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ORCIDIoannis S. Vlachos
Person information
- affiliation: Harvard University, Medical School, Boston, MA, USA
- affiliation (former): University of Thessaly, Department of Electrical & Computer Engineerin, Volos, Greece
- affiliation (former): University of Athens, Medical School, Athens, Greece
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2020 – today
- 2024
[j16]Georg Hahn, Dmitry Prokopenko, Julian Hecker
, Sharon Marie Lutz, Kristina Mullin, Leinal Sejour, Winston Hide, Ioannis S. Vlachos, Stacia Desantis, Rudolph E. Tanzi, Christoph Lange:
Prediction of disease-free survival for precision medicine using cooperative learning on multi-omic data. Briefings Bioinform. 25(4) (2024)- 2023
- [j15]Pourya Naderi Yeganeh, Yue Y. Teo, Dimitra Karagkouni, Yered Pita-Juárez, Sarah L. Morgan, Frank J. Slack, Ioannis S. Vlachos, Winston A. Hide:
PanomiR: a systems biology framework for analysis of multi-pathway targeting by miRNAs. Briefings Bioinform. 24(6) (2023) - 2022
- [j14]Ioannis Kavakiotis, Athanasios Alexiou, Spyros Tastsoglou, Ioannis S. Vlachos, Artemis G. Hatzigeorgiou:
DIANA-miTED: a microRNA tissue expression database. Nucleic Acids Res. 50(D1): 1055-1061 (2022) - 2020
- [j13]Thomas Desvignes, Phillipe Loher, Karen Eilbeck, Jeffery Ma, Gianvito Urgese, Bastian Fromm, Jason Sydes, Ernesto Aparicio-Puerta, Víctor Barrera, Roderic Espín, Florian Thibord, Xavier Bofill-De Ros, Eric Londin, Aristeidis G. Telonis, Elisa Ficarra, Marc R. Friedländer, John H. Postlethwait, Isidore Rigoutsos, Michael Hackenberg, Ioannis S. Vlachos, Marc K. Halushka, Lorena Pantano:
Unification of miRNA and isomiR research: the mirGFF3 format and the mirtop API. Bioinform. 36(3): 698-703 (2020)
2010 – 2019
- 2018
- [j12]Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou:
DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA-gene interactions. Nucleic Acids Res. 46(Database-Issue): D239-D245 (2018) - 2017
- [j11]Konstantinos Zagganas, Thanasis Vergoulis, Maria D. Paraskevopoulou, Ioannis S. Vlachos, Spiros Skiadopoulos, Theodore Dalamagas:
BUFET: boosting the unbiased miRNA functional enrichment analysis using bitsets. BMC Bioinform. 18(1): 399:1-399:8 (2017) - 2016
- [j10]Georgios K. Georgakilas, Ioannis S. Vlachos, Konstantinos Zagganas, Thanasis Vergoulis, Maria D. Paraskevopoulou, Ilias Kanellos, Panayiotis Tsanakas, Dimitris Dellis, Athanasios Fevgas, Theodore Dalamagas, Artemis G. Hatzigeorgiou:
DIANA-miRGen v3.0: accurate characterization of microRNA promoters and their regulators. Nucleic Acids Res. 44(Database-Issue): 190-195 (2016) - [j9]Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios K. Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, Artemis G. Hatzigeorgiou:
DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts. Nucleic Acids Res. 44(Database-Issue): 231-238 (2016) - [j8]Ioannis S. Vlachos, Thanasis Vergoulis, Maria D. Paraskevopoulou, Filopoimin Lykokanellos, Georgios K. Georgakilas, Penny Georgiou, Serafeim Chatzopoulos, Dimitra Karagkouni, Foteini Christodoulou, Theodore Dalamagas, Artemis G. Hatzigeorgiou:
DIANA-mirExTra v2.0: Uncovering microRNAs and transcription factors with crucial roles in NGS expression data. Nucleic Acids Res. 44(Webserver-Issue): W128-W134 (2016) - 2015
- [j7]Ioannis S. Vlachos, Maria D. Paraskevopoulou, Dimitra Karagkouni, Georgios K. Georgakilas, Thanasis Vergoulis, Ilias Kanellos, Ioannis-Laertis Anastasopoulos, Sofia Maniou, Konstantina Karathanou, Despina Kalfakakou, Athanasios Fevgas, Theodore Dalamagas, Artemis G. Hatzigeorgiou:
DIANA-TarBase v7.0: indexing more than half a million experimentally supported miRNA: mRNA interactions. Nucleic Acids Res. 43(Database-Issue): 153-159 (2015) - [j6]Ioannis S. Vlachos, Konstantinos Zagganas, Maria D. Paraskevopoulou, Georgios K. Georgakilas, Dimitra Karagkouni, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou:
DIANA-miRPath v3.0: deciphering microRNA function with experimental support. Nucleic Acids Res. 43(Webserver-Issue): W460-W466 (2015) - [c1]Rodothea-Myrsini Tsoupidi, Ilias Kanellos, Thanasis Vergoulis, Ioannis S. Vlachos, Artemis G. Hatzigeorgiou, Theodore Dalamagas:
TarMiner: automatic extraction of miRNA targets from literature. SSDBM 2015: 12:1-12:5 - 2014
- [j5]Agusti Solanas, Constantinos Patsakis, Mauro Conti, Ioannis S. Vlachos, Victoria Ramos, Francisco Falcone, Octavian Postolache, Pablo A. Pérez-Martínez, Roberto Di Pietro, Despina N. Perrea, Antoni Martínez-Ballesté:
Smart health: A context-aware health paradigm within smart cities. IEEE Commun. Mag. 52(8): 74-81 (2014) - 2013
- [j4]Maria D. Paraskevopoulou, Georgios K. Georgakilas, Nikos Kostoulas, Ioannis S. Vlachos, Thanasis Vergoulis, Martin Reczko, Christos Filippidis, Theodore Dalamagas, Artemis G. Hatzigeorgiou:
DIANA-microT web server v5.0: service integration into miRNA functional analysis workflows. Nucleic Acids Res. 41(Webserver-Issue): 169-173 (2013) - [j3]Maria D. Paraskevopoulou, Ioannis S. Vlachos, Emmanouil Athanasiadis, George M. Spyrou:
BiDaS: a web-based Monte Carlo BioData Simulator based on sequence/feature characteristics. Nucleic Acids Res. 41(Webserver-Issue): 582-586 (2013) - 2012
- [j2]Thanasis Vergoulis, Ioannis S. Vlachos, Panagiotis Alexiou, George Georgakilas, Manolis Maragkakis, Martin Reczko, Stefanos Gerangelos, Nectarios Koziris, Theodore Dalamagas, Artemis G. Hatzigeorgiou:
TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support. Nucleic Acids Res. 40(Database-Issue): 222-229 (2012) - [j1]Ioannis S. Vlachos, Nikos Kostoulas, Thanasis Vergoulis, Georgios K. Georgakilas, Martin Reczko, Manolis Maragkakis, Maria D. Paraskevopoulou, Kostantinos Prionidis, Theodore Dalamagas, Artemis G. Hatzigeorgiou:
DIANA miRPath v.2.0: investigating the combinatorial effect of microRNAs in pathways. Nucleic Acids Res. 40(Web-Server-Issue): 498-504 (2012)
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