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Derek Jones
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2020 – today
- 2023
- [j9]Garrett A. Stevenson, Dan Kirshner, Brian J. Bennion, Yue Yang, Xiaohua Zhang, Adam T. Zemla, Marisa W. Torres, Aidan Epstein, Derek Jones, Hyojin Kim, W. F. Drew Bennett, Sergio Ernesto Wong, Jonathan E. Allen, Felice C. Lightstone:
Clustering Protein Binding Pockets and Identifying Potential Drug Interactions: A Novel Ligand-Based Featurization Method. J. Chem. Inf. Model. 63(21): 6655-6666 (2023) - [i3]Derek Jones, Jonathan E. Allen, Xiaohua Zhang, Behnam Khaleghi, Jaeyoung Kang, Weihong Xu, Niema Moshiri, Tajana Simunic Rosing:
HD-Bind: Encoding of Molecular Structure with Low Precision, Hyperdimensional Binary Representations. CoRR abs/2303.15604 (2023) - 2022
- [p1]Lay-Wah Carolina Ching-Chiang, Juan Manuel Fernández-Cárdenas, Nicole Lotz, Noé Abraham González-Nieto, Mark Gaved, Derek Jones, Alejandra Díaz de León, Rafael Machado:
From Digital Divide to Digital Discovery: Re-thinking Online Learning and Interactions in Marginalized Communities. Innovation Practices for Digital Transformation in the Global South 2022: 34-58 - 2021
- [j8]Sam Ade Jacobs, Tim Moon, Kevin McLoughlin, Derek Jones, David Hysom, Dong H. Ahn, John C. Gyllenhaal, Pythagoras Watson, Felice C. Lightstone, Jonathan E. Allen, Ian Karlin, Brian Van Essen:
Enabling rapid COVID-19 small molecule drug design through scalable deep learning of generative models. Int. J. High Perform. Comput. Appl. 35(5) (2021) - [j7]Derek Jones, Hyojin Kim, Xiaohua Zhang, Adam T. Zemla, Garrett Stevenson, W. F. Drew Bennett, Daniel A. Kirshner, Sergio Ernesto Wong, Felice C. Lightstone, Jonathan E. Allen:
Improved Protein-Ligand Binding Affinity Prediction with Structure-Based Deep Fusion Inference. J. Chem. Inf. Model. 61(4): 1583-1592 (2021) - [c7]Garrett A. Stevenson, Derek Jones, Hyojin Kim, W. F. Drew Bennett, Brian J. Bennion, Monica Borucki, Feliza Bourguet, Aidan Epstein, Magdalena Franco, Brooke Harmon, Stewart He, Max P. Katz, Daniel A. Kirshner, Victoria Lao, Edmond Y. Lau, Jacky Lo, Kevin McLoughlin, Richard Mosesso, Deepa K. Murugesh, Oscar A. Negrete, Edwin A. Saada, Brent Segelke, Maxwell Stefan, Marisa W. Torres, Dina Weilhammer, Sergio Ernesto Wong, Yue Yang, Adam T. Zemla, Xiaohua Zhang, Fangqiang Zhu, Felice C. Lightstone, Jonathan E. Allen:
High-throughput virtual screening of small molecule inhibitors for SARS-CoV-2 protein targets with deep fusion models. SC 2021: 74 - [i2]Garrett A. Stevenson, Derek Jones, Hyojin Kim, W. F. Drew Bennett, Brian J. Bennion, Monica Borucki, Feliza Bourguet, Aidan Epstein, Magdalena Franco, Brooke Harmon, Stewart He, Max P. Katz, Daniel A. Kirshner, Victoria Lao, Edmond Y. Lau, Jacky Lo, Kevin McLoughlin, Richard Mosesso, Deepa K. Murugesh, Oscar A. Negrete, Edwin A. Saada, Brent Segelke, Maxwell Stefan, Marisa W. Torres, Dina Weilhammer, Sergio Ernesto Wong, Yue Yang, Adam T. Zemla, Xiaohua Zhang, Fangqiang Zhu, Felice C. Lightstone, Jonathan E. Allen:
High-Throughput Virtual Screening of Small Molecule Inhibitors for SARS-CoV-2 Protein Targets with Deep Fusion Models. CoRR abs/2104.04547 (2021) - 2020
- [j6]Fangqiang Zhu, Xiaohua Zhang, Jonathan E. Allen, Derek Jones, Felice C. Lightstone:
Binding Affinity Prediction by Pairwise Function Based on Neural Network. J. Chem. Inf. Model. 60(6): 2766-2772 (2020) - [j5]W. F. Drew Bennett, Stewart He, Camille L. Bilodeau, Derek Jones, Delin Sun, Hyojin Kim, Jonathan E. Allen, Felice C. Lightstone, Helgi I. Ingólfsson:
Predicting Small Molecule Transfer Free Energies by Combining Molecular Dynamics Simulations and Deep Learning. J. Chem. Inf. Model. 60(11): 5375-5381 (2020) - [i1]Derek Jones, Hyojin Kim, Xiaohua Zhang, Adam T. Zemla, Garrett Stevenson, William D. Bennett, Dan Kirshner, Sergio Ernesto Wong, Felice C. Lightstone, Jonathan E. Allen:
Improved Protein-ligand Binding Affinity Prediction with Structure-Based Deep Fusion Inference. CoRR abs/2005.07704 (2020)
2010 – 2019
- 2019
- [c6]Brian Lee, Andrew Jackson, Tom Madams, Seth Troisi, Derek Jones:
Minigo: A Case Study in Reproducing Reinforcement Learning Research. RML@ICLR 2019 - 2018
- [c5]Gowtham Krishnan Murugesan, Behrouz Saghafi, Elizabeth M. Davenport, Benjamin C. Wagner, Jillian Urban-Hobson, Mireille Kelley, Derek Jones, Alex Powers, Christopher T. Whitlow, Joel D. Stitzel, Joseph A. Maldjian, Albert Montillo:
Single season changes in resting state network power and the connectivity between regions distinguish head impact exposure level in high school and youth football players. Medical Imaging: Computer-Aided Diagnosis 2018: 105750F - [c4]Behrouz Saghafi, Gowtham Murugesan, Elizabeth M. Davenport, Benjamin C. Wagner, Jillian Urban, Mireille Kelley, Derek Jones, Alexander Powers, Christopher T. Whitlow, Joel D. Stitzel, Joseph A. Maldjian, Albert Montillo:
Quantifying the association between white matter integrity changes and subconcussive head impact exposure from a single season of youth and high school football using 3D convolutional neural networks. Medical Imaging: Computer-Aided Diagnosis 2018: 105750E - 2017
- [c3]Gowtham Murugesan, Afarin Famili, Elizabeth M. Davenport, Benjamin C. Wagner, Jillian Urban, Mireille Kelley, Derek Jones, Christopher T. Whitlow, Joel D. Stitzel, Joseph A. Maldjian, Albert Montillo:
Changes in resting state MRI networks from a single season of football distinguishes controls, low, and high head impact exposure. ISBI 2017: 464-467 - 2015
- [j4]Derek Jones, Anthony F. Beavers:
Editors' introduction. J. Exp. Theor. Artif. Intell. 27(1): 1-2 (2015) - 2014
- [j3]Anthony F. Beavers, Derek Jones:
Philosophy in the Age of Information: A Symposium on Luciano Floridi's The Philosophy of Information. Minds Mach. 24(1): 1-3 (2014) - 2013
- [j2]Derek Jones, Emma Dewberry:
Building Information Modelling Design Ecologies: A New Model? Int. J. 3 D Inf. Model. 2(1): 53-64 (2013) - [c2]Gemma Wilson, Derek Jones, Patricia Schofield, Denis Martin:
The use of the Sensecam to explore daily functioning of older adults with chronic pain. SenseCam 2013: 76-77 - 2012
- [j1]Derek Jones:
What do animat models model? J. Exp. Theor. Artif. Intell. 24(4): 475-488 (2012)
2000 – 2009
- 2004
- [c1]Nicholas Lange, Derek Jones, Carlo Pierpaoli:
A Closed-Form Method for Improving Inter-Subject Coherence in Diffusion Tensor Magnetic Resonance Imaging. ISBI 2004: 1506-1509
Coauthor Index
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