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2010 – 2019
- 2015
[j10]Seyed Hamid Mirebrahim, Timothy J. Close, Stefano Lonardi
:
De novo meta-assembly of ultra-deep sequencing data. Bioinform. 31(12): 9-16 (2015)- [j9]Stefano Lonardi, Seyed Hamid Mirebrahim, Steve Wanamaker, Matthew Alpert, Gianfranco Ciardo, Denisa Duma, Timothy J. Close:
When less is more: 'slicing' sequencing data improves read decoding accuracy and de novo assembly quality. Bioinform. 31(18): 2972-2980 (2015) - [c8]Denise Duma, Francesca Cordero, Marco Beccuti, Gianfranco Ciardo, Timothy J. Close, Stefano Lonardi:
Scrible: Ultra-Accurate Error-Correction of Pooled Sequenced Reads. WABI 2015: 162-174 - 2014
- [c7]Rachid Ounit, Timothy J. Close, Steve Wanamaker, Stefano Lonardi:
CLARK, accurate and efficient classification of DNA sequences. BCB 2014: 602 - [c6]Seyed Hamid Mirebrahim, Timothy J. Close, Stefano Lonardi:
De novo assembly of ultra-deep sequencing data. BCB 2014: 609 - 2013
- [j8]Stefano Lonardi, Denisa Duma, Matthew Alpert, Francesca Cordero, Marco Beccuti, Prasanna R. Bhat, Yonghui Wu, Gianfranco Ciardo, Burair Alsaihati, Yaqin Ma, Steve Wanamaker, Josh Resnik, Serdar Bozdag, Ming-Cheng Luo, Timothy J. Close:
Combinatorial Pooling Enables Selective Sequencing of the Barley Gene Space. PLoS Comput. Biol. 9(4) (2013) - [j7]Serdar Bozdag, Timothy J. Close, Stefano Lonardi:
A Graph-Theoretical Approach to the Selection of the Minimum Tiling Path from a Physical Map. IEEE ACM Trans. Comput. Biol. Bioinform. 10(2): 352-360 (2013) - [c5]Denisa Duma, Mary Wootters, Anna C. Gilbert, Hung Q. Ngo, Atri Rudra, Matthew Alpert, Timothy J. Close, Gianfranco Ciardo, Stefano Lonardi:
Accurate Decoding of Pooled Sequenced Data Using Compressed Sensing. WABI 2013: 70-84 - 2011
- [j6]Yonghui Wu, Timothy J. Close, Stefano Lonardi:
Accurate Construction of Consensus Genetic Maps via Integer Linear Programming. IEEE ACM Trans. Comput. Biol. Bioinform. 8(2): 381-394 (2011) - [i1]Stefano Lonardi, Denisa Duma, Matthew Alpert, Francesca Cordero, Marco Beccuti, Prasanna Bhat, Yonghui Wu, Gianfranco Ciardo, Burair Alsaihati, Yaqin Ma, Steve Wanamaker, Josh Resnik, Timothy J. Close:
Barcoding-free BAC Pooling Enables Combinatorial Selective Sequencing of the Barley Gene Space. CoRR abs/1112.4438 (2011)
2000 – 2009
- 2009
- [j5]Serdar Bozdag, Timothy J. Close, Stefano Lonardi:
A compartmentalized approach to the assembly of physical maps. BMC Bioinform. 10 (2009) - 2008
- [j4]Yonghui Wu, Lan Liu, Timothy J. Close, Stefano Lonardi:
Deconvoluting BAC-Gene Relationships Using a Physical Map. J. Bioinform. Comput. Biol. 6(3): 603-622 (2008) - [c4]Serdar Bozdag, Timothy J. Close, Stefano Lonardi:
Computing the Minimal Tiling Path from a Physical Map by Integer Linear Programming. WABI 2008: 148-161 - 2007
- [c3]Serdar Bozdag, Timothy J. Close, Stefano Lonardi:
A Compartmentalized Approach to the Assembly of Physical Maps. BIBE 2007: 218-225 - [c2]Yonghui Wu, Prasanna Bhat, Timothy J. Close, Stefano Lonardi:
Efficient and Accurate Construction of Genetic Linkage Maps from Noisy and Missing Genotyping Data. WABI 2007: 395-406 - 2006
- [j3]Jie Zheng, Jan T. Svensson, Kavitha Madishetty, Timothy J. Close, Tao Jiang, Stefano Lonardi:
OligoSpawn: a software tool for the design of overgo probes from large unigene datasets. BMC Bioinform. 7: 7 (2006) - 2005
- [j2]Xinping Cui, Jin Xu, Rehana Asghar, Pascal Condamine, Jan T. Svensson, Steve Wanamaker, Nils Stein, Mikeal Roose, Timothy J. Close:
Detecting single-feature polymorphisms using oligonucleotide arrays and robustified projection pursuit. Bioinform. 21(20): 3852-3858 (2005) - 2004
- [j1]Jie Zheng, Timothy J. Close, Tao Jiang, Stefano Lonardi:
Efficient selection of unique and popular oligos for large EST databases. Bioinform. 20(13): 2101-2112 (2004) - 2003
- [c1]Jie Zheng, Timothy J. Close, Tao Jiang, Stefano Lonardi:
Efficient Selection of Unique and Popular Oligos for Large EST Databases. CPM 2003: 384-401
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