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ORCIDYanyi Chu
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2020 – today
- 2024
[j11]Yanyi Chu, Dan Yu, Yupeng Li, Kaixuan Huang, Yue Shen, Le Cong
, Jason Zhang, Mengdi Wang:
A 5′ UTR language model for decoding untranslated regions of mRNA and function predictions. Nat. Mac. Intell. 6(4): 449-460 (2024)- [i1]Kaixuan Huang, Yukang Yang, Kaidi Fu, Yanyi Chu, Le Cong, Mengdi Wang:
Latent Diffusion Models for Controllable RNA Sequence Generation. CoRR abs/2409.09828 (2024) - 2022
- [j10]Shenggeng Lin, Yanjing Wang, Lingfeng Zhang, Yanyi Chu, Yatong Liu, Yitian Fang, Mingming Jiang, Qiankun Wang, Bowen Zhao, Yi Xiong, Dong-Qing Wei:
MDF-SA-DDI: predicting drug-drug interaction events based on multi-source drug fusion, multi-source feature fusion and transformer self-attention mechanism. Briefings Bioinform. 23(1) (2022) - [j9]Jianmin Wang, Yanyi Chu, Jiashun Mao, Hyeon-Nae Jeon, Haiyan Jin, Amir Zeb, Yuil Jang, Kwang-Hwi Cho, Tao Song, Kyoung Tai No:
De novo molecular design with deep molecular generative models for PPI inhibitors. Briefings Bioinform. 23(4) (2022) - [j8]Yanyi Chu, Yan Zhang, Qiankun Wang, Lingfeng Zhang, Xuhong Wang, Yanjing Wang, Dennis Russell Salahub, Qin Xu, Jianmin Wang, Xue Jiang, Yi Xiong, Dong-Qing Wei:
A transformer-based model to predict peptide-HLA class I binding and optimize mutated peptides for vaccine design. Nat. Mach. Intell. 4(3): 300-311 (2022) - 2021
- [j7]Zhiwen Shi, Yanyi Chu, Yonghong Zhang, Yanjing Wang, Dong-Qing Wei:
Prediction of Blood-Brain Barrier Permeability of Compounds by Fusing Resampling Strategies and eXtreme Gradient Boosting. IEEE Access 9: 9557-9566 (2021) - [j6]Yanyi Chu, Aman Chandra Kaushik, Xiangeng Wang, Wei Wang, Yufang Zhang, Xiaoqi Shan, Dennis Russell Salahub, Yi Xiong, Dong-Qing Wei:
DTI-CDF: a cascade deep forest model towards the prediction of drug-target interactions based on hybrid features. Briefings Bioinform. 22(1): 451-462 (2021) - [j5]Yanyi Chu, Xiaoqi Shan, Tianhang Chen, Mingming Jiang, Yanjing Wang, Qiankun Wang, Dennis Russell Salahub, Yi Xiong, Dong-Qing Wei:
DTI-MLCD: predicting drug-target interactions using multi-label learning with community detection method. Briefings Bioinform. 22(3) (2021) - [j4]Yanyi Chu, Xuhong Wang, Qiuying Dai, Yanjing Wang, Qiankun Wang, Shaoliang Peng, Xiaoyong Wei, Jingfei Qiu, Dennis Russell Salahub, Yi Xiong, Dong-Qing Wei:
MDA-GCNFTG: identifying miRNA-disease associations based on graph convolutional networks via graph sampling through the feature and topology graph. Briefings Bioinform. 22(6) (2021) - [j3]Mingming Jiang, Bowen Zhao, Shenggan Luo, Qiankun Wang, Yanyi Chu, Tianhang Chen, Xueying Mao, Yatong Liu, Yanjing Wang, Xue Jiang, Dong-Qing Wei, Yi Xiong:
NeuroPpred-Fuse: an interpretable stacking model for prediction of neuropeptides by fusing sequence information and feature selection methods. Briefings Bioinform. 22(6) (2021) - [j2]Qiuying Dai, Yanyi Chu, Zhiqi Li, Yusong Zhao, Xueying Mao, Yanjing Wang, Yi Xiong, Dong-Qing Wei:
MDA-CF: Predicting MiRNA-Disease associations based on a cascade forest model by fusing multi-source information. Comput. Biol. Medicine 136: 104706 (2021)
2010 – 2019
- 2019
- [j1]Xiaoqi Shan, Xiangeng Wang, Cheng-Dong Li, Yanyi Chu, Yufang Zhang, Yi Xiong, Dong-Qing Wei:
Prediction of CYP450 Enzyme-Substrate Selectivity Based on the Network-Based Label Space Division Method. J. Chem. Inf. Model. 59(11): 4577-4586 (2019)
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