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Journal Articles
- 2024
[j2]Guglielmo Faggioli, Laura Menotti
, Stefano Marchesin, Adriano Chiò, Arianna Dagliati, Mamede de Carvalho, Marta Gromicho, Umberto Manera, Eleonora Tavazzi, Giorgio Maria Di Nunzio, Gianmaria Silvello, Nicola Ferro:
An extensible and unifying approach to retrospective clinical data modeling: the BrainTeaser Ontology. J. Biomed. Semant. 15(1): 16 (2024)- 2023
- [j1]Stefano Marchesin, Laura Menotti, Fabio Giachelle, Gianmaria Silvello, Omar Alonso:
Building a large gene expression-cancer knowledge base with limited human annotations. Database J. Biol. Databases Curation 2023 (2023)
Conference and Workshop Papers
- 2025
- [c12]Anastasios Nentidis, Georgios Katsimpras, Anastasia Krithara, Martin Krallinger, Miguel Rodríguez-Ortega, Natalia V. Loukachevitch, Andrey Sakhovskiy, Elena Tutubalina, Grigorios Tsoumakas, George Giannakoulas, Alexandra Bekiaridou, Athanasios Samaras, Giorgio Maria Di Nunzio, Nicola Ferro, Stefano Marchesin, Laura Menotti, Gianmaria Silvello, Georgios Paliouras:
BioASQ at CLEF2025: The Thirteenth Edition of the Large-Scale Biomedical Semantic Indexing and Question Answering Challenge. ECIR (5) 2025: 407-415 - [c11]Fabio Giachelle, Stefano Marchesin, Laura Menotti, Gianmaria Silvello:
Extending Nanopublications with Knowledge Provenance for Multi-Source Scientific Assertions. IRCDL 2025 - 2024
- [c10]Giovanni Birolo, Pietro Bosoni, Guglielmo Faggioli, Helena Aidos, Roberto Bergamaschi, Paola Cavalla, Adriano Chiò, Arianna Dagliati, Mamede de Carvalho, Giorgio Maria Di Nunzio, Piero Fariselli, Jose Manuel García Dominguez, Marta Gromicho, Alessandro Guazzo, Enrico Longato, Sara C. Madeira, Umberto Manera, Stefano Marchesin, Laura Menotti, Gianmaria Silvello, Eleonora Tavazzi, Erica Tavazzi, Isotta Trescato, Martina Vettoretti, Barbara Di Camillo, Nicola Ferro:
Intelligent Disease Progression Prediction: Overview of iDPP@CLEF 2024. CLEF (2) 2024: 118-139 - [c9]Giovanni Birolo, Pietro Bosoni, Guglielmo Faggioli, Helena Aidos, Roberto Bergamaschi, Paola Cavalla, Adriano Chiò, Arianna Dagliati, Mamede de Carvalho, Giorgio Maria Di Nunzio, Piero Fariselli, Jose Manuel García Dominguez, Marta Gromicho, Alessandro Guazzo, Enrico Longato, Sara C. Madeira, Umberto Manera, Stefano Marchesin, Laura Menotti, Gianmaria Silvello, Eleonora Tavazzi, Erica Tavazzi, Isotta Trescato, Martina Vettoretti, Barbara Di Camillo, Nicola Ferro:
Overview of iDPP@CLEF 2024: The Intelligent Disease Progression Prediction Challenge. CLEF (Working Notes) 2024: 1312-1331 - [c8]Laura Menotti, Manuel Barusco, Riccardo Forzan, Gianmaria Silvello:
Content-Based Dataset Retrieval Methods: Reproducibility of the ACORDAR Test Collection. TPDL (1) 2024: 310-325 - [c7]Fabio Giachelle, Stefano Marchesin, Laura Menotti, Gianmaria Silvello:
Publishing CoreKB Facts as Nanopublications. IRCDL 2024: 16-24 - [c6]Stefano Marchesin, Laura Menotti, Fabio Giachelle, Gianmaria Silvello, Omar Alonso:
Bootstrapping Gene Expression-Cancer Knowledge Bases with Limited Human Annotations. SEBD 2024: 163-173 - [c5]Reham Alharbi, Umair Ahmed, Daniil Dobriy, Weronika Lajewska, Laura Menotti, Mohammad Javad Saeedizade, Michel Dumontier:
Exploring the role of generative AI in constructing knowledge graphs for drug indications with medical context. SWAT4HCLS 2024: 1-10 - 2023
- [c4]Guglielmo Faggioli, Alessandro Guazzo, Stefano Marchesin, Laura Menotti, Isotta Trescato, Helena Aidos, Roberto Bergamaschi, Giovanni Birolo, Paola Cavalla, Adriano Chiò, Arianna Dagliati, Mamede de Carvalho, Giorgio Maria Di Nunzio, Piero Fariselli, Jose Manuel García Dominguez, Marta Gromicho, Enrico Longato, Sara C. Madeira, Umberto Manera, Gianmaria Silvello, Eleonora Tavazzi, Erica Tavazzi, Martina Vettoretti, Barbara Di Camillo, Nicola Ferro:
Intelligent Disease Progression Prediction: Overview of iDPP@CLEF 2023. CLEF 2023: 343-369 - [c3]Guglielmo Faggioli, Alessandro Guazzo, Stefano Marchesin, Laura Menotti, Isotta Trescato, Helena Aidos, Roberto Bergamaschi, Giovanni Birolo, Paola Cavalla, Adriano Chiò, Arianna Dagliati, Mamede de Carvalho, Giorgio Maria Di Nunzio, Piero Fariselli, Jose Manuel García Dominguez, Marta Gromicho, Enrico Longato, Sara C. Madeira, Umberto Manera, Gianmaria Silvello, Eleonora Tavazzi, Erica Tavazzi, Martina Vettoretti, Barbara Di Camillo, Nicola Ferro:
Overview of iDPP@CLEF 2023: The Intelligent Disease Progression Prediction Challenge. CLEF (Working Notes) 2023: 1123-1164 - [c2]Laura Menotti:
Reproducibility and Generalization of a Relation Extraction System for Gene-Disease Associations. itaDATA 2023 - [c1]Laura Menotti, Stefano Marchesin, Gianmaria Silvello:
An Ontology-Driven Knowledge Extraction Tool for Pathology Record Classification. SEBD 2023: 228-238
Data and Artifacts
- 2025
- [d9]Guglielmo Faggioli, Stefano Marchesin, Laura Menotti, Helena Aidos, Roberto Bergamaschi, Giovanni Birolo, Pietro Bosoni, Paola Cavalla, Adriano Chiò, Arianna Dagliati, Mamede de Carvalho, Giorgio Maria Di Nunzio, Piero Fariselli, Jose Manuel García Dominguez, Marta Gromicho, Alessandro Guazzo, Enrico Longato, Sara C. Madeira, Umberto Manera, Gianmaria Silvello, Eleonora Tavazzi, Erica Tavazzi, Isotta Trescato, Martina Vettoretti, Barbara Di Camillo, Nicola Ferro:
BRAINTEASER ALS and MS Datasets. Version 4. Zenodo, 2025 [all versions]
- 2024
- [d8]Giovanni Birolo, Pietro Bosoni, Guglielmo Faggioli, Helena Aidos, Roberto Bergamaschi, Paola Cavalla, Adriano Chiò, Arianna Dagliati, Mamede de Carvalho, Giorgio Maria Di Nunzio, Piero Fariselli, Jose Manuel García Dominguez, Marta Gromicho, Alessandro Guazzo, Enrico Longato, Sara C. Madeira, Umberto Manera, Stefano Marchesin, Laura Menotti, Gianmaria Silvello, Eleonora Tavazzi, Erica Tavazzi, Isotta Trescato, Martina Vettoretti, Barbara Di Camillo, Nicola Ferro:
iDPP@CLEF 2024 - Participants' repositories for the Intelligent Disease Prediction Progression Challenge. Zenodo, 2024 - [d7]Guglielmo Faggioli, Stefano Marchesin, Laura Menotti, Helena Aidos, Roberto Bergamaschi, Giovanni Birolo, Pietro Bosoni, Paola Cavalla, Adriano Chiò, Arianna Dagliati, Mamede de Carvalho, Giorgio Maria Di Nunzio, Piero Fariselli, Jose Manuel García Dominguez, Marta Gromicho, Alessandro Guazzo, Enrico Longato, Sara C. Madeira, Umberto Manera, Gianmaria Silvello, Eleonora Tavazzi, Erica Tavazzi, Isotta Trescato, Martina Vettoretti, Barbara Di Camillo, Nicola Ferro:
BRAINTEASER ALS and MS Datasets. Version 3. Zenodo, 2024 [all versions] - 2023
- [d6]Guglielmo Faggioli, Alessandro Guazzo, Stefano Marchesin, Laura Menotti, Isotta Trescato, Helena Aidos, Roberto Bergamaschi, Giovanni Birolo, Paola Cavalla, Adriano Chiò, Arianna Dagliati, Mamede de Carvalho, Giorgio Maria Di Nunzio, Piero Fariselli, Jose Manuel García Dominguez, Marta Gromicho, Enrico Longato, Sara C. Madeira, Umberto Manera, Gianmaria Silvello, Eleonora Tavazzi, Erica Tavazzi, Martina Vettoretti, Barbara Di Camillo, Nicola Ferro:
iDPP@CLEF 2023 - Participants' repositories for the Intelligent Disease Prediction Progression Challenge. Zenodo, 2023 - [d5]Fabio Giachelle, Stefano Marchesin, Laura Menotti, Gianmaria Silvello:
CORE Nanopublications. Version 1.0. Zenodo, 2023 [all versions] - [d4]Stefano Marchesin, Laura Menotti, Gianmaria Silvello:
The ExaMode Ontology (full version, v.2). Version 2.0. Zenodo, 2023 [all versions] - [d3]Guglielmo Faggioli, Alessandro Guazzo, Stefano Marchesin, Laura Menotti, Isotta Trescato, Helena Aidos, Roberto Bergamaschi, Giovanni Birolo, Paola Cavalla, Adriano Chiò, Arianna Dagliati, Mamede de Carvalho, Giorgio Maria Di Nunzio, Piero Fariselli, Jose Manuel García Dominguez, Marta Gromicho, Enrico Longato, Sara C. Madeira, Umberto Manera, Gianmaria Silvello, Eleonora Tavazzi, Erica Tavazzi, Marta Vettoretti, Barbara Di Camillo, Nicola Ferro:
BRAINTEASER ALS and MS Datasets. Version 1.00. Zenodo, 2023 [all versions] - [d2]Fabio Giachelle, Stefano Marchesin, Laura Menotti, Gianmaria Silvello:
CORE Extended Nanopublications. Version 2.0. Zenodo, 2023 [all versions] - [d1]Fabio Giachelle, Stefano Marchesin, Laura Menotti, Gianmaria Silvello:
CoreKB Facts Serialized as Nanopublications. Zenodo, 2023
Informal and Other Publications
- 2025
- [i2]Raia Abu Ahmad, Reham Alharbi, Roberto Barile, Martin Böckling, Francisco Bolanos, Sara Bonfitto, Oleksandra Bruns, Irene Celino, Yashrajsinh Chudasama, Martin Critelli, Claudia d'Amato, Giada D'Ippolito, Ioannis Dasoulas, Stefano De Giorgis, Vincenzo De Leo, Chiara Di Bonaventura, Marco Di Panfilo, Daniil Dobriy, John Domingue, Xuemin Duan, Michel Dumontier, Sefika Efeoglu, Ruben Eschauzier, Fakih Ginwa, Nicolas Ferranti, Arianna Graciotti, Philipp Hanisch, George Hannah, Golsa Heidari, Aidan Hogan, Hassan Hussein, Alexane Jouglar, Jan-Christoph Kalo, Manoé Kieffer, Antonis Klironomos, Inês Koch, Weronika Lajewska, Nicolas Lazzari, Mikael Lindekrans, Anna Sofia Lippolis, Majlinda Llugiqi, Eleonora Mancini, Eleonora Marzi, Laura Menotti, Daniela F. Milon-Flores, Soulakshmee D. Nagowah, Kerstin Neubert, Emetis Niazmand, Ebrahim Norouzi, Beatriz Olarte Martinez, Anouk Michelle Oudshoorn, Andrea Poltronieri, Valentina Presutti, Disha Purohit, Ensiyeh Raoufi, Célian Ringwald, Johanna Rockstroh, Sebastian Rudolph, Harald Sack, Zafar Saeed, Mohammad Javad Saeedizade, Aya Sahbi, Cristian Santini, Aleksandra Simic, Dennis Sommer, Rita Torres Sousa, Mary Ann Tan, Vidyashree Tarikere, Tabea Tietz, Liam Tirpitz, Arnaldo Tomasino, Frank van Harmelen, Joao Vissoci, Caitlin Woods, Bohui Zhang, Xinyue Zhang, Heng Zheng:
Semantic Web and Creative AI - A Technical Report from ISWS 2023. CoRR abs/2501.18542 (2025) - 2022
- [i1]Laura Menotti:
Building a Relation Extraction Baseline for Gene-Disease Associations: A Reproducibility Study. CoRR abs/2207.06226 (2022)
Coauthor Index
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