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2020 – today
- 2022
[j21]Kaiyin Zhou, Sheng Zhang, Yuxing Wang, Kevin Bretonnel Cohen, Jin-Dong Kim, Qi Luo, Xinzhi Yao
, Xingyu Zhou, Jingbo Xia:
High-quality gene/disease embedding in a multi-relational heterogeneous graph after a joint matrix/tensor decomposition. J. Biomed. Informatics 126: 103973 (2022)- [c59]Mana Ashida, Jin-Dong Kim, Seunghun Lee:
COVID-19 Mythbusters in World Languages. LREC 2022: 3048-3055 - [i5]Tiffany J. Callahan, Adrianne L. Stefanski, Jin-Dong Kim, William A. Baumgartner Jr., Jordan M. Wyrwa, Lawrence E. Hunter:
Knowledge-Driven Mechanistic Enrichment of the Preeclampsia Ignorome. CoRR abs/2207.14294 (2022) - 2021
- [j20]Kaiyin Zhou, Yuxing Wang, Kevin Bretonnel Cohen, Jin-Dong Kim, Xiaohang Ma, Zhixue Shen, Xiangyu Meng, Jingbo Xia:
Bridging heterogeneous mutation data to enhance disease gene discovery. Briefings Bioinform. 22(5) (2021) - 2020
- [c58]Jin-Dong Kim, Nancy Ide, Keith Suderman:
Towards Standardization of Web Service Protocols for NLPaaS. IWLTP@LREC 2020: 59-65 - [c57]Youngbin Noh, Kuntae Kim, Minho Lee, Cheolhun Heo, Yongbin Jeong, Yoosung Jeong, Younggyun Hahm, Taehwan Oh, Hyonsu Choe, Seokwon Park, Jin-Dong Kim, Key-Sun Choi:
Enhancing Quality of Corpus Annotation: Construction of the Multi-Layer Corpus Annotation and Simplified Validation of the Corpus Annotation. PACLIC 2020: 216-224 - [i4]Rutger A. Vos, Toshiaki Katayama, Hiroyuki Mishima, Shin Kawano, Shuichi Kawashima, Jin-Dong Kim, Yuki Moriya, Toshiaki Tokimatsu, Atsuko Yamaguchi, Yasunori Yamamoto, Hongyan Wu, Peter Amstutz, Erick Antezana, Nobuyuki P. Aoki, Kazuharu Arakawa, Jerven T. Bolleman, Evan E. Bolton, Raoul Jean Pierre Bonnal, Hidemasa Bono, Kees Burger, Hirokazu Chiba, Kevin Bretonnel Cohen, Eric W. Deutsch, Jesualdo Tomás Fernández-Breis, Gang Fu, Takatomo Fujisawa, Atsushi Fukushima, Alexander García Castro, Naohisa Goto, Tudor Groza, Colin Hercus, Robert Hoehndorf, Kotone Itaya, Nick S. Juty, Takeshi Kawashima, Jee-Hyub Kim, Akira R. Kinjo, Masaaki Kotera, Kouji Kozaki, Sadahiro Kumagai, Tatsuya Kushida, Thomas Lütteke, Masaaki Matsubara, Joe Miyamoto, Attayeb Mohsen, Hiroshi Mori, Yuki Naito, Takeru Nakazato, Jeremy NguyenXuan, Kozo Nishida, Naoki Nishida, Hiroyo Nishide, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Benedict Paten, Jean-Luc Perret, Philip Prathipati, Pjotr Prins, Núria Queralt-Rosinach, Daisuke Shinmachi, Shinya Suzuki, Tsuyosi Tabata, Terue Takatsuki, Kieron R. Taylor, Mark Thompson, Ikuo Uchiyama, Bruno Vieira, Chih-Hsuan Wei, Mark D. Wilkinson, Issaku Yamada, Ryota Yamanaka, Kazutoshi Yoshitake, Akiyasu C. Yoshizawa, Michel Dumontier, Kenjiro Kosaki, Toshihisa Takagi:
BioHackathon 2015: Semantics of data for life sciences and reproducible research. F1000Research 9: 136 (2020)
2010 – 2019
- 2019
- [j19]Jin-Dong Kim, Yue Wang, Toyofumi Fujiwara, Shujiro Okuda, Tiffany J. Callahan, K. Bretonnel Cohen:
Open Agile text mining for bioinformatics: the PubAnnotation ecosystem. Bioinform. 35(21): 4372-4380 (2019) - [c56]Richard Eckart de Castilho, Nancy Ide, Jin-Dong Kim, Jan-Christoph Klie, Keith Suderman:
A Multi-Platform Annotation Ecosystem for Domain Adaptation. LAW@ACL 2019: 189-194 - [c55]Yuxing Wang, Jingbo Xia, Kaiyin Zhou, Jin-Dong Kim, Kevin Cohen, Mina Gachloo, Yuxin Ren, Shanghui Nie, Xuan Qin, Panzhong Lu:
An Active Gene Annotation Corpus and Its Application on Anti-epilepsy Drug Discovery. BIBM 2019: 512-519 - [e6]Jin-Dong Kim, Claire Nédellec, Robert Bossy, Louise Deléger:
Proceedings of The 5th Workshop on BioNLP Open Shared Tasks, BioNLP-OST@EMNLP-IJNCLP 2019, Hong Kong, China, November 4, 2019. Association for Computational Linguistics 2019, ISBN 978-1-950737-82-6 [contents] - [i3]Toshiaki Katayama, Shuichi Kawashima, Gos Micklem, Shin Kawano, Jin-Dong Kim, Simon Kocbek, Shinobu Okamoto, Yue Wang, Hongyan Wu, Atsuko Yamaguchi, Yasunori Yamamoto, Erick Antezana, Kiyoko F. Aoki-Kinoshita, Kazuharu Arakawa, Masaki Banno, Joachim Baran, Jerven T. Bolleman, Raoul Jean Pierre Bonnal, Hidemasa Bono, Jesualdo Tomás Fernández-Breis, Robert M. Buels, Matthew P. Campbell, Hirokazu Chiba, Peter J. A. Cock, Kevin Bretonnel Cohen, Michel Dumontier, Takatomo Fujisawa, Toyofumi Fujiwara, Leyla J. García, Pascale Gaudet, Emi Hattori, Robert Hoehndorf, Kotone Itaya, Maori Ito, Daniel Jamieson, Simon Jupp, Nick S. Juty, Alex Kalderimis, Fumihiro Kato, Hideya Kawaji, Takeshi Kawashima, Akira R. Kinjo, Yusuke Komiyama, Masaaki Kotera, Tatsuya Kushida, James Malone, Masaaki Matsubara, Satoshi Mizuno, Sayaka Mizutani, Hiroshi Mori, Yuki Moriya, Katsuhiko Murakami, Takeru Nakazato, Hiroyo Nishide, Yosuke Nishimura, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Hiromasa Ono, Yasset Pérez-Riverol, Daisuke Shinmachi, Andrea Splendiani, Francesco Strozzi, Shinya Suzuki, Junichi Takehara, Mark Thompson, Toshiaki Tokimatsu, Ikuo Uchiyama, Karin Verspoor, Mark D. Wilkinson, Sarala M. Wimalaratne, Issaku Yamada, Nozomi Yamamoto, Masayuki Yarimizu, Shoko Kawamoto, Toshihisa Takagi:
BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services. F1000Research 8: 1677 (2019) - 2018
- [c54]Yuxing Wang, Xinzhi Yao, Kaiyin Zhou, Xuan Qin, Jin-Dong Kim, Kevin Bretonnel Cohen, Jingbo Xia:
Guideline Design of an Active Gene Annotation Corpus for the Purpose of Drug Repurposing. CISP-BMEI 2018: 1-5 - [c53]Kaiyin Zhou, Xinzhi Yao, Shuguang Wang, Jin-Dong Kim, Kevin Bretonnel Cohen, Ruiying Chen, Yuxing Wang, Jingbo Xia:
Trigger Words Detection by Integrating Attention Mechanism into Bi-LSTM Neural Network - A Case Study in PubMED-Wide Trigger Words Detection for Pancreatic Cancer. CCL 2018: 398-409 - [c52]Takuto Asakura, Jin-Dong Kim, Yasunori Yamamoto, Yuka Tateisi, Toshihisa Takagi:
A Quantitative Evaluation of Natural Language Question Interpretation for Question Answering Systems. JIST 2018: 215-231 - [c51]Nancy Ide, Keith Suderman, Jin-Dong Kim:
Mining Biomedical Publications With The LAPPS Grid. LREC 2018 - [c50]Kijong Han, Sangha Nam, YoungGyun Hahm, Jiseong Kim, Jiho Kim, Jin-Dong Kim, Key-Sun Choi:
Analysis of Distant Supervision for Relation Extraction Dataset. ISWC (P&D/Industry/BlueSky) 2018 - [e5]Key-Sun Choi, Luis Espinosa Anke, Thierry Declerck, Dagmar Gromann, Jin-Dong Kim, Axel-Cyrille Ngonga Ngomo, Muhammad Saleem, Ricardo Usbeck:
Joint proceedings of the 4th Workshop on Semantic Deep Learning (SemDeep-4) and NLIWoD4: Natural Language Interfaces for the Web of Data (NLIWOD-4) and 9th Question Answering over Linked Data challenge (QALD-9) co-located with 17th International Semantic Web Conference (ISWC 2018), Monterey, California, United States of America, October 8th - 9th, 2018. CEUR Workshop Proceedings 2241, CEUR-WS.org 2018 [contents] - [i2]Takuto Asakura, Jin-Dong Kim, Yasunori Yamamoto, Yuka Tateisi, Toshihisa Takagi:
A Quantitative Evaluation of Natural Language Question Interpretation for Question Answering Systems. CoRR abs/1809.07485 (2018) - 2017
- [j18]Jin-Dong Kim:
Biomedical Natural Language Processing. Comput. Linguistics 43(1): 265-267 (2017) - [c49]Jin-Dong Kim, Christina Unger, Axel-Cyrille Ngonga Ngomo, André Freitas, YoungGyun Hahm, Jiseong Kim, Gyu-Hyun Choi, Jeonguk Kim, Ricardo Usbeck, Myoung-Gu Kang, Key-Sun Choi:
OKBQA: an Open Collaboration Framework for Development of Natural Language Question-Answering over Knowledge Bases. ISWC (Posters, Demos & Industry Tracks) 2017 - [c48]Key-Sun Choi, Teruko Mitamura, Piek Vossen, Jin-Dong Kim, Axel-Cyrille Ngonga Ngomo:
SIGIR 2017 Workshop on Open Knowledge Base and Question Answering (OKBQA2017). SIGIR 2017: 1433-1434 - [e4]Ricardo Usbeck, Axel-Cyrille Ngonga Ngomo, Jin-Dong Kim, Key-Sun Choi, Philipp Cimiano, Irini Fundulaki, Anastasia Krithara:
Joint Proceedings of BLINK2017: 2nd International Workshop on Benchmarking Linked Data and NLIWoD3: Natural Language Interfaces for the Web of Data co-located with 16th International Semantic Web Conference (ISWC 2017), Vienna, Austria, October 21st - to - 22nd, 2017. CEUR Workshop Proceedings 1932, CEUR-WS.org 2017 [contents] - 2016
- [c47]Jin-Dong Kim, Yue Wang, Nicola Colic, Seung-Han Baek, Yong Hwan Kim, Min Song:
Refactoring the Genia Event Extraction Shared Task Toward a General Framework for IE-Driven KB Development. BioNLP (Shared Task) 2016: 23-31 - [e3]Claire Nedellec, Robert Bossy, Jin-Dong Kim:
Proceedings of the 4th BioNLP Shared Task Workshop, BioNLP 2016, Berlin, Germany, August 13, 2016. Association for Computational Linguistics 2016, ISBN 978-1-945626-21-0 [contents] - 2015
- [j17]Jin-Dong Kim, Jung-jae Kim, Xu Han, Dietrich Rebholz-Schuhmann:
Extending the evaluation of Genia Event task toward knowledge base construction and comparison to Gene Regulation Ontology task. BMC Bioinform. 16(S10): S3 (2015) - [c46]Hongyan Wu, Atsuko Yamaguchi, Jin-Dong Kim:
Dynamic Join Order Optimization for SPARQL Endpoint Federation. SSWS@ISWC 2015: 48-62 - 2014
- [j16]Toshiaki Katayama, Mark D. Wilkinson, Kiyoko F. Aoki-Kinoshita, Shuichi Kawashima, Yasunori Yamamoto, Atsuko Yamaguchi, Shinobu Okamoto, Shin Kawano, Jin-Dong Kim, Yue Wang, Hongyan Wu, Yoshinobu Kano, Hiromasa Ono, Hidemasa Bono, Simon Kocbek, Jan Aerts, Yukie Akune, Erick Antezana, Kazuharu Arakawa, Bruno Aranda, Joachim Baran, Jerven T. Bolleman, Raoul Jean Pierre Bonnal, Pier Luigi Buttigieg, Matthew P. Campbell, Yi-an Chen, Hirokazu Chiba, Peter J. A. Cock, Kevin Bretonnel Cohen, Alexandru Constantin:
BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains. J. Biomed. Semant. 5: 5 (2014) - 2013
- [j15]Jörg Hakenberg, Goran Nenadic, Dietrich Rebholz-Schuhmann, Jin-Dong Kim:
Literature Mining Solutions for Life Science Research. Adv. Bioinformatics 2013: 320436:1-320436:2 (2013) - [j14]Kiyoko F. Aoki-Kinoshita, Jerven T. Bolleman, Matthew P. Campbell, Shin Kawano, Jin-Dong Kim, Thomas Lütteke, Masaaki Matsubara, Shujiro Okuda, René Ranzinger, Hiromichi Sawaki, Toshihide Shikanai, Daisuke Shinmachi, Yoshinori Suzuki, Philip V. Toukach, Issaku Yamada, Nicolle H. Packer, Hisashi Narimatsu:
Introducing glycomics data into the Semantic Web. J. Biomed. Semant. 4: 39 (2013) - [c45]K. Bretonnel Cohen, Jin-Dong Kim:
Evaluation of SPARQL query generation from natural language questions. SWAIE@RANLP 2013: 3-7 - [c44]Claire Nédellec, Robert Bossy, Jin-Dong Kim, Jung-Jae Kim, Tomoko Ohta, Sampo Pyysalo, Pierre Zweigenbaum:
Overview of BioNLP Shared Task 2013. BioNLP@ACL (Shared Task) 2013: 1-7 - [c43]Jin-Dong Kim, Yue Wang, Yasunori Yamamoto:
The Genia Event Extraction Shared Task, 2013 Edition - Overview. BioNLP@ACL (Shared Task) 2013: 8-15 - [c42]Simon Kocbek, Jin-Dong Kim, Jean-Luc Perret, Patricia L. Whetzel:
Visualizing ontology mappings to help ontology engineers identify relevant ontologies for their reuse. ICBO 2013: 34-39 - [c41]Jin-Dong Kim:
A Generalized LCS Algorithm and Its Application to Corpus Alignment. IJCNLP 2013: 1112-1116 - [e2]Claire Nédellec, Robert Bossy, Jin-Dong Kim, Jung-Jae Kim, Tomoko Ohta, Sampo Pyysalo, Pierre Zweigenbaum:
Proceedings of the BioNLP Shared Task 2013 Workshop, Sofia, Bulgaria, August 9, 2013. Association for Computational Linguistics 2013, ISBN 978-1-937284-55-8 [contents] - 2012
- [j13]Ngan L. T. Nguyen, Jin-Dong Kim, Makoto Miwa, Takuya Matsuzaki, Junichi Tsujii:
Improving protein coreference resolution by simple semantic classification. BMC Bioinform. 13: 304 (2012) - [j12]Jin-Dong Kim, Ngan L. T. Nguyen, Yue Wang, Jun'ichi Tsujii, Toshihisa Takagi, Akinori Yonezawa:
The Genia Event and Protein Coreference tasks of the BioNLP Shared Task 2011. BMC Bioinform. 13(S-11): S1 (2012) - [c40]Jin-Dong Kim, Yue Wang:
CSAF - a community-sourcing annotation framework. LAW@ACL 2012: 153-156 - [c39]Sampo Pyysalo, Pontus Stenetorp, Tomoko Ohta, Jin-Dong Kim, Sophia Ananiadou:
New Resources and Perspectives for Biomedical Event Extraction. BioNLP@HLT-NAACL 2012: 100-108 - [c38]Jin-Dong Kim, Yue Wang:
PubAnnotation - a persistent and sharable corpus and annotation repository. BioNLP@HLT-NAACL 2012: 202-205 - [c37]Yue Wang, Jin-Dong Kim:
Boosting the protein name recognition performance by bootstrapping on selected text. BioNLP@HLT-NAACL 2012: 240-243 - [c36]Simon Kocbek, Jean-Luc Perret, Jin-Dong Kim:
Visual Presentation of Mappings Between Biomedical Ontologies. SWAT4LS 2012 - 2011
- [j11]Simon Kocbek, Rune Sætre, Gregor Stiglic, Jin-Dong Kim, Igor Pernek, Yoshimasa Tsuruoka, Peter Kokol, Sophia Ananiadou, Jun'ichi Tsujii:
AGRA: analysis of gene ranking algorithms. Bioinform. 27(8): 1185-1186 (2011) - [j10]Yoshinobu Kano, Jari Björne, Filip Ginter, Tapio Salakoski, Ekaterina Buyko, Udo Hahn, K. Bretonnel Cohen, Karin Verspoor, Christophe Roeder, Lawrence E. Hunter, Halil Kilicoglu, Sabine Bergler, Sofie Van Landeghem, Thomas Van Parys, Yves Van de Peer, Makoto Miwa, Sophia Ananiadou, Mariana L. Neves, Alberto D. Pascual-Montano, Arzucan Özgür, Dragomir R. Radev, Sebastian Riedel, Rune Sætre, Hong-Woo Chun, Jin-Dong Kim, Sampo Pyysalo, Tomoko Ohta, Jun'ichi Tsujii:
U-Compare bio-event meta-service: compatible BioNLP event extraction services. BMC Bioinform. 12: 481 (2011) - [j9]Jin-Dong Kim, Tomoko Ohta, Sampo Pyysalo, Yoshinobu Kano, Jun'ichi Tsujii:
Extracting Bio-molecular Events from literature - the BioNLP'09 Shared Task. Comput. Intell. 27(4): 513-540 (2011) - [c35]Atsuko Yamaguchi, Yasunori Yamamoto, Jin-Dong Kim, Toshihisa Takagi, Akinori Yonezawa:
Discriminative Application of String Similarity Methods to Chemical and Non-chemical Names for Biomedical Abbreviation Clustering. BIBM 2011: 544-549 - [c34]Jin-Dong Kim, Sampo Pyysalo, Tomoko Ohta, Robert Bossy, Ngan L. T. Nguyen, Jun'ichi Tsujii:
Overview of BioNLP Shared Task 2011. BioNLP@ACL (Shared Task) 2011: 1-6 - [c33]Jin-Dong Kim, Yue Wang, Toshihisa Takagi, Akinori Yonezawa:
Overview of Genia Event Task in BioNLP Shared Task 2011. BioNLP@ACL (Shared Task) 2011: 7-15 - [c32]Ngan L. T. Nguyen, Jin-Dong Kim, Jun'ichi Tsujii:
Overview of BioNLP 2011 Protein Coreference Shared Task. BioNLP@ACL (Shared Task) 2011: 74-82 - [c31]Pontus Stenetorp, Goran Topic, Sampo Pyysalo, Tomoko Ohta, Jin-Dong Kim, Jun'ichi Tsujii:
BioNLP Shared Task 2011: Supporting Resources. BioNLP@ACL (Shared Task) 2011: 112-120 - [c30]Tadayoshi Hara, Yuka Tateisi, Jin-Dong Kim, Yusuke Miyao:
Parsing Natural Language Queries for Life Science Knowledge. BioNLP@ACL 2011: 164-173 - [c29]Simon Kocbek, Rune Sætre, Gregor Stiglic, Jin-Dong Kim, Igor Pernek, Yoshimasa Tsuruoka, Peter Kokol, Sophia Ananiadou, Jun'ichi Tsujii:
Poster: Analysis of gene ranking algorithms with extraction of relevant biomedical concepts from PubMed publications. ICCABS 2011: 249 - [c28]Atsuko Yamaguchi, Yasunori Yamamoto, Jin-Dong Kim, Toshihisa Takagi, Akinori Yonezawa:
Discriminative Optimization of String Similarity and Its Application to Biomedical Abbreviation Clustering. ICMLA (2) 2011: 72-77 - [e1]Jun'ichi Tsujii, Jin-Dong Kim, Sampo Pyysalo:
Proceedings of BioNLP Shared Task 2011 Workshop, Portland, Oregon, USA, June 24, 2011. Association for Computational Linguistics 2011, ISBN 9781937284091 [contents] - 2010
- [j8]Makoto Miwa, Rune Sætre, Jin-Dong Kim, Jun'ichi Tsujii:
Event Extraction with Complex Event Classification Using Rich Features. J. Bioinform. Comput. Biol. 8(1): 131-146 (2010) - [j7]Yue Wang, Jin-Dong Kim, Rune Sætre, Sampo Pyysalo, Tomoko Ohta, Jun'ichi Tsujii:
Improving the Inter-Corpora Compatibility for protein Annotations. J. Bioinform. Comput. Biol. 8(5): 901-916 (2010) - [j6]Tomoko Ohta, Sampo Pyysalo, Jin-Dong Kim, Jun'ichi Tsujii:
A Re-Evaluation of Biomedical Named Entity-Term Relations. J. Bioinform. Comput. Biol. 8(5): 917-928 (2010) - [c27]Jin-Dong Kim, Yasunori Yamamoto, Atsuko Yamaguchi, Mitsuteru Nakao, Kenta Oouchida, Hong-Woo Chun, Toshihisa Takagi:
Natural Language Query Processing for Life Science Knowledge - Position Paper. AMT 2010: 158-165 - [c26]Hong-Woo Chun, Jin-Dong Kim, Yunsoo Choi, Won-Kyung Sung:
Extracting Protein Sub-cellular Localizations from Literature. AMT 2010: 373-382 - [c25]Tomoko Ohta, Sampo Pyysalo, Makoto Miwa, Jin-Dong Kim, Jun'ichi Tsujii:
Event Extraction for Post-Translational Modifications. BioNLP@ACL 2010: 19-27
2000 – 2009
- 2009
- [j5]Yue Wang, Jin-Dong Kim, Rune Sætre, Sampo Pyysalo, Jun'ichi Tsujii:
Investigating heterogeneous protein annotations toward cross-corpora utilization. BMC Bioinform. 10: 403 (2009) - [c24]Jin-Dong Kim, Tomoko Ohta, Sampo Pyysalo, Yoshinobu Kano, Jun'ichi Tsujii:
Overview of BioNLP'09 Shared Task on Event Extraction. BioNLP@HLT-NAACL (Shared Task) 2009: 1-9 - [c23]Sampo Pyysalo, Tomoko Ohta, Jin-Dong Kim, Jun'ichi Tsujii:
Static Relations: a Piece in the Biomedical Information Extraction Puzzle. BioNLP@HLT-NAACL 2009: 1-9 - [c22]Tomoko Ohta, Jin-Dong Kim, Sampo Pyysalo, Yue Wang, Jun'ichi Tsujii:
Incorporating GENETAG-style annotation to GENIA corpus. BioNLP@HLT-NAACL 2009: 106-107 - [c21]Sumire Uematsu, Jin-Dong Kim, Jun'ichi Tsujii:
Bridging the Gap between Domain-Oriented and Linguistically-Oriented Semantics. BioNLP@HLT-NAACL 2009: 162-170 - [c20]Takeshi S. Kobayakawa, Tadashi Kumano, Hideki Tanaka, Naoaki Okazaki, Jin-Dong Kim, Jun'ichi Tsujii:
Opinion classification with tree kernel SVM using linguistic modality analysis. CIKM 2009: 1791-1794 - [c19]Kenta Oouchida, Jin-Dong Kim, Toshihisa Takagi, Jun'ichi Tsujii:
GuideLink: A Corpus Annotation System that Integrates the Management of Annotation Guidelines. PACLIC 2009: 771-778 - 2008
- [j4]Jin-Dong Kim, Tomoko Ohta, Jun'ichi Tsujii:
Corpus annotation for mining biomedical events from literature. BMC Bioinform. 9 (2008) - [j3]Kanae Oda, Jin-Dong Kim, Tomoko Ohta, Daisuke Okanohara, Takuya Matsuzaki, Yuka Tateisi, Jun'ichi Tsujii:
New challenges for text mining: mapping between text and manually curated pathways. BMC Bioinform. 9(S-3) (2008) - [c18]Jin-Dong Kim, Tomoko Ohta, Kanae Oda, Jun'ichi Tsujii:
From Text to Pathway: Corpus Annotation for Knowledge Acquisition from Biomedical Literature. APBC 2008: 165-176 - [c17]Hong-Woo Chun, Chisato Yamasaki, Naomi Saichi, Masayuki Tanaka, Teruyoshi Hishiki, Tadashi Imanishi, Takashi Gojobori, Jin-Dong Kim, Jun'ichi Tsujii, Toshihisa Takagi:
Prediction of Protein Sub-cellular Localization using Information from Texts and Sequences. BioNLP 2008: 90-91 - [c16]Yue Wang, Kazuhiro Yoshida, Jin-Dong Kim, Rune Saetre, Jun'ichi Tsujii:
Raising the Compatibility of Heterogeneous Annotations: A Case Study on. BioNLP 2008: 118-119 - [c15]Ngan L. T. Nguyen, Jin-Dong Kim:
Exploring Domain Differences for the Design of a Pronoun Resolution System for Biomedical Text. COLING 2008: 625-632 - [c14]Ngan L. T. Nguyen, Jin-Dong Kim, Jun'ichi Tsujii:
Challenges in Pronoun Resolution System for Biomedical Text. LREC 2008 - 2006
- [j2]Hong-Woo Chun, Yoshimasa Tsuruoka, Jin-Dong Kim, Rie Shiba, Naoki Nagata, Teruyoshi Hishiki, Jun'ichi Tsujii:
Automatic recognition of topic-classified relations between prostate cancer and genes using MEDLINE abstracts. BMC Bioinform. 7(S-3) (2006) - [c13]Tomoko Ohta, Yusuke Miyao, Takashi Ninomiya, Yoshimasa Tsuruoka, Akane Yakushiji, Katsuya Masuda, Jumpei Takeuchi, Kazuhiro Yoshida, Tadayoshi Hara, Jin-Dong Kim, Yuka Tateisi, Jun'ichi Tsujii:
An Intelligent Search Engine and GUI-based Efficient MEDLINE Search Tool Based on Deep Syntactic Parsing. ACL 2006 - [c12]Tomoko Ohta, Yuka Tateisi, Jin-Dong Kim, Akane Yakushiji, Jun'ichi Tsujii:
Linguistic and Biological Annotations of Biological Interaction Events. LREC 2006: 1402-1405 - [c11]Hong-Woo Chun, Yoshimasa Tsuruoka, Jin-Dong Kim, Rie Shiba, Naoki Nagata, Teruyoshi Hishiki, Jun'ichi Tsujii:
Extraction of Gene-Disease Relations from Medline Using Domain Dictionaries and Machine Learning. Pacific Symposium on Biocomputing 2006: 4-15 - [c10]Hong-Woo Chun, Yoshimasa Tsuruoka, Jin-Dong Kim, Rie Shiba, Naoki Nagata, Teruyoshi Hishiki, Jun'ichi Tsujii:
Automatic Recognition of Topic-Classified Relations between Prostate Cancer and Genes from Medline Abstracts. SMBM 2006 - 2005
- [j1]Sang-Bum Kim, Hae-Chang Rim, Jin-Dong Kim:
Topic Document Model Approach for Naive Bayes Text Classification. IEICE Trans. Inf. Syst. 88-D(5): 1091-1094 (2005) - [c9]Yoshimasa Tsuruoka, Yuka Tateishi, Jin-Dong Kim, Tomoko Ohta, John McNaught, Sophia Ananiadou, Jun'ichi Tsujii:
Developing a Robust Part-of-Speech Tagger for Biomedical Text. Panhellenic Conference on Informatics 2005: 382-392 - 2004
- [c8]Nigel Collier, Jin-Dong Kim:
Introduction to the Bio-entity Recognition Task at JNLPBA. NLPBA/BioNLP 2004 - [c7]Jin-Dong Kim, Jun'ichi Tsujii:
Word Folding: Taking the Snapshot of Words Instead of the Whole. IJCNLP 2004: 406-415 - 2003
- [c6]Jin-Dong Kim, Hae-Chang Rim, Jun'ichi Tsujii:
Self-Organizing Markov Models and Their Application to Part-of-Speech Tagging. ACL 2003: 296-302 - [c5]Tomaz Erjavec, Jin-Dong Kim, Tomoko Ohta, Yuka Tateisi, Jun'ichi Tsujii:
Stretching TEI: Converting the Genia Corpus. LINC@EACL 2003 - [c4]Tomaz Erjavec, Jin-Dong Kim, Tomoko Ohta, Yuka Tateisi, Jun'ichi Tsujii:
Encoding Biomedical Resources in TEI: The Case of the GENIA Corpus. BioNLP@ACL 2003: 97-104 - [c3]Jin-Dong Kim, Tomoko Ohta, Yuka Tateisi, Jun'ichi Tsujii:
GENIA corpus - a semantically annotated corpus for bio-textmining. ISMB (Supplement of Bioinformatics) 2003: 180-182 - 2000
- [c2]Won-Ho Ryu, Jin-Dong Kim, Hae-Chang Rim, Heui-Seok Lim:
KCAT: A Korean Corpus Annotating Tool Minimizing Human Intervention. COLING 2000: 1096-1100
1990 – 1999
- 1999
- [c1]Jin-Dong Kim, Sang-Zoo Lee, Hae-Chang Rim:
HMM Specialization with Selective Lexicalization. EMNLP 1999 - [i1]Jin-Dong Kim, Sang-Zoo Lee, Hae-Chang Rim:
HMM Specialization with Selective Lexicalization. CoRR cs.CL/9912016 (1999)