xinyan Wang, Chuang Cheng, Xiaodong Li, Baoyan Liu, Xiaji Zhou, Runshun Zhang, Min Xu, Xuezhong Zhou:
ISPO: An Integrated Ontology of Symptom Phenotypes for Semantic Integration of Traditional Chinese Medical Data. CoRR abs/2407.12851 (2024) - 2023
- [i1]Xinyan Wang, Ting Jia, Chongyu Wang, Kuan Xu, Zixin Shu, Kuo Yang, Xuezhong Zhou:
Knowledge Graph Completion based on Tensor Decomposition for Disease Gene Prediction. CoRR abs/2302.09335 (2023) - 2022
- [j4]Kuo Yang, Yi Zheng, Kezhi Lu, Kai Chang, Ning Wang, Zixin Shu, Jian Yu, Baoyan Liu, Zhuye Gao, Xuezhong Zhou:
PDGNet: Predicting Disease Genes Using a Deep Neural Network With Multi-View Features. IEEE ACM Trans. Comput. Biol. Bioinform. 19(1): 575-584 (2022) - [c3]Qiguang Zheng, Qifan Shen, Xin Su, Kuo Yang, Zixin Shu, Xuezhong Zhou:
RESurv: A Deep Survival Analysis Model to Reveal Population Heterogeneity by Individual Risk. BIBM 2022: 2751-2758 - 2021
- [c2]Xin Dong, Yi Zheng, Zixin Shu, Kai Chang, Dengying Yan, Jianan Xia, Qiang Zhu, Kunyu Zhong, Xinyan Wang, Kuo Yang, Xuezhong Zhou:
TCMPR: TCM Prescription recommendation based on subnetwork term mapping and deep learning. BIBM 2021: 3776-3783 - 2020
- [j3]Kezhi Lu, Kuo Yang, Edouard Niyongabo, Zixin Shu, Jingjing Wang, Kai Chang, Qunsheng Zou, Jiyue Jiang, Caiyan Jia, Baoyan Liu, Xuezhong Zhou:
Integrated network analysis of symptom clusters across disease conditions. J. Biomed. Informatics 107: 103482 (2020) - [c1]Yinyan Wang, Kuo Yang, Zixin Shu, Dengying Yan, Xuezhong Zhou:
Network-based gene prediction for TCM symptoms. BIBM 2020: 2847-2854
2010 – 2019
- 2019
- [j2]Zixin Shu, Wenwen Liu, Huikun Wu, Mingzhong Xiao, Deng Wu, Ting Cao, Meng Ren, Junxiu Tao, Chuhua Zhang, Tangqing He, Xiaodong Li, Runshun Zhang, Xuezhong Zhou:
Symptom-based network classification identifies distinct clinical subgroups of liver diseases with common molecular pathways. Comput. Methods Programs Biomed. 174: 41-50 (2019) - [j1]Kuo Yang, Ruyu Wang, Guangming Liu, Zixin Shu, Ning Wang, Runshun Zhang, Jian Yu, Jianxin Chen, Xiaodong Li, Xuezhong Zhou:
HerGePred: Heterogeneous Network Embedding Representation for Disease Gene Prediction. IEEE J. Biomed. Health Informatics 23(4): 1805-1815 (2019)
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