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2020 – today
- 2023
[i11]Francesco Camaglia, Ilya Nemenman, Thierry Mora, Aleksandra M. Walczak:
Bayesian estimation of the Kullback-Leibler divergence for categorical sytems using mixtures of Dirichlet priors. CoRR abs/2307.04201 (2023)- 2022
- [j21]Kamesh Krishnamurthy, Ann M. Hermundstad, Thierry Mora, Aleksandra M. Walczak, Vijay Balasubramanian:
Disorder and the Neural Representation of Complex Odors. Frontiers Comput. Neurosci. 16 (2022) - [j20]Cosimo Lupo
, Natanael Spisak, Aleksandra M. Walczak, Thierry Mora:
Learning the statistics and landscape of somatic mutation-induced insertions and deletions in antibodies. PLoS Comput. Biol. 18(6) (2022) - [c3]Siwei Wang, Benjamin Hoshal, Elizabeth de Laittre, Thierry Mora, Michael Berry, Stephanie E. Palmer:
Learning low-dimensional generalizable natural features from retina using a U-net. NeurIPS 2022 - 2021
- [j19]Vedant Sachdeva, Thierry Mora, Aleksandra M. Walczak, Stephanie E. Palmer:
Optimal prediction with resource constraints using the information bottleneck. PLoS Comput. Biol. 17(3) (2021) - [j18]Barbara Bravi, Vinod P. Balachandran, Benjamin D. Greenbaum, Aleksandra M. Walczak, Thierry Mora, Rémi Monasson, Simona Cocco:
Probing T-cell response by sequence-based probabilistic modeling. PLoS Comput. Biol. 17(9) (2021) - [i10]Federica Ferretti, Victor Chardès, Thierry Mora, Aleksandra M. Walczak, Irene Giardina:
The Connection between Discrete- and Continuous-Time Descriptions of Gaussian Continuous Processes. CoRR abs/2101.06482 (2021) - [i9]Giulio Isacchini, Natanael Spisak, Armita Nourmohammad, Thierry Mora, Aleksandra M. Walczak:
MINIMALIST: Mutual INformatIon Maximization for Amortized Likelihood Inference from Sampled Trajectories. CoRR abs/2106.01808 (2021) - 2020
- [j17]Giulio Isacchini, Carlos Olivares, Armita Nourmohammad, Aleksandra M. Walczak, Thierry Mora:
SOS: online probability estimation and generation of T-and B-cell receptors. Bioinform. 36(16): 4510-4512 (2020) - [j16]Maximilian Puelma Touzel, Aleksandra M. Walczak, Thierry Mora:
Inferring the immune response from repertoire sequencing. PLoS Comput. Biol. 16(4) (2020) - [j15]Zachary Sethna, Giulio Isacchini, Thomas Dupic, Thierry Mora, Aleksandra M. Walczak, Yuval Elhanati:
Population variability in the generation and selection of T-cell repertoires. PLoS Comput. Biol. 16(12) (2020) - [c2]Gabriel Mahuas, Giulio Isacchini, Olivier Marre, Ulisse Ferrari, Thierry Mora:
A new inference approach for training shallow and deep generalized linear models of noisy interacting neurons. NeurIPS 2020 - [i8]Gabriel Mahuas, Giulio Isacchini, Olivier Marre, Ulisse Ferrari, Thierry Mora:
A new inference approach for training shallow and deep generalized linear models of noisy interacting neurons. CoRR abs/2006.06497 (2020)
2010 – 2019
- 2019
- [j14]Zachary Sethna, Yuval Elhanati, Jr Curtis G. Callan, Aleksandra M. Walczak, Thierry Mora:
OLGA: fast computation of generation probabilities of B- and T-cell receptor amino acid sequences and motifs. Bioinform. 35(17): 2974-2981 (2019) - [j13]Christophe Gardella, Olivier Marre, Thierry Mora:
Modeling the Correlated Activity of Neural Populations: A Review. Neural Comput. 31(2) (2019) - [j12]Thomas Dupic, Quentin Marcou, Aleksandra M. Walczak, Thierry Mora:
Genesis of the αβ T-cell receptor. PLoS Comput. Biol. 15(3) (2019) - [j11]Jacopo Marchi, Ezequiel A. Galpern, Rocío Espada, Diego U. Ferreiro, Aleksandra M. Walczak, Thierry Mora:
Size and structure of the sequence space of repeat proteins. PLoS Comput. Biol. 15(8) (2019) - 2018
- [j10]Ulisse Ferrari, Stéphane Deny, Olivier Marre, Thierry Mora:
A Simple Model for Low Variability in Neural Spike Trains. Neural Comput. 30(11) (2018) - [j9]Nicholas A. Rossi, Thierry Mora, Aleksandra M. Walczak, Mary J. Dunlop:
Active degradation of MarA controls coordination of its downstream targets. PLoS Comput. Biol. 14(12) (2018) - 2017
- [j8]Charles K. Fisher, Thierry Mora, Aleksandra M. Walczak:
Variable habitat conditions drive species covariation in the human microbiota. PLoS Comput. Biol. 13(4) (2017) - [j7]Rocío Espada, R. Gonzalo Parra, Thierry Mora, Aleksandra M. Walczak, Diego U. Ferreiro:
Inferring repeat-protein energetics from evolutionary information. PLoS Comput. Biol. 13(6) (2017) - [j6]Mikhail V. Pogorelyy, Yuval Elhanati, Quentin Marcou, Anastasiia L. Sycheva, Ekaterina Komech, Vadim I. Nazarov, Olga V. Britanova, Dmitry M. Chudakov, Ilgar Z. Mamedov, Yuri B. Lebedev, Thierry Mora, Aleksandra M. Walczak:
Persisting fetal clonotypes influence the structure and overlap of adult human T cell receptor repertoires. PLoS Comput. Biol. 13(7) (2017) - [c1]Christophe Gardella, Olivier Marre, Thierry Mora:
Restricted Boltzmann Machines provide an accurate metric for retinal responses to visual stimuli. ICLR (Workshop) 2017 - 2016
- [j5]Yuval Elhanati, Quentin Marcou, Thierry Mora, Aleksandra M. Walczak:
repgenHMM: a dynamic programming tool to infer the rules of immune receptor generation from sequence data. Bioinform. 32(13): 1943-1951 (2016) - 2015
- [j4]Rocío Espada, R. Gonzalo Parra, Thierry Mora, Aleksandra M. Walczak, Diego U. Ferreiro:
Capturing coevolutionary signals inrepeat proteins. BMC Bioinform. 16: 207:1-207:10 (2015) - [j3]Olivier Marre, Vicente Botella-Soler, Kristina D. Simmons, Thierry Mora, Gasper Tkacik, Michael J. Berry II:
High Accuracy Decoding of Dynamical Motion from a Large Retinal Population. PLoS Comput. Biol. 11(7) (2015) - 2014
- [i7]Andrea Cavagna, Lorenzo Del Castello, Irene Giardina, Tomas Grigera, Asja Jelic, Stefania Melillo, Thierry Mora, Leonardo Parisi, Edmondo Silvestri, Massimiliano Viale, Aleksandra M. Walczak:
Flocking and turning: a new model for self-organized collective motion. CoRR abs/1403.1202 (2014)
2000 – 2009
- 2009
- [j2]Thierry Mora, Howard Yu, Yoshiyuki Sowa, Ned S. Wingreen:
Steps in the Bacterial Flagellar Motor. PLoS Comput. Biol. 5(10) (2009) - 2008
- [j1]Hervé Daudé, Marc Mézard, Thierry Mora, Riccardo Zecchina:
Pairs of SAT-assignments in random Boolean formulæ. Theor. Comput. Sci. 393(1-3): 260-279 (2008) - 2007
- [i6]Thierry Mora, Lenka Zdeborová:
Random subcubes as a toy model for constraint satisfaction problems. CoRR abs/0710.3804 (2007) - 2006
- [i5]Thierry Mora, Olivier Rivoire:
Statistical mechanics of error exponents for error-correcting codes. CoRR abs/cond-mat/0606696 (2006) - [i4]Thierry Mora, Marc Mézard:
Geometrical organization of solutions to random linear Boolean equations. CoRR abs/cond-mat/0609099 (2006) - [i3]Thierry Mora, Olivier Rivoire:
Error Exponents of Low-Density Parity-Check Codes on the Binary Erasure Channel. CoRR abs/cs/0605130 (2006) - 2005
- [i2]Marc Mézard, Thierry Mora, Riccardo Zecchina:
Clustering of solutions in the random satisfiability problem. CoRR abs/cond-mat/0504070 (2005) - [i1]Hervé Daudé, Marc Mézard, Thierry Mora, Riccardo Zecchina:
Pairs of SAT Assignment in Random Boolean Formulae. CoRR abs/cond-mat/0506053 (2005)
Coauthor Index
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