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2020 – today
- 2021
[d1]Gaurav Vaidya, Nico Cellinese
, Hilmar Lapp:
JPhyloRef: a tool for testing and resolving phyloreferences. J. Open Source Softw. 6(64): 3374 (2021)- [c11]Aaron Eberhart, David Carral, Pascal Hitzler, Hilmar Lapp, Sebastian Rudolph:
Seed Patterns for Modeling Trees. WOP (Book) 2021: 48-67
2010 – 2019
- 2018
- [j12]Wasila M. Dahdul, Prashanti Manda, Hong Cui, James P. Balhoff, T. Alexander Dececchi, Nizar Ibrahim, Hilmar Lapp, Todd J. Vision, Paula M. Mabee:
Annotation of phenotypes using ontologies: a gold standard for the training and evaluation of natural language processing systems. Database J. Biol. Databases Curation 2018: bay110 (2018) - [c10]Paula M. Mabee, James P. Balhoff, Wasila M. Dahdul, Hilmar Lapp, Christopher J. Mungall, Todd J. Vision:
Reasoning over Anatomical Homology in the Phenoscape KB. ICBO 2018 - [p2]Ian Braun, James P. Balhoff, Tanya Z. Berardini, Laurel Cooper, Georgios V. Gkoutos, Lisa C. Harper, Eva Huala, Pankaj Jaiswal, Toni Kazic, Hilmar Lapp, James A. Macklin, Chelsea D. Specht, Todd J. Vision, Ramona L. Walls, Carolyn J. Lawrence-Dill:
'Computable' Phenotypes Enable Comparative and Predictive Phenomics Among Plant Species and Across Domains of Life. Application of Semantic Technology in Biodiversity Science 2018: 187-205 - [p1]Paula M. Mabee, Wasila M. Dahdul, James P. Balhoff, Hilmar Lapp, Prashanti Manda, Josef C. Uyeda, Todd J. Vision, Monte Westerfield:
Phenoscape: Semantic analysis of organismal traits and genes yields insights in evolutionary biology. Application of Semantic Technology in Biodiversity Science 2018: 207-224 - 2017
- [c9]David Carral, Pascal Hitzler, Hilmar Lapp, Sebastian Rudolph:
On the Ontological Modeling of Trees. WOP@ISWC 2017 - [i4]David Carral, Pascal Hitzler, Hilmar Lapp, Sebastian Rudolph:
On the Ontological Modeling of Trees. CoRR abs/1710.05096 (2017) - 2016
- [j11]Nomi L. Harris, Peter J. A. Cock, Hilmar Lapp, Brad Chapman, Rob Davey, Christopher J. Fields, Karsten Hokamp, Monica C. Munoz-Torres:
The 2015 Bioinformatics Open Source Conference (BOSC 2015). PLoS Comput. Biol. 12(2) (2016) - [c8]Prashanti Manda, Christopher J. Mungall, James P. Balhoff, Hilmar Lapp, Todd J. Vision:
Investigating the Importance of Anatomical Homology for Cross-Species Phenotype Comparisons Using Semantic Similarity. PSB 2016: 132-143 - 2015
- [j10]Wasila M. Dahdul, T. Alexander Dececchi, Nizar Ibrahim, Hilmar Lapp, Paula M. Mabee:
Moving the mountain: analysis of the effort required to transform comparative anatomy into computable anatomy. Database J. Biol. Databases Curation 2015 (2015) - [j9]Nomi L. Harris, Peter J. A. Cock, Brad A. Chapman, Jeremy Goecks, Hans-Rudolf Hotz, Hilmar Lapp:
The Bioinformatics Open Source Conference (BOSC) 2013. Bioinform. 31(2): 299-300 (2015) - 2014
- [j8]James P. Balhoff, Wasila M. Dahdul, Thomas Dececchi, Hilmar Lapp, Paula M. Mabee, Todd J. Vision:
Annotation of phenotypic diversity: decoupling data curation and ontology curation using Phenex. J. Biomed. Semant. 5: 45 (2014) - [i3]Daniel S. Katz, Sou-Cheng T. Choi, Hilmar Lapp, Ketan Maheshwari, Frank Löffler, Matthew J. Turk, Marcus D. Hanwell, Nancy Wilkins-Diehr, James Hetherington, James Howison, Shel Swenson, Gabrielle Allen, Anne C. Elster, G. Bruce Berriman, Colin C. Venters:
Summary of the First Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE1). CoRR abs/1404.7414 (2014) - [i2]James P. Balhoff, T. Alexander Dececchi, Paula M. Mabee, Hilmar Lapp:
Presence-absence reasoning for evolutionary phenotypes. CoRR abs/1410.3862 (2014) - 2013
- [j7]Peter E. Midford, Thomas Dececchi, James P. Balhoff, Wasila M. Dahdul, Nizar Ibrahim, Hilmar Lapp, John G. Lundberg, Paula M. Mabee, Paul C. Sereno, Monte Westerfield, Todd J. Vision, David C. Blackburn:
The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes. J. Biomed. Semant. 4: 34 (2013) - [j6]Arlin Stoltzfus, Hilmar Lapp, Naim Matasci, Helena F. Deus, Brian Sidlauskas, Christian M. Zmasek, Gaurav Vaidya, Enrico Pontelli, Karen Cranston, Rutger A. Vos, Campbell O. Webb, Luke J. Harmon, Meg Pirrung, Brian C. O'Meara, Matthew W. Pennell, Siavash Mirarab, Michael S. Rosenberg, James P. Balhoff, Holly M. Bik, Tracy A. Heath, Peter E. Midford, Joseph W. Brown, Emily Jane McTavish, Jeet Sukumaran, Mark Westneat, Michael E. Alfaro, Aaron Steele, Greg Jordan:
Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient. BMC Bioinform. 14: 158 (2013) - [i1]Daisie Huang, Hilmar Lapp:
Software Engineering as Instrumentation for the Long Tail of Scientific Software. CoRR abs/1309.1806 (2013) - 2012
- [j5]Andreas Prlic, Hilmar Lapp:
The PLOS Computational Biology Software Section. PLoS Comput. Biol. 8(11) (2012) - 2011
- [j4]Sook Jung, Naama Menda, Seth Redmond, Robert M. Buels, Maren Friesen, Yuri R. Bendaña, Lacey-Anne Sanderson, Hilmar Lapp, Taein Lee, Bob MacCallum, Kirstin E. Bett, Scott Cain, Dave Clements, Lukas A. Mueller, Dorrie Main:
The Chado Natural Diversity module: a new generic database schema for large-scale phenotyping and genotyping data. Database J. Biol. Databases Curation 2011 (2011) - [c7]James P. Balhoff, Wasila M. Dahdul, Hilmar Lapp, Peter E. Midford, Todd J. Vision, Monte Westerfield, Paula M. Mabee:
Employing Reasoning within the Phenoscape Knowledgebase. ICBO 2011 - [c6]James P. Balhoff, Peter E. Midford, Hilmar Lapp:
Integrating Anatomy and Phenotype Ontologies with Taxonomic Hierarchies. ICBO 2011 - [c5]Wasila M. Dahdul, James P. Balhoff, Hilmar Lapp, Peter E. Midford, Todd J. Vision, Monte Westerfield, Paula M. Mabee:
Phenoscape: Use Cases and Anatomy Ontology Requirements for Linking Evolutionary and Model Organism Phenotypes. ICBO 2011 - [c4]Todd J. Vision, Judith A. Blake, Hilmar Lapp, Paula M. Mabee, Monte Westerfield:
Similarity Between Semantic Description Sets: Addressing Needs Beyond Data Integration. LISC 2011 - 2010
- [j3]Toshiaki Katayama, Kazuharu Arakawa, Mitsuteru Nakao, Keiichiro Ono, Kiyoko F. Aoki-Kinoshita, Yasunori Yamamoto, Atsuko Yamaguchi, Shuichi Kawashima, Hong-Woo Chun, Jan Aerts, Bruno Aranda, Lord H. Barboza, Raoul Jean Pierre Bonnal, Richard M. Bruskiewich, Jan Christian Bryne, José María Fernández, Akira Funahashi, Paul M. K. Gordon, Naohisa Goto, Andreas Groscurth, Alex Gutteridge, Richard C. G. Holland, Yoshinobu Kano, Edward A. Kawas, Arnaud Kerhornou, Eri Kibukawa, Akira R. Kinjo, Michael Kuhn, Hilmar Lapp, Heikki Lehväslaiho, Hiroyuki Nakamura, Yasukazu Nakamura, Tatsuya Nishizawa, Chikashi Nobata, Tamotsu Noguchi, Thomas M. Oinn, Shinobu Okamoto, Stuart Owen, Evangelos Pafilis, Matthew R. Pocock, Pjotr Prins, René Ranzinger, Florian Reisinger, Lukasz Salwínski, Mark J. Schreiber, Martin Senger, Yasumasa Shigemoto, Daron M. Standley, Hideaki Sugawara, Toshiyuki Tashiro, Oswaldo Trelles, Rutger A. Vos, Mark D. Wilkinson, William S. York, Christian M. Zmasek, Kiyoshi Asai, Toshihisa Takagi:
The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. J. Biomed. Semant. 1: 8 (2010)
2000 – 2009
- 2006
- [j2]Jason E. Stajich, Hilmar Lapp:
Open source tools and toolkits for bioinformatics: significance, and where are we? Briefings Bioinform. 7(3): 287-296 (2006) - 2003
- [j1]Norbert Brändle, Horst Bischof, Hilmar Lapp:
Robust DNA microarray image analysis. Mach. Vis. Appl. 15(1): 11-28 (2003) - 2000
- [c3]Horng-Yang Chen, Norbert Brändle, Horst Bischof, Hilmar Lapp:
Robust Spot Fitting for Genetic Spot Array Images. ICIP 2000: 412-415 - [c2]Norbert Brändle, Horng-Yang Chen, Horst Bischof, Hilmar Lapp:
Robust Parametric and Semi-Parametric Spot Fitting for Spot Array Images. ISMB 2000: 46-56
1990 – 1999
- 1999
- [c1]Norbert Brändle, Hilmar Lapp, Horst Bischof:
Automatic Grid Fitting for Genetic Spot Array Images Containing Guide Spots. CAIP 1999: 357-366
Coauthor Index
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