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Matteo Chiara
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2020 – today
- 2024
- [c1]Anna Bernasconi, Matteo Chiara, Tommaso Alfonsi, Stefano Ceri:
SENSIBLE: Implementing Data-Driven Early Warning Systems for Future Viral Epidemics. CAiSE Research Projects Exhibition 2024: 18-25 - [d4]Tommaso Alfonsi
, Anna Bernasconi
, Matteo Chiara
, Stefano Ceri
:
Supporting data and code for "Data-driven recombination detection in viral genomes". Version 3.3.3-v3. Zenodo, 2024 [all versions] - [d3]Tommaso Alfonsi
, Anna Bernasconi
, Matteo Chiara
, Stefano Ceri
:
Supporting data and code for "Data-driven recombination detection in viral genomes". Version 4. Zenodo, 2024 [all versions] - 2023
- [j9]Pietro Pinoli
, Arif Canakoglu
, Stefano Ceri
, Matteo Chiara
, Erika Ferrandi
, Luca Minotti, Anna Bernasconi
:
VariantHunter: a method and tool for fast detection of emerging SARS-CoV-2 variants. Database J. Biol. Databases Curation 2023 (2023) - [j8]Claudio Lo Giudice
, Federico Zambelli
, Matteo Chiara
, Giulio Pavesi
, Marco Antonio Tangaro, Ernesto Picardi
, Graziano Pesole
:
UTRdb 2.0: a comprehensive, expert curated catalog of eukaryotic mRNAs untranslated regions. Nucleic Acids Res. 51(D1): 337-344 (2023) - [d2]Tommaso Alfonsi
, Anna Bernasconi
, Matteo Chiara
, Stefano Ceri
:
Supporting data and code for "Data-driven recombination detection in viral genomes". Version 3.3.3. Zenodo, 2023 [all versions] - [d1]Tommaso Alfonsi
, Anna Bernasconi
, Matteo Chiara
, Stefano Ceri
:
Supporting data and code for "Data-driven recombination detection in viral genomes". Version 3.3.3-v2. Zenodo, 2023 [all versions] - 2022
- [j7]Luca Cilibrasi, Pietro Pinoli
, Anna Bernasconi
, Arif Canakoglu
, Matteo Chiara
, Stefano Ceri
:
ViruClust: direct comparison of SARS-CoV-2 genomes and genetic variants in space and time. Bioinform. 38(7): 1988-1994 (2022) - 2021
- [j6]Matteo Chiara
, Anna Maria D'Erchia, Carmela Gissi, Caterina Manzari, Antonio Parisi, Nicoletta Resta, Federico Zambelli
, Ernesto Picardi
, Giulio Pavesi
, David Stephen Horner, Graziano Pesole
:
Next generation sequencing of SARS-CoV-2 genomes: challenges, applications and opportunities. Briefings Bioinform. 22(2): 616-630 (2021) - [j5]Matteo Chiara
, Federico Zambelli
, Marco Antonio Tangaro
, Pietro Mandreoli
, David Stephen Horner, Graziano Pesole
:
CorGAT: a tool for the functional annotation of SARS-CoV-2 genomes. Bioinform. 36(22-23): 5522-5523 (2021) - [j4]Matteo Chiara
, Pietro Mandreoli
, Marco Antonio Tangaro
, Anna Maria D'Erchia, Sandro Sorrentino, Cinzia Forleo, David Stephen Horner, Federico Zambelli
, Graziano Pesole
:
VINYL: Variant prIoritizatioN bY survivaL analysis. Bioinform. 36(24): 5590-5599 (2021) - [j3]Marco Antonio Tangaro
, Pietro Mandreoli
, Matteo Chiara, Giacinto Donvito
, Marica Antonacci, Antonio Parisi, Angelica Bianco
, Angelo Romano
, Daniela Manila Bianchi, Davide Cangelosi
, Paolo Uva
, Ivan Molineris, Vladimir Nosi, Raffaele A. Calogero
, Luca Alessandrì
, Elena Pedrini
, Marina Mordenti, Emanuele Bonetti
, Luca Sangiorgi
, Graziano Pesole, Federico Zambelli
:
Laniakea@ReCaS: exploring the potential of customisable Galaxy on-demand instances as a cloud-based service. BMC Bioinform. 22-S(15): 544 (2021) - 2020
- [j2]Matteo Chiara
, Federico Zambelli
, Ernesto Picardi
, David Stephen Horner
, Graziano Pesole
:
Critical assessment of bioinformatics methods for the characterization of pathological repeat expansions with single-molecule sequencing data. Briefings Bioinform. 21(6): 1971-1986 (2020) - [j1]Tiziana Castrignanò, Silvia Gioiosa
, Tiziano Flati, Mirko Cestari
, Ernesto Picardi, Matteo Chiara
, Maddalena Fratelli, Stefano Amente
, Marco Cirilli, Marco Antonio Tangaro
, Giovanni Chillemi
, Graziano Pesole, Federico Zambelli
:
ELIXIR-IT HPC@CINECA: high performance computing resources for the bioinformatics community. BMC Bioinform. 21-S(10): 352 (2020)
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last updated on 2024-08-05 20:22 CEST by the dblp team
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