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ORCIDHua Xu 0001
Person information
- affiliation: University of Texas Health Science Center at Houston, School of Biomedical Informatics, TX, USA
- affiliation (former): Vanderbilt University, School of Medicine, Department of Biomedical Informatics, Nashville, TN, USA
Other persons with the same name
- Hua Xu — disambiguation page
- Hua Xu 0002
![[0000-0001-5478-6879]](https://dblp.dagstuhl.de/img/orcid-mark.12x12.png "0000-0001-5478-6879")
— The University of Tsukuba, Graduate School of Business Sciences, Japan (and 1 more) - Hua Xu 0003 — Tsinghua University, Department of Computer Science and Technology, Beijing, China
- Hua Xu 0004 (aka: Hua Xue 0001) — Nanjing University of Aeronautics and Astronautics, Center for More Electric Aircraft Power System (CMEAPS), China
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2020 – today
- 2023
[j121]Zhaoyi Chen, Hansi Zhang, Xi Yang, Songzi Wu, Xing He, Jie Xu, Jingchuan Guo, Mattia C. F. Prosperi, Fei Wang, Hua Xu, Yong Chen, Hui Hu, Steven DeKosky, Matthew Farrer, Yi Guo, Yonghui Wu, Jiang Bian:
Assess the documentation of cognitive tests and biomarkers in electronic health records via natural language processing for Alzheimer's disease and related dementias. Int. J. Medical Informatics 170: 104973 (2023)- [j120]Lucila Ohno-Machado, Xiaoqian Jiang, Tsung-Ting Kuo, Shiqiang Tao, Luyao Chen, Pritham Ram, Guo-Qiang Zhang, Hua Xu:
A hierarchical strategy to minimize privacy risk when linking "De-identified" data in biomedical research consortia. J. Biomed. Informatics 139: 104322 (2023) - [i10]Yan Hu, Iqra Ameer, Xu Zuo, Xueqing Peng, Yujia Zhou, Zehan Li, Yiming Li, Jianfu Li, Xiaoqian Jiang, Hua Xu:
Zero-shot Clinical Entity Recognition using ChatGPT. CoRR abs/2303.16416 (2023) - 2022
- [j119]Yilu Fang, Betina Ross S. Idnay, Yingcheng Sun, Hao Liu, Zhehuan Chen, Karen Marder, Hua Xu, Rebecca Schnall, Chunhua Weng:
Combining human and machine intelligence for clinical trial eligibility querying. J. Am. Medical Informatics Assoc. 29(7): 1161-1171 (2022) - [j118]Hua Xu, David L. Buckeridge, Fei Wang, Peter Tarczy-Hornoch:
Novel informatics approaches to COVID-19 Research: From methods to applications. J. Biomed. Informatics 129: 104028 (2022) - [j117]Dalton Schutte, Jake Vasilakes, Anusha Bompelli, Yuqi Zhou, Marcelo Fiszman, Hua Xu, Halil Kilicoglu, Jeffrey R. Bishop, Terrence Adam, Rui Zhang:
Discovering novel drug-supplement interactions using SuppKG generated from the biomedical literature. J. Biomed. Informatics 131: 104120 (2022) - [j116]Hua Xu, Ziqi Yuan, Kang Zhao, Yunfeng Xu, Jiyun Zou, Kai Gao:
GAR-Net: A Graph Attention Reasoning Network for conversation understanding. Knowl. Based Syst. 240: 108055 (2022) - [j115]Jianfu Li, Qiang Wei, Omid Ghiasvand, Miao Chen, Victor S. Lobanov, Chunhua Weng, Hua Xu:
A comparative study of pre-trained language models for named entity recognition in clinical trial eligibility criteria from multiple corpora. BMC Medical Informatics Decis. Mak. 22(3): 235 (2022) - [j114]Andrea H. Ramirez, Lina M. Sulieman, David J. Schlueter, Alese E. Halvorson, Jun Qian, Francis Ratsimbazafy, Roxana Loperena-Cortes, Kelsey R. Mayo, Melissa A. Basford, Nicole Deflaux, Karthik Muthuraman, Karthik Natarajan, Abel N. Kho, Hua Xu, Consuelo H. Wilkins, Hoda Anton-Culver, Eric Boerwinkle, Mine Cicek, Cheryl R. Clark, Elizabeth Cohn, Lucila Ohno-Machado, Sheri D. Schully, Brian K. Ahmedani, Maria Argos, Robert M. Cronin, Christopher J. O'Donnell, Mona Fouad, David B. Goldstein, Philip Greenland, Scott J. Hebbring, Elizabeth W. Karlson, Parinda Khatri, Bruce Korf, Jordan W. Smoller, Stephen Sodeke, John Wilbanks, Justin Hentges, Stephen Mockrin, Christopher Lunt, Stephanie A. Devaney, Kelly Gebo, Joshua C. Denny, Robert J. Carroll, David Glazer, Paul A. Harris, George Hripcsak, Anthony A. Philippakis, Dan M. Roden:
The All of Us Research Program: Data quality, utility, and diversity. Patterns 3(8): 100570 (2022) - [c142]Tsung-Ting Kuo, Xiaoqian Jiang, Hua Xu, Li Xiong, Lucila Ohno-Machado:
Existing and emerging privacy challenges and solutions for federated data coordination. AMIA 2022 - [c141]Yiming Li, Qiang Wei, Yujia Zhou, Hua Xu:
Fast Textual Corpus Retrieval from Electronic Health Records using PDF Parser and TxtSplit Tools. AMIA 2022 - [c140]Maryamsadat Mohtashamian, Ran Hu, Rashmie Abeysinghe, Xubing Hao, Hua Xu, Licong Cui:
Automated Identification of Missing IS-A Relations in the Human Phenotype Ontology. AMIA 2022 - [c139]Qiang Wei, Xu Zuo, Omer Anjum, Yan Hu, Ryan Denlinger, Elmer V. Bernstam, Martin J. Citardi, Hua Xu:
ClinicalLayoutLM: A Pre-trained Multi-modal Model for Understanding Scanned Document in Electronic Health Records. Big Data 2022: 2821-2827 - [c138]Avisha Das, Salih Selek, Alia R. Warner, Xu Zuo, Yan Hu, Vipina Kuttichi Keloth, Jianfu Li, W. Jim Zheng, Hua Xu:
Conversational Bots for Psychotherapy: A Study of Generative Transformer Models Using Domain-specific Dialogues. BioNLP@ACL 2022: 285-297 - [c137]Shiqiang Tao, Wei-Chun Chou, Jianfu Li, Jingcheng Du, Pritham Ram, Rashmie Abeysinghe, Hua Xu, Xiaoqian Jiang, Peter W. Rose, Lucila Ohno-Machado, Guo-Qiang Zhang:
IMI-CDE: an interactive interface for collaborative mapping of study variables to common data elements. ICHI 2022: 465-468 - [c136]Liwei Wang, Sunyang Fu, Andrew Wen, Xiaoyang Ruan, Huan He, Sijia Liu, Sungrim Moon, Michelle Mai, Irbaz Bin Riaz, Nan Wang, Ping Yang, Hua Xu, Jeremy L. Warner, Hongfang Liu:
Evaluation of mCODE Coverage in EHR: a Scoping Review of Cancer Natural Language Processing. ICHI 2022: 517-518 - [c135]Yan Hu, Yong Chen, Hua Xu:
Improving Sentence Classification in Abstracts of Randomized Controlled Trial using Prompt Learning. ICHI 2022: 606-607 - [c134]Jianping He, Fang Li, Xinyue Hu, Jianfu Li, Yi Nian, Jingqi Wang, Yang Xiang, Qiang Wei, Hua Xu, Cui Tao:
Chemical-Protein Relation Extraction with Pre-trained Prompt Tuning. ICHI 2022: 608-609 - [i9]Yihe Liu, Ziqi Yuan, Huisheng Mao, Zhiyun Liang, Wanqiuyue Yang, Yuanzhe Qiu, Tie Cheng, Xiaoteng Li, Hua Xu, Kai Gao:
Make Acoustic and Visual Cues Matter: CH-SIMS v2.0 Dataset and AV-Mixup Consistent Module. CoRR abs/2209.02604 (2022) - 2021
- [j113]Xu Zuo, Yong Chen, Lucila Ohno-Machado, Hua Xu:
How do we share data in COVID-19 research? A systematic review of COVID-19 datasets in PubMed Central Articles. Briefings Bioinform. 22(2): 800-811 (2021) - [j112]Jingqi Wang, Yuankai Ren, Zhi Zhang, Hua Xu, Yaoyun Zhang:
From Tokenization to Self-Supervision: Building a High-Performance Information Extraction System for Chemical Reactions in Patents. Frontiers Res. Metrics Anal. 6: 691105 (2021) - [j111]Jingqi Wang, Noor Abu-El-Rub, Josh Gray, Huy Anh Pham, Yujia Zhou, Frank J. Manion, Mei Liu, Xing Song, Hua Xu, Masoud Rouhizadeh, Yaoyun Zhang:
COVID-19 SignSym: a fast adaptation of a general clinical NLP tool to identify and normalize COVID-19 signs and symptoms to OMOP common data model. J. Am. Medical Informatics Assoc. 28(6): 1275-1283 (2021) - [j110]Jingcheng Du, Yang Xiang, Madhuri Sankaranarayanapillai, Meng Zhang, Jingqi Wang, Yuqi Si, Huy Anh Pham, Hua Xu, Yong Chen, Cui Tao:
Extracting postmarketing adverse events from safety reports in the vaccine adverse event reporting system (VAERS) using deep learning. J. Am. Medical Informatics Assoc. 28(7): 1393-1400 (2021) - [j109]Jihoon Kim, Larissa Neumann, Paulina Paul, Michele E. Day, Michael Aratow, Douglas S. Bell, Jason N. Doctor, Ludwig Christian G. Hinske, Xiaoqian Jiang, Katherine K. Kim, Michael E. Matheny, Daniella Meeker, Mark J. Pletcher, Lisa M. Schilling, Spencer L. SooHoo, Hua Xu, Kai Zheng, Lucila Ohno-Machado:
Privacy-protecting, reliable response data discovery using COVID-19 patient observations. J. Am. Medical Informatics Assoc. 28(8): 1765-1776 (2021) - [j108]Yi Guo, Yahan Zhang, Tianchen Lyu, Mattia C. F. Prosperi, Fei Wang, Hua Xu, Jiang Bian:
The application of artificial intelligence and data integration in COVID-19 studies: a scoping review. J. Am. Medical Informatics Assoc. 28(9): 2050-2067 (2021) - [j107]Jianfu Li, Yujia Zhou, Xiaoqian Jiang, Karthik Natarajan, Serguei V. S. Pakhomov, Hongfang Liu, Hua Xu:
Are synthetic clinical notes useful for real natural language processing tasks: A case study on clinical entity recognition. J. Am. Medical Informatics Assoc. 28(10): 2193-2201 (2021) - [j106]Kang Zhao, Hua Xu, Yue Cheng, Xiaoteng Li, Kai Gao:
Representation iterative fusion based on heterogeneous graph neural network for joint entity and relation extraction. Knowl. Based Syst. 219: 106888 (2021) - [c133]Hanlei Zhang, Xiaoteng Li, Hua Xu, Panpan Zhang, Kang Zhao, Kai Gao:
TEXTOIR: An Integrated and Visualized Platform for Text Open Intent Recognition. ACL (demo) 2021: 167-174 - [c132]Laila Rasmy, Bijun S. Kannadath, Masayuki Nigo, Ziqian Xie, Bingyu Mao, Khush A. Patel, Yujia Zhou, Xiao Dong, Hua Xu, Degui Zhi:
Generalizable Gated Recurrent Neural Network based model to predict COVID-19 patient outcomes on admission. AMIA 2021 - [c131]Laila Rasmy, Masayuki Nigo, Bijun S. Kannadath, Ziqian Xie, Bingyu Mao, Khush A. Patel, Wanheng Zhang, Yujia Zhou, Angela Ross, Hua Xu, Degui Zhi:
CovRNN: predicting outcomes of COVID-19 patients on admission using their electronic health records with minimal data processing. AMIA 2021 - [c130]Hong Guan, Jianfu Li, Hua Xu, Murthy V. Devarakonda:
Robustly Pre-Trained Neural Model for Direct Temporal Relation Extraction. ICHI 2021: 501-502 - [c129]Jianfu Li, Qiang Wei, Omid Ghiasvand, Miao Chen, Victor S. Lobanov, Chunhua Weng, Hua Xu:
Study of Pre-trained Language Models for Named Entity Recognition in Clinical Trial Eligibility Criteria from Multiple Corpora. ICHI 2021: 511-512 - [i8]Dalton Schutte, Jake Vasilakes, Anusha Bompelli, Yuqi Zhou, Marcelo Fiszman, Hua Xu, Halil Kilicoglu, Jeffrey R. Bishop, Terrence Adam, Rui Zhang:
Discovering novel drug-supplement interactions using a dietary supplements knowledge graph generated from the biomedical literature. CoRR abs/2106.12741 (2021) - [i7]Greg M. Silverman, Raymond L. Finzel, Michael V. Heinz, Jake Vasilakes, Jacob C. Solinsky, Reed McEwan, Benjamin C. Knoll, Christopher J. Tignanelli, Hongfang Liu, Hua Xu, Xiaoqian Jiang, Genevieve B. Melton, Serguei V. S. Pakhomov:
An Empirical Study of UMLS Concept Extraction from Clinical Notes using Boolean Combination Ensembles. CoRR abs/2108.02255 (2021) - [i6]Laila Rasmy, Jie Zhu, Zhiheng Li, Xin Hao, Hong Thoai Tran, Yujia Zhou, Firat Tiryaki, Yang Xiang, Hua Xu, Degui Zhi:
Simple Recurrent Neural Networks is all we need for clinical events predictions using EHR data. CoRR abs/2110.00998 (2021) - [i5]Sijia Liu, Andrew Wen, Liwei Wang, Huan He, Sunyang Fu, Robert T. Miller, Andrew E. Williams, Daniel R. Harris, Ramakanth Kavuluru, Mei Liu, Noor Abu-El-Rub, Rui Zhang, John D. Osborne, Masoud Rouhizadeh, Yongqun He, Emily R. Pfaff, Christopher G. Chute, Tim Duong, Melissa A. Haendel, Rafael Fuentes, Peter Szolovits, Hua Xu, Hongfang Liu:
An Open Natural Language Processing Development Framework for EHR-based Clinical Research: A case demonstration using the National COVID Cohort Collaborative (N3C). CoRR abs/2110.10780 (2021) - 2020
- [j105]Qiang Wei, Yaoyun Zhang, Muhammad Amith, Rebecca Lin, Jenay Lapeyrolerie, Cui Tao, Hua Xu:
Recognizing software names in biomedical literature using machine learning. Health Informatics J. 26(1) (2020) - [j104]Fang Li, Guozheng Rao, Jingcheng Du, Yang Xiang, Yaoyun Zhang, Salih Selek, Jane Elizabeth Hamilton, Hua Xu, Cui Tao:
Ontological representation-oriented term normalization and standardization of the Research Domain Criteria. Health Informatics J. 26(2): 726-737 (2020) - [j103]Jianhong Luo, Jingcheng Du, Cui Tao, Hua Xu, Yaoyun Zhang:
Exploring temporal suicidal behavior patterns on social media: Insight from Twitter analytics. Health Informatics J. 26(2): 738-752 (2020) - [j102]Qiang Wei, Zongcheng Ji, Zhiheng Li, Jingcheng Du, Jingqi Wang, Jun Xu, Yang Xiang, Firat Tiryaki, Stephen Wu, Yaoyun Zhang, Cui Tao, Hua Xu:
A study of deep learning approaches for medication and adverse drug event extraction from clinical text. J. Am. Medical Informatics Assoc. 27(1): 13-21 (2020) - [j101]Rui Duan, Mary Regina Boland, Zixuan Liu, Yue Liu, Howard H. Chang, Hua Xu, Haitao Chu, Christopher H. Schmid, Christopher B. Forrest, John H. Holmes, Martijn J. Schuemie, Jesse A. Berlin, Jason H. Moore, Yong Chen:
Learning from electronic health records across multiple sites: A communication-efficient and privacy-preserving distributed algorithm. J. Am. Medical Informatics Assoc. 27(3): 376-385 (2020) - [j100]Stephen Wu, Kirk Roberts, Surabhi Datta, Jingcheng Du, Zongcheng Ji, Yuqi Si, Sarvesh Soni, Qiong Wang, Qiang Wei, Yang Xiang, Bo Zhao, Hua Xu:
Deep learning in clinical natural language processing: a methodical review. J. Am. Medical Informatics Assoc. 27(3): 457-470 (2020) - [j99]Rui Duan, Chongliang Luo, Martijn J. Schuemie, Jiayi Tong, C. Jason Liang, Howard H. Chang, Mary Regina Boland, Jiang Bian, Hua Xu, John H. Holmes, Christopher B. Forrest, Sally C. Morton, Jesse A. Berlin, Jason H. Moore, Kevin B. Mahoney, Yong Chen:
Learning from local to global: An efficient distributed algorithm for modeling time-to-event data. J. Am. Medical Informatics Assoc. 27(7): 1028-1036 (2020) - [j98]Fang Li, Jingcheng Du, Yongqun He, Hsing-yi Song, Mohcine Madkour, Guozheng Rao, Yang Xiang, Yi Luo, Henry W. Chen, Sijia Liu, Liwei Wang, Hongfang Liu, Hua Xu, Cui Tao:
Time event ontology (TEO): to support semantic representation and reasoning of complex temporal relations of clinical events. J. Am. Medical Informatics Assoc. 27(7): 1046-1056 (2020) - [j97]Xiao Dong, Jianfu Li, Ekin Soysal, Jiang Bian, Scott L. DuVall, Elizabeth Hanchrow, Hongfang Liu, Kristine E. Lynch, Michael E. Matheny, Karthik Natarajan, Lucila Ohno-Machado, Serguei Pakhomov, Ruth Madeleine Reeves, Amy M. Sitapati, Swapna Abhyankar, Theresa Cullen, Jami Deckard, Xiaoqian Jiang, Robert Murphy, Hua Xu:
COVID-19 TestNorm: A tool to normalize COVID-19 testing names to LOINC codes. J. Am. Medical Informatics Assoc. 27(9): 1437-1442 (2020) - [j96]Laila Rasmy, Firat Tiryaki, Yujia Zhou, Yang Xiang, Cui Tao, Hua Xu, Degui Zhi:
Representation of EHR data for predictive modeling: a comparison between UMLS and other terminologies. J. Am. Medical Informatics Assoc. 27(10): 1593-1599 (2020) - [j95]Jean Louis Raisaro, Francesco Marino, Juan Ramón Troncoso-Pastoriza, Raphaelle Beau-Lejdstrom, Riccardo Bellazzi, Robert Murphy, Elmer V. Bernstam, Henry Wang, Mauro Bucalo, Yong Chen, Assaf Gottlieb, Arif Ozgun Harmanci, Miran Kim, Yejin Kim, Jeffrey G. Klann, Catherine Klersy, Bradley A. Malin, Marie Méan, Fabian Prasser, Luigia Scudeller, Ali Torkamani, Julien Vaucher, Mamta Puppala, Stephen T. C. Wong, Milana Frenkel-Morgenstern, Hua Xu, Baba Maiyaki Musa, Abdulrazaq G. Habib, Trevor Cohen, Adam B. Wilcox, Hamisu M. Salihu, Heidi Sofia, Xiaoqian Jiang, Jean-Pierre Hubaux:
SCOR: A secure international informatics infrastructure to investigate COVID-19. J. Am. Medical Informatics Assoc. 27(11): 1721-1726 (2020) - [j94]Qiong Wang, Zongcheng Ji, Jingqi Wang, Stephen Wu, Weiyan Lin, Wenzhen Li, Li Ke, Guohong Xiao, Qing Jiang, Hua Xu, Yi Zhou:
A study of entity-linking methods for normalizing Chinese diagnosis and procedure terms to ICD codes. J. Biomed. Informatics 105: 103418 (2020) - [j93]Muhammad Amith, Rebecca Lin, Licong Cui, Dennis Wang, Anna Zhu, Grace Xiong, Hua Xu, Kirk Roberts, Cui Tao:
Conversational ontology operator: patient-centric vaccine dialogue management engine for spoken conversational agents. BMC Medical Informatics Decis. Mak. 20-S(4): 259 (2020) - [c128]Hongfang Liu, Xiaoqian Jiang, Serguei V. S. Pakhomov, Chunhua Weng, Hua Xu:
The Open Health Natural Language Processing Collaboratory. AMIA 2020 - [c127]Yaoyun Zhang, Jingqi Wang, Hua Xu:
LANN: An integrated online annotation tool for information extraction. AMIA 2020 - [c126]Xu Zuo, Jianfu Li, Bo Zhao, Yujia Zhou, Xiao Dong, Jon D. Duke, Karthik Natarajan, George Hripcsak, Nigam Shah, Juan M. Banda, Ruth M. Reeves, Hua Xu:
Normalizing Clinical Document Titles to LOINC Document Ontology: an Initial Study. AMIA 2020 - [c125]Jingqi Wang, William Christopher Mathews, Huy Anh Pham, Hua Xu, Yaoyun Zhang:
Opioid2FHIR: A system for extracting FHIR-compatible opioid prescriptions from clinical text. BIBM 2020: 1748-1751 - [c124]Xi Yang, Hanyuan Yang, Tianchen Lyu, Shuang Yang, Yi Guo, Jiang Bian, Hua Xu, Yonghui Wu:
A Natural Language Processing Tool to Extract Quantitative Smoking Status from Clinical Narratives. ICHI 2020: 1-2 - [c123]Qiang Wei, Yujia Zhou, Bo Zhao, Xinyue Hu, Qiaozhu Mei, Cui Tao, Hua Xu:
Named Entity Recognition from Table Headers in Randomized Controlled Trial Articles. ICHI 2020: 1-2 - [i4]Hong Guan, Jianfu Li, Hua Xu, Murthy V. Devarakonda:
Robustly Pre-trained Neural Model for Direct Temporal Relation Extraction. CoRR abs/2004.06216 (2020)
2010 – 2019
- 2019
- [j92]Yaoyun Zhang, Olivia R. Zhang, Rui Li, Aaron Flores, Salih Selek, Xiang Y. Zhang, Hua Xu:
Psychiatric stressor recognition from clinical notes to reveal association with suicide. Health Informatics J. 25(4) (2019) - [j91]Yuqi Si, Jingqi Wang, Hua Xu, Kirk E. Roberts:
Enhancing clinical concept extraction with contextual embeddings. J. Am. Medical Informatics Assoc. 26(11): 1297-1304 (2019) - [j90]Qiang Wei, Yukun Chen, Mandana Salimi, Joshua C. Denny, Qiaozhu Mei, Thomas A. Lasko, Qingxia Chen, Stephen Wu, Amy Franklin, Trevor Cohen, Hua Xu:
Cost-aware active learning for named entity recognition in clinical text. J. Am. Medical Informatics Assoc. 26(11): 1314-1322 (2019) - [j89]Xue Shi, Yingping Yi, Ying Xiong, Buzhou Tang, Qingcai Chen, Xiaolong Wang, Zongcheng Ji, Yaoyun Zhang, Hua Xu:
Extracting entities with attributes in clinical text via joint deep learning. J. Am. Medical Informatics Assoc. 26(12): 1584-1591 (2019) - [j88]Zengjian Liu, Xiaolong Wang, Qingcai Chen, Buzhou Tang, Hua Xu:
Temporal indexing of medical entity in Chinese clinical notes. BMC Medical Informatics Decis. Mak. 19-S(1): 17:1-17:11 (2019) - [j87]Zhiheng Li, Zhihao Yang, Chen Shen, Jun Xu, Yaoyun Zhang, Hua Xu:
Integrating shortest dependency path and sentence sequence into a deep learning framework for relation extraction in clinical text. BMC Medical Informatics Decis. Mak. 19-S(1): 22:1-22:8 (2019) - [j86]Yang Xiang, Jun Xu, Yuqi Si, Zhiheng Li, Laila Rasmy, Yujia Zhou, Firat Tiryaki, Fang Li, Yaoyun Zhang, Yonghui Wu, Xiaoqian Jiang, W. Jim Zheng, Degui Zhi, Cui Tao, Hua Xu:
Time-sensitive clinical concept embeddings learned from large electronic health records. BMC Medical Informatics Decis. Mak. 19-S(2): 139-148 (2019) - [j85]Ying Xiong, Zhongmin Wang, Dehuan Jiang, Xiaolong Wang, Qingcai Chen, Hua Xu, Jun Yan, Buzhou Tang:
A fine-grained Chinese word segmentation and part-of-speech tagging corpus for clinical text. BMC Medical Informatics Decis. Mak. 19-S(2): 179-184 (2019) - [j84]Yaoyun Zhang, Firat Tiryaki, Min Jiang, Hua Xu:
Parsing clinical text using the state-of-the-art deep learning based parsers: a systematic comparison. BMC Medical Informatics Decis. Mak. 19-S(3): 51-58 (2019) - [j83]V. G. Vinod Vydiswaran, Yaoyun Zhang, Yanshan Wang, Hua Xu:
Special issue of BMC medical informatics and decision making on health natural language processing. BMC Medical Informatics Decis. Mak. 19-S(3): 76:1-76:3 (2019) - [j82]Yanshan Wang, Hua Xu, Özlem Uzuner:
Editorial: The second international workshop on health natural language processing (HealthNLP 2019). BMC Medical Informatics Decis. Mak. 19-S(5): 1 (2019) - [j81]Jun Xu, Zhiheng Li, Qiang Wei, Yonghui Wu, Yang Xiang, Hee-Jin Lee, Yaoyun Zhang, Stephen Wu, Hua Xu:
Applying a deep learning-based sequence labeling approach to detect attributes of medical concepts in clinical text. BMC Medical Informatics Decis. Mak. 19-S(5): 8 (2019) - [c122]Liwei Wang, Jason A. Wampfler, Angela Dispenzieri, Hua Xu, Ping Yang, Hongfang Liu:
Achievability to Extract Specific Date Information for Cancer Research. AMIA 2019 - [c121]Jingqi Wang, Yaoyun Zhang, Hua Xu:
CLAMP-ATR: A deep learning pipeline for attribute recognition of clinical concepts. AMIA 2019 - [c120]Qiang Wei, Zongcheng Ji, Yuqi Si, Jingcheng Du, Jingqi Wang, Firat Tiryaki, Stephen Wu, Cui Tao, Kirk Roberts, Hua Xu:
Relation Extraction from Clinical Narratives Using Pre-trained Language Models. AMIA 2019 - [c119]Muhammad Amith, Licong Cui, Kirk Roberts, Hua Xu, Cui Tao:
Ontology of Consumer Health Vocabulary: providing a formal and interoperable semantic resource for linking lay language and medical terminology. BIBM 2019: 1177-1178 - [c118]Jun Xu, Zhiheng Li, Qiang Wei, Yonghui Wu, Yang Xiang, Hee-Jin Lee, Yaoyun Zhang, Stephen Wu, Hua Xu:
Detect Attributes of Medical Concepts via Sequence Labeling. ICHI 2019: 1-2 - [c117]Ergin Soysal, Jeremy L. Warner, Jingqi Wang, Min Jiang, Krysten Harvey, Sandeep Kumar Jain, Xiao Dong, Hsing-yi Song, Harish Siddhanamatha, Liwei Wang, Qi Dai, Qingxia Chen, Xianglin Du, Cui Tao, Ping Yang, Joshua Charles Denny, Hongfang Liu, Hua Xu:
Developing Customizable Cancer Information Extraction Modules for Pathology Reports Using CLAMP. MedInfo 2019: 1041-1045 - [c116]Jiatong Li, Kai Zheng, Hua Xu, Qiaozhu Mei, Yue Wang:
The Strength of the Weakest Supervision: Topic Classification Using Class Labels. NAACL-HLT (Student Research Workshop) 2019: 22-28 - [c115]Muhammad Amith, Rebecca Lin, Licong Cui, Dennis Wang, Anna Zhu, Grace Xiong, Hua Xu, Kirk Roberts, Cui Tao:
An Ontology-Powered Dialogue Engine For Patient Communication of Vaccines. SEPDA@ISWC 2019: 24-30 - [i3]Yuqi Si, Jingqi Wang, Hua Xu, Kirk Roberts:
Enhancing Clinical Concept Extraction with Contextual Embedding. CoRR abs/1902.08691 (2019) - [i2]Zongcheng Ji, Qiang Wei, Hua Xu:
BERT-based Ranking for Biomedical Entity Normalization. CoRR abs/1908.03548 (2019) - 2018
- [j80]Shumei Miao, Tingyu Xu, Yonghui Wu, Hui Xie, Jingqi Wang, Shenqi Jing, Yaoyun Zhang, Xiaoliang Zhang, Yinshuang Yang, Xin Zhang, Tao Shan, Li Wang, Hua Xu, Shui Wang, Yun Liu:
Extraction of BI-RADS findings from breast ultrasound reports in Chinese using deep learning approaches. Int. J. Medical Informatics 119: 17-21 (2018) - [j79]Xiaoling Chen, Anupama E. Gururaj, Ibrahim Burak Özyurt, Ruiling Liu, Ergin Soysal, Trevor Cohen, Firat Tiryaki, Yueling Li, Nansu Zong, Min Jiang, Deevakar Rogith, Mandana Salimi, Hyeon-Eui Kim, Philippe Rocca-Serra, Alejandra N. González-Beltrán, Claudiu Farcas, Todd Johnson, Ronald Margolis, George Alter, Susanna-Assunta Sansone, Ian Fore, Lucila Ohno-Machado, Jeffrey S. Grethe, Hua Xu:
DataMed - an open source discovery index for finding biomedical datasets. J. Am. Medical Informatics Assoc. 25(3): 300-308 (2018) - [j78]Ergin Soysal, Jingqi Wang, Min Jiang, Yonghui Wu, Serguei Pakhomov, Hongfang Liu, Hua Xu:
CLAMP - a toolkit for efficiently building customized clinical natural language processing pipelines. J. Am. Medical Informatics Assoc. 25(3): 331-336 (2018) - [j77]Ram Dixit, Deevakar Rogith, Vidya Narayana, Mandana Salimi, Anupama E. Gururaj, Lucila Ohno-Machado, Hua Xu, Todd R. Johnson:
User needs analysis and usability assessment of DataMed - a biomedical data discovery index. J. Am. Medical Informatics Assoc. 25(3): 337-344 (2018) - [j76]Jing Huang, Rui Duan, Rebecca A. Hubbard, Yonghui Wu, Jason H. Moore, Hua Xu, Yong Chen:
PIE: A prior knowledge guided integrated likelihood estimation method for bias reduction in association studies using electronic health records data. J. Am. Medical Informatics Assoc. 25(3): 345-352 (2018) - [j75]Yue Wang, Kai Zheng, Hua Xu, Qiaozhu Mei:
Interactive medical word sense disambiguation through informed learning. J. Am. Medical Informatics Assoc. 25(7): 800-808 (2018) - [j74]Li Wang, Yaoyun Zhang, Min Jiang, Jingqi Wang, Jiancheng Dong, Yun Liu, Cui Tao, Guoqian Jiang, Yi Zhou, Hua Xu:
Toward a normalized clinical drug knowledge base in China - applying the RxNorm model to Chinese clinical drugs. J. Am. Medical Informatics Assoc. 25(7): 809-818 (2018) - [j73]Laila Rasmy, Yonghui Wu, Ningtao Wang, Xin Geng, W. Jim Zheng, Fei Wang, Hulin Wu, Hua Xu, Degui Zhi:
A study of generalizability of recurrent neural network-based predictive models for heart failure onset risk using a large and heterogeneous EHR data set. J. Biomed. Informatics 84: 11-16 (2018) - [j72]Guocai Chen, Alex Tsoi, Hua Xu, W. Jim Zheng:
Predict effective drug combination by deep belief network and ontology fingerprints. J. Biomed. Informatics 85: 149-154 (2018) - [j71]Xin Zhang, Li Wang, Shumei Miao, Hua Xu, Yuechuchu Yin, Yueshi Zhu, Zuolei Dai, Tao Shan, Shenqi Jing, Jian Wang, Xiaoliang Zhang, Zhongqiu Huang, Zhongmin Wang, Jianjun Guo, Yun Liu:
Analysis of treatment pathways for three chronic diseases using OMOP CDM. J. Medical Syst. 42(12): 260:1-260:12 (2018) - [j70]Hee-Jin Lee, Yaoyun Zhang, Min Jiang, Jun Xu, Cui Tao, Hua Xu:
Identifying direct temporal relations between time and events from clinical notes. BMC Medical Informatics Decis. Mak. 18(S-2): 23-34 (2018) - [j69]Jingcheng Du, Yaoyun Zhang, Jianhong Luo, Yuxi Jia, Qiang Wei, Cui Tao, Hua Xu:
Extracting psychiatric stressors for suicide from social media using deep learning. BMC Medical Informatics Decis. Mak. 18(S-2): 77-87 (2018) - [c114]Jing An, Mandana Salimi, Anupama E. Gururaj, Cui Tao, Degui Zhi, Hua Xu:
Development of HeartData, a Data Discovery Index Prototype for Cardiovascular data. AMIA 2018 - [c113]Halil Kilicoglu, Aurélie Névéol, Timothy Clark, Hua Xu, Neil R. Smalheiser:
Methods and Tools to Enhance Rigor and Reproducibility of Biomedical Research. AMIA 2018 - [c112]Lingyi Tang, Yaoyun Zhang, Hua Xu:
Building a Biomedical Bilingual Parallel Corpus between Chinese and English from PubMed. AMIA 2018 - [c111]Qiang Wei, Amy Franklin, Trevor Cohen, Hua Xu:
Clinical text annotation - what factors are associated with the cost of time? AMIA 2018 - [c110]Yonghui Wu, Xi Yang, Jiang Bian, Yi Guo, Hua Xu, William R. Hogan:
Combine Factual Medical Knowledge and Distributed Word Representation to Improve Clinical Named Entity Recognition. AMIA 2018 - [c109]Jun Xu, Yaoyun Zhang, Jingcheng Du, Jingqi Wang, Firat Tiryaki, Hua Xu:
Detecting Anatomical Entities in Clinical Text. AMIA 2018 - [c108]Yaoyun Zhang, Qiang Wei, Jingqi Wang, Hua Xu:
CLAMP-PA: A machine learning based pre-annotation pipeline for corpus construction of clinical concepts. AMIA 2018 - [c107]Xiao Dong, Yaoyun Zhang, Hua Xu, Chunhua Weng:
Guideline-driven data quality assessment- A case study of warfarin management. AMIA 2018 - [c106]Jianho