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ORCIDAna T. Freitas
Person information
- affiliation: Instituto Superior Técnico, Lisbon, Portugal
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2020 – today
- 2024
[c16]Javier Montoya
, Francisco Fernandes, Ana Teresa Freitas:
Microbiome Classification in Colon Cancer Patients Using Chaos Game Representations and CNN Models. IWBBIO (2) 2024: 288-299- 2023
- [c15]André Salgado, Francisco Fernandes, Ana Teresa Freitas:
CSA-MEM: Enhancing Circular DNA Multiple Alignment Through Text Indexing Algorithms. ISBRA 2023: 509-517
2010 – 2019
- 2018
- [j18]Miguel Monteiro, Ana Catarina Fonseca, Ana Teresa Freitas, Teresa Pinho e Melo, Alexandre P. Francisco, José M. Ferro, Arlindo L. Oliveira:
Using Machine Learning to Improve the Prediction of Functional Outcome in Ischemic Stroke Patients. IEEE ACM Trans. Comput. Biol. Bioinform. 15(6): 1953-1959 (2018) - 2017
- [i2]Jorge S. Oliveira, José Borbinha, Ana Teresa Freitas:
A Virtual Research Environment for the Oil and Gas Domain. ERCIM News 2017(109) (2017) - 2015
- [j17]Catia M. Machado, Dietrich Rebholz-Schuhmann, Ana T. Freitas, Francisco M. Couto:
The semantic web in translational medicine: current applications and future directions. Briefings Bioinform. 16(1): 89-103 (2015) - [j16]Jorge S. Oliveira, Wydemberg Araújo, Ana Isabela Lopes Sales, Alaine de Brito Guerra, Sinara Carla da Silva Araújo, Ana Tereza Ribeiro de Vasconcelos, Lucymara F. Agnez-Lima, Ana Teresa Freitas:
BioSurfDB: knowledge and algorithms to support biosurfactants and biodegradation studies. Database J. Biol. Databases Curation 2015 (2015) - 2014
- [j15]Francisco Fernandes, Ana T. Freitas:
slaMEM: efficient retrieval of maximal exact matches using a sampled LCP array. Bioinform. 30(4): 464-471 (2014) - [j14]Filipe Ferreira, Miguel E. Coimbra, Raquel Bairrão, Ricardo Viera, Ana T. Freitas, Luís M. S. Russo, José Borbinha:
Data Management in Metagenomics: A Risk Management Approach. Int. J. Digit. Curation 9(1): 41-56 (2014) - [j13]Miguel Cacho Teixeira, Pedro Tiago Monteiro, Joana Fernandes Guerreiro, Joana Pinho Gonçalves, Nuno Pereira Mira, Sandra Costa dos Santos, Tânia Rodrigues Cabrito, Margarida Palma, Catarina Costa, Alexandre Paulo Francisco, Sara Cordeiro Madeira, Arlindo Limede Oliveira, Ana Teresa Freitas, Isabel Sá-Correia:
The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae. Nucleic Acids Res. 42(Database-Issue): 161-166 (2014) - 2013
- [j12]Catia M. Machado, Ana T. Freitas, Francisco M. Couto:
Enrichment analysis applied to disease prognosis. J. Biomed. Semant. 4: 21 (2013) - [c14]Miguel E. Coimbra, Francisco Fernandes, Luís M. S. Russo, Ana T. Freitas:
Parallel efficient aligner of pyrosequencing reads. EuroMPI 2013: 241-246 - 2012
- [j11]Nuno D. Mendes, Steffen Heyne, Ana T. Freitas, Marie-France Sagot, Rolf Backofen:
Navigating the unexplored seascape of pre-miRNA candidates in single-genome approaches. Bioinform. 28(23): 3034-3041 (2012) - [c13]Catia M. Machado, Francisco M. Couto, Alexandra R. Fernandes, Susana Santos, Ana T. Freitas:
Toward a Translational Medicine Approach for Hypertrophic Cardiomyopathy. ITBAM 2012: 151-165 - [e1]Ana T. Freitas, Arcadi Navarro:
Bioinformatics for Personalized Medicine - 10th Spanish Symposium, JBI 2010, Torremolinos, Spain, October 27-29, 2010. Revised Selected Papers. Lecture Notes in Computer Science 6620, Springer 2012, ISBN 978-3-642-28061-0 [contents] - 2011
- [j10]Francisco Fernandes, Paulo G. S. da Fonseca, Luís M. S. Russo, Arlindo L. Oliveira, Ana T. Freitas:
Efficient alignment of pyrosequencing reads for re-sequencing applications. BMC Bioinform. 12: 163 (2011) - [j9]Dulce Calçada, Susana Vinga, Ana T. Freitas, Arlindo L. Oliveira:
Quantitative Modeling of the Saccharomyces cerevisiae Flr1 regulatory Network Using an S-System Formalism. J. Bioinform. Comput. Biol. 9(5): 613-630 (2011) - [j8]Dário Abdulrehman, Pedro T. Monteiro, Miguel C. Teixeira, Nuno P. Mira, Artur B. Lourenço, Sandra Costa dos Santos, Tânia Rodrigues Cabrito, Alexandre P. Francisco, Sara C. Madeira, Ricardo Santos Aires, Arlindo L. Oliveira, Isabel Sá-Correia, Ana T. Freitas:
YEASTRACT: providing a programmatic access to curated transcriptional regulatory associations in Saccharomyces cerevisiae through a web services interface. Nucleic Acids Res. 39(Database-Issue): 136-140 (2011) - [c12]Dulce Calçada, Susana Vinga, Ana T. Freitas, Arlindo L. Oliveira:
Quantitative Modeling the Saccharomyces cerevisiae FLR1 Regulatory Network Using an S-System Formalism. HISB 2011: 69-75 - 2010
- [c11]Alexandre P. Francisco, Sophie Schbath, Ana T. Freitas, Arlindo L. Oliveira:
Using graph modularity analysis to identify transcription factor binding sites. BIBM Workshops 2010: 19-26 - [c10]Catia M. Machado, Francisco M. Couto, Alexandra R. Fernandes, Susana Santos, Nuno Cardim, Ana T. Freitas:
Semantic characterization of hypertrophic cardiomyopathy disease. BIBM Workshops 2010: 432-439 - [c9]Pedro T. Monteiro, Ana T. Freitas, Delphine Ropers, Radu Mateescu, Hidde de Jong:
Modeling and formal verification of biological regulatory networks: An integrative approach. BIBM Workshops 2010: 812-813 - [i1]Catia M. Machado, Francisco M. Couto, Alexandra R. Fernandes, Susana Santos, Nuno Cardim, Ana T. Freitas:
Unraveling Hypertrophic Cardiomyopathy Variability. ERCIM News 2010(82): 48-49 (2010)
2000 – 2009
- 2009
- [j7]Francisco Fernandes, Luísa Pereira, Ana T. Freitas:
CSA: An efficient algorithm to improve circular DNA multiple alignment. BMC Bioinform. 10 (2009) - [j6]Pedro T. Monteiro, Estelle Dumas, Bruno Besson, Radu Mateescu, Michel Page, Ana T. Freitas, Hidde de Jong:
A service-oriented architecture for integrating the modeling and formal verification of genetic regulatory networks. BMC Bioinform. 10: 450 (2009) - 2008
- [j5]Ana C. Casimiro, Susana Vinga, Ana T. Freitas, Arlindo L. Oliveira:
An analysis of the positional distribution of DNA motifs in promoter regions and its biological relevance. BMC Bioinform. 9 (2008) - [j4]Pedro T. Monteiro, Nuno D. Mendes, Miguel C. Teixeira, Sofia d'Orey, Sandra Tenreiro, Nuno P. Mira, Hélio Pais, Alexandre P. Francisco, Alexandra M. Carvalho, Artur B. Lourenço, Isabel Sá-Correia, Arlindo L. Oliveira, Ana T. Freitas:
YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae. Nucleic Acids Res. 36(Database-Issue): 132-136 (2008) - [c8]Pedro T. Monteiro, Delphine Ropers, Radu Mateescu, Ana T. Freitas, Hidde de Jong:
Temporal Logic Patterns for Querying Qualitative Models of Genetic Regulatory Networks. ECAI 2008: 229-233 - [c7]Pedro T. Monteiro, Delphine Ropers, Radu Mateescu, Ana T. Freitas, Hidde de Jong:
Temporal logic patterns for querying dynamic models of cellular interaction networks. ECCB 2008: 227-233 - [c6]Alexandre P. Francisco, Arlindo L. Oliveira, Ana T. Freitas:
Identification of Transcription Factor Binding Sites in Promoter Regions by Modularity Analysis of the Motif Co-occurrence Graph. ISBRA 2008: 220-231 - 2006
- [j3]Nuno D. Mendes, Ana C. Casimiro, Pedro M. Santos, Isabel Sá-Correia, Arlindo L. Oliveira, Ana T. Freitas:
MUSA: a parameter free algorithm for the identification of biologically significant motifs. Bioinform. 22(24): 2996-3002 (2006) - [j2]Miguel C. Teixeira, Pedro T. Monteiro, Pooja Jain, Sandra Tenreiro, Alexandra R. Fernandes, Nuno P. Mira, Marta Alenquer, Ana T. Freitas, Arlindo L. Oliveira, Isabel Sá-Correia:
The YEASTRACT database: a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae. Nucleic Acids Res. 34(Database-Issue): 446-451 (2006) - [j1]Alexandra M. Carvalho, Ana T. Freitas, Arlindo L. Oliveira, Marie-France Sagot:
An Efficient Algorithm for the Identification of Structured Motifs in DNA Promoter Sequences. IEEE ACM Trans. Comput. Biol. Bioinform. 3(2): 126-140 (2006) - 2005
- [c5]Alexandra M. Carvalho, Ana T. Freitas, Arlindo L. Oliveira, Marie-France Sagot:
A highly scalable algorithm for the extraction of CIS-regulatory regions. APBC 2005: 273-282 - 2004
- [c4]Alexandra M. Carvalho, Arlindo L. Oliveira, Ana T. Freitas, Marie-France Sagot:
A parallel algorithm for the extraction of structured motifs. SAC 2004: 147-153 - [c3]Alexandra M. Carvalho, Ana T. Freitas, Arlindo L. Oliveira, Marie-France Sagot:
Efficient Extraction of Structured Motifs Using Box-Links. SPIRE 2004: 267-268 - 2003
- [c2]Ana T. Freitas, Arlindo L. Oliveira:
Implicit Resolution of the Chapman-Kolmogorov Equations for Sequential Circuits: An Application in Power Estimation. DATE 2003: 10764-10769 - 2001
- [c1]Ana T. Freitas, Arlindo L. Oliveira:
Circuit partitioning techniques for power estimation using the full set of input correlations. ICECS 2001: 903-907
Coauthor Index
aka: Arlindo Limede Oliveira
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