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W. Evan Johnson
Person information
- affiliation: Boston University, School of Public Health, Department of Biostatistics, MA, USA
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2020 – today
- 2023
- [j11]Dakota Y. Hawkins, Daniel T. Zuch
, James Huth, Nahomie Rodriguez-Sastre, Kelley R. McCutcheon, Abigail Glick, Alexandra T. Lion, Christopher F. Thomas, Abigail E. Descoteaux, William Evan Johnson
, Cynthia A Bradham:
ICAT: a novel algorithm to robustly identify cell states following perturbations in single-cell transcriptomes. Bioinform. 39(5) (2023) - [j10]Yichen Wang
, Irzam Sarfraz, Nida Pervaiz, Rui Hong, Yusuke Koga, Vidya Akavoor, Xinyun Cao, Salam Alabdullatif, Syed Ali Zaib, Zhe Wang
, Frederick Jansen, Masanao Yajima, W. Evan Johnson, Joshua D. Campbell
:
Interactive analysis of single-cell data using flexible workflows with SCTK2. Patterns 4(8): 100814 (2023) - 2021
- [j9]Yuqing Zhang, Prasad Patil, W. Evan Johnson
, Giovanni Parmigiani:
Robustifying genomic classifiers to batch effects via ensemble learning. Bioinform. 37(11): 1521-1527 (2021)
2010 – 2019
- 2019
- [j8]Zhe Wang
, Junming Hu, W. Evan Johnson
, Joshua D. Campbell:
scruff: an R/Bioconductor package for preprocessing single-cell RNA-sequencing data. BMC Bioinform. 20(1): 222:1-222:9 (2019) - 2018
- [j7]Yuqing Zhang, David F. Jenkins
, Solaiappan Manimaran, W. Evan Johnson
:
Alternative empirical Bayes models for adjusting for batch effects in genomic studies. BMC Bioinform. 19(1): 262:1-262:15 (2018) - 2016
- [j6]Solaiappan Manimaran, Heather Marie Selby, Kwame Okrah, Claire Ruberman, Jeffrey T. Leek, John Quackenbush
, Benjamin Haibe-Kains
, Héctor Corrada Bravo, W. Evan Johnson
:
BatchQC: interactive software for evaluating sample and batch effects in genomic data. Bioinform. 32(24): 3836-3838 (2016) - 2015
- [j5]Ying Shen, Mumtahena Rahman
, Stephen R. Piccolo, Daniel Gusenleitner, Nader N. El-Chaar, Luis Cheng, Stefano Monti
, Andrea H. Bild, W. Evan Johnson
:
ASSIGN: context-specific genomic profiling of multiple heterogeneous biological pathways. Bioinform. 31(11): 1745-1753 (2015) - [j4]Mumtahena Rahman
, Laurie K. Jackson, W. Evan Johnson
, Dean Y. Li, Andrea H. Bild, Stephen R. Piccolo:
Alternative preprocessing of RNA-Sequencing data in The Cancer Genome Atlas leads to improved analysis results. Bioinform. 31(22): 3666-3672 (2015) - 2013
- [j3]Changjin Hong, Nathan L. Clement, Spencer Clement, Saher Sue Hammoud, Douglas T. Carrell, Bradley R. Cairns, Quinn Snell, Mark J. Clement, William Evan Johnson
:
Probabilistic alignment leads to improved accuracy and read coverage for bisulfite sequencing data. BMC Bioinform. 14: 337 (2013) - 2012
- [j2]Jeffrey T. Leek, W. Evan Johnson
, Hilary S. Parker, Andrew E. Jaffe
, John D. Storey
:
The sva package for removing batch effects and other unwanted variation in high-throughput experiments. Bioinform. 28(6): 882-883 (2012) - [c2]Nathan L. Clement, Brent A. Shepherd, Paul M. Bodily, Sukhbat Tumur-Ochir, Younghoon Gim, Quinn Snell, Mark J. Clement, W. Evan Johnson:
Parallel Pair-HMM SNP Detection. IPDPS Workshops 2012: 675-683 - 2011
- [c1]Nathan L. Clement, Mark J. Clement, Quinn Snell, W. Evan Johnson:
Parallel Mapping Approaches for GNUMAP. IPDPS Workshops 2011: 435-443 - 2010
- [j1]Nathan L. Clement, Quinn Snell, Mark J. Clement, Peter C. Hollenhorst, Jahnvi Purwar, Barbara J. Graves, Bradley R. Cairns, W. Evan Johnson
:
The GNUMAP algorithm: unbiased probabilistic mapping of oligonucleotides from next-generation sequencing. Bioinform. 26(1): 38-45 (2010)
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