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2020 – today
- 2024
[j46]William D. Duncan, Matthew Diller, Damion M. Dooley, William R. Hogan, John Beverley
:
Concretizing plan specifications as realizables within the OBO foundry. J. Biomed. Semant. 15(1): 15 (2024)- [j45]Aokun Chen, Yunpeng Zhao, Yi Zheng, Hui Hu, Xia Hu, Jennifer N. Fishe, William R. Hogan, Elizabeth A. Shenkman, Yi Guo, Jiang Bian:
Exploring the Relation between Contextual Social Determinants of Health and COVID-19 Occurrence and Hospitalization. Informatics 11: 4 (2024) - [j44]Zehao Yu, Cheng Peng, Xi Yang, Chong Dang, Prakash Adekkanattu, Braja Gopal Patra, Yifan Peng, Jyotishman Pathak, Debbie L. Wilson, Ching-Yuan Chang, Wei-Hsuan Lo-Ciganic, Thomas J. George, William R. Hogan, Yi Guo, Jiang Bian, Yonghui Wu:
Identifying social determinants of health from clinical narratives: A study of performance, documentation ratio, and potential bias. J. Biomed. Informatics 153: 104642 (2024) - [j43]Michael M. Wagner, William R. Hogan, John D. Levander, Matthew Diller:
Towards Machine-FAIR: Representing software and datasets to facilitate reuse and scientific discovery by machines. J. Biomed. Informatics 154: 104647 (2024) - [i11]John Beverley, Robin McGill, Sam Smith, Jie Zheng, Giacomo De Colle, Finn Wilson, Matthew Diller, William D. Duncan, William R. Hogan, Yongqun He:
Credentials in the Occupation Ontology. CoRR abs/2405.00186 (2024) - 2023
- [j42]S. Clint Dowland, Barry Smith, Matthew Diller, Jobst Landgrebe, William R. Hogan:
Ontology of language, with applications to demographic data. Appl. Ontology 18(3): 239-262 (2023) - [j41]Cheng Peng, Xi Yang, Zehao Yu, Jiang Bian, William R. Hogan, Yonghui Wu:
Clinical concept and relation extraction using prompt-based machine reading comprehension. J. Am. Medical Informatics Assoc. 30(9): 1486-1493 (2023) - [j40]Piaopiao Li, Tianchen Lyu, Khalid Alkhuzam, Eliot Spector, William T. Donahoo, Sarah Bost, Yonghui Wu, William R. Hogan, Mattia Prosperi, Desmond A. Schatz, Mark A Atkinson, Michael J. Haller, Elizabeth A. Shenkman, Yi Guo, Jiang Bian, Hui Shao:
The role of health system penetration rate in estimating the prevalence of type 1 diabetes in children and adolescents using electronic health records. J. Am. Medical Informatics Assoc. 31(1): 165-173 (2023) - [j39]Cheng Peng, Xi Yang, Aokun Chen, Kaleb E. Smith, Nima M. Pournejatian, Anthony B. Costa, Cheryl Martin, Mona G. Flores, Ying Zhang, Tanja Magoc, Gloria P. Lipori, Duane A. Mitchell, Naykky Singh Ospina, Mustafa M. Ahmed, William R. Hogan, Elizabeth A. Shenkman, Yi Guo, Jiang Bian, Yonghui Wu:
A study of generative large language model for medical research and healthcare. npj Digit. Medicine 6 (2023) - [c57]John Beverley, Sam Smith, Matthew Diller, William D. Duncan, Jie Zheng, John W. Judkins, William R. Hogan, Robin McGill, Damion M. Dooley, Yongqun He:
The Occupation Ontology (OccO): Building a Bridge between Global Occupational Standards. JOWO 2023 - [i10]Cheng Peng, Xi Yang, Zehao Yu, Jiang Bian, William R. Hogan, Yonghui Wu:
Clinical Concept and Relation Extraction Using Prompt-based Machine Reading Comprehension. CoRR abs/2303.08262 (2023) - [i9]Cheng Peng, Xi Yang, Aokun Chen, Kaleb E. Smith, Nima M. Pournejatian, Anthony B. Costa, Cheryl Martin, Mona G. Flores, Ying Zhang, Tanja Magoc, Gloria P. Lipori, Duane A. Mitchell, Naykky Singh Ospina, Mustafa M. Ahmed, William R. Hogan, Elizabeth Shenkman, Yi Guo, Jiang Bian, Yonghui Wu:
A Study of Generative Large Language Model for Medical Research and Healthcare. CoRR abs/2305.13523 (2023) - [i8]Michael M. Wagner, William R. Hogan, John D. Levander, Adam Darr, Matt Diller, Max Sibilla, Alexander T. Loiacono, Terence Sperringer Jr., Shawn T. Brown:
Creating a Discipline-specific Commons for Infectious Disease Epidemiology. CoRR abs/2311.06989 (2023) - 2022
- [j38]Nicolas Matentzoglu, Damien Goutte-Gattat, Shawn Zheng Kai Tan, James P. Balhoff, Seth Carbon, Anita R. Caron, William D. Duncan, Joe E. Flack, Melissa A. Haendel, Nomi L. Harris, William R. Hogan, Charles Tapley Hoyt, Rebecca C. Jackson, Hyeongsik Kim, Hüseyin Kir, Martin Larralde, Julie A. McMurry, James A. Overton, Bjoern Peters, Clare Pilgrim, Raymund Stefancsik, Sofia M. C. Robb, Sabrina Toro, Nicole A. Vasilevsky, Ramona L. Walls, Christopher J. Mungall, David Osumi-Sutherland:
Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies. Database J. Biol. Databases Curation 2022(2022) (2022) - [j37]Tyler J. Loftus, Benjamin Shickel, Jeremy A. Balch, Patrick James Tighe, Kenneth L. Abbott, Brian Fazzone, Erik M. Anderson, Jared Rozowsky, Tezcan Ozrazgat-Baslanti, Yuanfang Ren, Scott A. Berceli, William R. Hogan, Philip A. Efron, J. Randall Moorman, Parisa Rashidi, Gilbert R. Upchurch Jr., Azra Bihorac:
Phenotype clustering in health care: A narrative review for clinicians. Frontiers Artif. Intell. 5 (2022) - [j36]Hansi Zhang, Tianchen Lyu, Pengfei Yin, Sarah Bost, Xing He, Yi Guo, Mattia Prosperi, William R. Hogan, Jiang Bian:
A scoping review of semantic integration of health data and information. Int. J. Medical Informatics 165: 104834 (2022) - [j35]William R. Hogan, Elizabeth A. Shenkman, Temple Robinson, Olveen Carasquillo, Patricia S. Robinson, Rebecca Z. Essner, Jiang Bian, Gigi Lipori, Christopher A. Harle, Tanja Magoc, Lizabeth Manini, Tona Mendoza, Sonya White, Alex Loiacono, Jackie Hall, Dave Nelson:
The OneFlorida Data Trust: a centralized, translational research data infrastructure of statewide scope. J. Am. Medical Informatics Assoc. 29(4): 686-693 (2022) - [j34]Xi Yang, Aokun Chen, Nima M. Pournejatian, Hoo Chang Shin, Kaleb E. Smith, Christopher Parisien, Colin Compas, Cheryl Martin, Anthony B. Costa, Mona G. Flores, Ying Zhang, Tanja Magoc, Christopher A. Harle, Gloria P. Lipori, Duane A. Mitchell, William R. Hogan, Elizabeth A. Shenkman, Jiang Bian, Yonghui Wu:
A large language model for electronic health records. npj Digit. Medicine 5 (2022) - [c56]Aokun Chen, Qian Li, Xing He, Michael Jaffee, William R. Hogan, Fei Wang, Yi Guo, Jiang Bian:
Impacts of Eligibility Criteria on Trial Participants' Age in Alzheimer's Disease Clinical Trials. AMIA 2022 - [c55]Matthew Diller, William R. Hogan:
An Ontological Representation of Money with a View Toward Economic Determinants of Health. ICBO 2022: 1-9 - [c54]S. Clint Dowland, William R. Hogan:
Using Ontologies to Enhance Data on Intimate Partner Violence. ICBO 2022: 1-6 - [c53]Zehao Yu, Xi Yang, Yiqing Chen, Ruogu Fang, William R. Hogan, Yan Gong, Yonghui Wu:
Identify Cancer Patients at Risk for Heart Failure using Electronic Health Record and Genetic Data. ICHI 2022: 138-142 - [c52]Nitya Singh, Naomi Braun, William R. Hogan, Mathias Brochhausen:
Integration of Biobanking Architecture with Genomics Data: Genomics Integrated Biobanking Ontology (GIBO). ICIMTH 2022: 302-303 - [i7]Xi Yang, Nima M. Pournejatian, Hoo Chang Shin, Kaleb E. Smith, Christopher Parisien, Colin Compas, Cheryl Martin, Mona G. Flores, Ying Zhang, Tanja Magoc, Christopher A. Harle, Gloria P. Lipori, Duane A. Mitchell, William R. Hogan, Elizabeth A. Shenkman, Jiang Bian, Yonghui Wu:
GatorTron: A Large Clinical Language Model to Unlock Patient Information from Unstructured Electronic Health Records. CoRR abs/2203.03540 (2022) - [i6]Nicolas Matentzoglu, Damien Goutte-Gattat, Shawn Zheng Kai Tan, James P. Balhoff, Seth Carbon, Anita R. Caron, William D. Duncan, Joe E. Flack, Melissa A. Haendel, Nomi L. Harris, William R. Hogan, Charles Tapley Hoyt, Rebecca C. Jackson, Hyeongsik Kim, Hüseyin Kir, Martin Larralde, Julie A. McMurry, James A. Overton, Bjoern Peters, Clare Pilgrim, Raymund Stefancsik, Sofia M. C. Robb, Sabrina Toro, Nicole A. Vasilevsky, Ramona L. Walls, Christopher J. Mungall, David Osumi-Sutherland:
Ontology Development Kit: a toolkit for building, maintaining, and standardising biomedical ontologies. CoRR abs/2207.02056 (2022) - [i5]Zehao Yu, Xi Yang, Chong Dang, Prakash Adekkanattu, Braja Gopal Patra, Yifan Peng, Jyotishman Pathak, Debbie L. Wilson, Ching-Yuan Chang, Wei-Hsuan Lo-Ciganic, Thomas J. George, William R. Hogan, Yi Guo, Jiang Bian, Yonghui Wu:
SODA: A Natural Language Processing Package to Extract Social Determinants of Health for Cancer Studies. CoRR abs/2212.03000 (2022) - 2021
- [j33]Braja Gopal Patra, Mohit M. Sharma, Veer Vekaria, Prakash Adekkanattu, Olga V. Patterson, Benjamin S. Glicksberg, Lauren A. Lepow, Euijung Ryu, Joanna M. Biernacka, Al'ona Furmanchuk, Thomas J. George, William R. Hogan, Yonghui Wu, Xi Yang, Jiang Bian, Myrna Weissman, Priya Wickramaratne, J. John Mann, Mark Olfson, Thomas R. Campion Jr., Mark G. Weiner, Jyotishman Pathak:
Extracting social determinants of health from electronic health records using natural language processing: a systematic review. J. Am. Medical Informatics Assoc. 28(12): 2716-2727 (2021) - [j32]Zhaoyi Chen, Hansi Zhang, Yi Guo, Thomas J. George, Mattia Prosperi, William R. Hogan, Zhe He, Elizabeth A. Shenkman, Fei Wang, Jiang Bian:
Exploring the feasibility of using real-world data from a large clinical data research network to simulate clinical trials of Alzheimer's disease. npj Digit. Medicine 4 (2021) - [c51]Zehao Yu, Xi Yang, Chong Dang, Songzi Wu, Prakash Adekkanattu, Jyotishman Pathak, Thomas J. George, William R. Hogan, Yi Guo, Jiang Bian, Yonghui Wu:
A Study of Social and Behavioral Determinants of Health in Lung Cancer Patients Using Transformers-based Natural Language Processing Models. AMIA 2021 - [c50]Hansi Zhang, Xi Yang, Thomas J. George, William R. Hogan, Jiang Bian, Yonghui Wu:
Developing an Ontology for Social and Behavioral Determinants of Health. AMIA 2021 - [i4]Zhaoyi Chen, Xiong Liu, William R. Hogan, Elizabeth Shenkman, Jiang Bian:
Applications of artificial intelligence in drug development using real-world data. CoRR abs/2101.08904 (2021) - [i3]Zehao Yu, Xi Yang, Chong Dang, Songzi Wu, Prakash Adekkanattu, Jyotishman Pathak, Thomas J. George, William R. Hogan, Yi Guo, Jiang Bian, Yonghui Wu:
A Study of Social and Behavioral Determinants of Health in Lung Cancer Patients Using Transformers-based Natural Language Processing Models. CoRR abs/2108.04949 (2021) - 2020
- [j31]Xinsong Du, Jae Min, Chintan P. Shah, Rohit Bishnoi, William R. Hogan, Dominick J. Lemas:
Predicting in-hospital mortality of patients with febrile neutropenia using machine learning models. Int. J. Medical Informatics 139: 104140 (2020) - [j30]Xi Yang, Jiang Bian, Ruogu Fang, Ragnhildur I. Bjarnadottir, William R. Hogan, Yonghui Wu:
Identifying relations of medications with adverse drug events using recurrent convolutional neural networks and gradient boosting. J. Am. Medical Informatics Assoc. 27(1): 65-72 (2020) - [j29]Xi Yang, Jiang Bian, William R. Hogan, Yonghui Wu:
Clinical concept extraction using transformers. J. Am. Medical Informatics Assoc. 27(12): 1935-1942 (2020) - [j28]Jiang Bian, Tianchen Lyu, Alexander T. Loiacono, Tonatiuh Mendoza Viramontes, Gloria P. Lipori, Yi Guo, Yonghui Wu, Mattia Prosperi, Thomas J. George, Christopher A. Harle, Elizabeth A. Shenkman, William R. Hogan:
Assessing the practice of data quality evaluation in a national clinical data research network through a systematic scoping review in the era of real-world data. J. Am. Medical Informatics Assoc. 27(12): 1999-2010 (2020) - [j27]Matthew Diller, Evan Johnson, Amanda Hicks, William R. Hogan:
A realism-based approach to an ontological representation of symbiotic interactions. BMC Medical Informatics Decis. Mak. 20(1): 258 (2020) - [c49]Yi Guo, Xing He, Tianchen Lyu, Hansi Zhang, Yonghui Wu, Xi Yang, Zhaoyi Chen, Merry J. Markham, François Modave, Mengjun Xie, William R. Hogan, Christopher A. Harle, Elizabeth Shenkman, Jiang Bian:
Developing and Validating a Computable Phenotype for the Identification of Transgender and Gender Nonconforming Individuals and Subgroups. AMIA 2020
2010 – 2019
- 2019
- [j26]Jonathan P. Bona, Mathias Brochhausen, William R. Hogan:
Enhancing the drug ontology with semantically-rich representations of National Drug Codes and RxNorm unique concept identifiers. BMC Bioinform. 20-S(21): 708 (2019) - [j25]Xi Yang, Tianchen Lyu, Qian Li, Chih-Yin Lee, Jiang Bian, William R. Hogan, Yonghui Wu:
A study of deep learning methods for de-identification of clinical notes in cross-institute settings. BMC Medical Informatics Decis. Mak. 19-S(5): 6 (2019) - [c48]Qian Li, Zhe He, Yi Guo, Hansi Zhang, Thomas J. George, William R. Hogan, Neil Charness, Jiang Bian:
Assessing the Validity of a a priori Patient-Trial Generalizability Score using Real-world Data from a Large Clinical Data Research Network: A Colorectal Cancer Clinical Trial Case Study. AMIA 2019 - [c47]Xi Yang, Yan Gong, Nida Waheed, Keith March, Jiang Bian, William R. Hogan, Yonghui Wu:
Identifying Cancer Patients at Risk for Heart Failure Using Machine Learning Methods. AMIA 2019 - [c46]Xi Yang, Tianchen Lyu, Chih-Yin Lee, Jiang Bian, William R. Hogan, Yonghui Wu:
A Study of Deep Learning Methods for De-identification of Clinical Notes at Cross Institute Settings. ICHI 2019: 1-3 - [i2]Xi Yang, Yan Gong, Nida Waheed, Keith March, Jiang Bian, William R. Hogan, Yonghui Wu:
Identifying Cancer Patients at Risk for Heart Failure Using Machine Learning Methods. CoRR abs/1910.00582 (2019) - 2018
- [j24]Juan Antonio Lossio-Ventura, William R. Hogan, François Modave, Yi Guo, Zhe He, Xi Yang, Hansi Zhang, Jiang Bian:
OC-2-KB: integrating crowdsourcing into an obesity and cancer knowledge base curation system. BMC Medical Informatics Decis. Mak. 18(S-2): 115-127 (2018) - [c45]Yonghui Wu, Xi Yang, Jiang Bian, Yi Guo, Hua Xu, William R. Hogan:
Combine Factual Medical Knowledge and Distributed Word Representation to Improve Clinical Named Entity Recognition. AMIA 2018 - [c44]Hansi Zhang, Zhe He, Xing He, Yi Guo, David R. Nelson, François Modave, Yonghui Wu, William R. Hogan, Mattia Prosperi, Jiang Bian:
Computable Eligibility Criteria through Ontology-driven Data Access: A Case Study of Hepatitis C Virus Trials. AMIA 2018 - [c43]Amanda Hicks, William R. Hogan, Carl Pepine, Nathan Boire, Chloe Herring, Selja Seppälä:
Introducing Hypertension FACT: Vital Sign Ontology Annotations in the Florida Annotated Corpus for Translational Science. FLAIRS 2018: 493-499 - 2017
- [j23]Adam Culbertson, Satyender Goel, Margaret B. Madden, Niloufar Safaeinili, Kathryn L. Jackson, Thomas Carton, Russ Waitman, Mei Liu, Ashok Krishnamurthy, Lauren Hall, Nickie Cappella, Shyam Visweswaran, Michael J. Becich, Reuben J. Applegate, Elmer V. Bernstam, Russell Rothman, Michael E. Matheny, Gloria P. Lipori, Jiang Bian, William R. Hogan, Douglas S. Bell, Andrew Martin, Shaun J. Grannis, Jeffrey G. Klann, Rebecca Sutphen, Amy O'hara, Abel N. Kho:
The Building Blocks of Inter-operability. Appl. Clin. Inform. 08(02): 322-336 (2017) - [j22]William R. Hogan, Josh Hanna, Amanda Hicks, Samira Amirova, Baxter Bramblett, Matthew Diller, Rodel Enderez, Timothy Modzelewski, Mirela Vasconcelos, Chris Delcher:
Therapeutic indications and other use-case-driven updates in the drug ontology: anti-malarials, anti-hypertensives, opioid analgesics, and a large term request. J. Biomed. Semant. 8(1): 10:1-10:11 (2017) - [j21]Jiawei Yuan, Bradley A. Malin, François Modave, Yi Guo, William R. Hogan, Elizabeth Shenkman, Jiang Bian:
Towards a privacy preserving cohort discovery framework for clinical research networks. J. Biomed. Informatics 66: 42-51 (2017) - [c42]Zhe He, Arturo Gonzalez-Izquierdo, Spiros C. Denaxas, Andrei Sura, Yi Guo, William R. Hogan, Elizabeth Shenkman, Jiang Bian:
Comparing and Contrasting A Priori and A Posteriori Generalizability Assessment of Clinical Trials on Type 2 Diabetes Mellitus. AMIA 2017 - [c41]Jiang Bian, Andrei Sura, Gloria P. Lipori, Yi Guo, François Modave, Zhe He, Elizabeth Shenkman, William R. Hogan:
Implementing a Hash-based Privacy-Preserving Entity Resolution Tool in the OneFlorida Clinical Data Research Network. AMIA 2017 - [c40]Juan Antonio Lossio-Ventura, William R. Hogan, François Modave, Amanda Hicks, Yi Guo, Zhe He, Mirela Vasconcelos, Jiang Bian:
Building an Obesity and Cancer Semantic Web Knowledge Base. AMIA 2017 - [c39]Juan Antonio Lossio-Ventura, William R. Hogan, François Modave, Yi Guo, Zhe He, Amanda Hicks, Jiang Bian:
OC-2-KB: A software pipeline to build an evidence-based obesity and cancer knowledge base. BIBM 2017: 1284-1287 - [c38]Dharani K. Balasubramanian, Jamillah Z. Khan, Jiang Bian, Yi Guo, William R. Hogan, Amanda Hicks:
Ontology of Cancer Related Social-Ecological Variables. ICBO 2017 - [c37]Amanda Hicks, William R. Hogan:
That Which we Call a Pediatrician Would by Any Other Name a Child Treat (or not). ICBO 2017 - 2016
- [j20]Josh Hanna, Jiang Bian, William R. Hogan:
An accurate and precise representation of drug ingredients. J. Biomed. Semant. 7: 7 (2016) - [j19]Amanda Hicks, Josh Hanna, Daniel Welch, Mathias Brochhausen, William R. Hogan:
The ontology of medically related social entities: recent developments. J. Biomed. Semant. 7: 47 (2016) - [j18]William R. Hogan, Michael M. Wagner, Mathias Brochhausen, John D. Levander, Shawn T. Brown, Nicholas Millett, Jay DePasse, Josh Hanna:
The Apollo Structured Vocabulary: an OWL2 ontology of phenomena in infectious disease epidemiology and population biology for use in epidemic simulation. J. Biomed. Semant. 7: 50 (2016) - [j17]William R. Hogan, Werner Ceusters:
Diagnosis, misdiagnosis, lucky guess, hearsay, and more: an ontological analysis. J. Biomed. Semant. 7: 54 (2016) - [c36]Zhe He, Neil Charness, Jiang Bian, William R. Hogan:
Assessing the comorbidity gap between clinical studies and prevalence in elderly patient populations. BHI 2016: 136-139 - [c35]Juan Antonio Lossio-Ventura, William R. Hogan, François Modave, Amanda Hicks, Josh Hanna, Yi Guo, Zhe He, Jiang Bian:
Towards an obesity-cancer knowledge base: Biomedical entity identification and relation detection. BIBM 2016: 1081-1088 - [c34]Cilia E. Zayas, Zhe He, Jiawei Yuan, Mildred Maldonado-Molina, William R. Hogan, François Modave, Yi Guo, Jiang Bian:
Examining Healthcare Utilization Patterns of Elderly and Middle-Aged Adults in the United States. FLAIRS 2016: 361-367 - [c33]Daniel Welch, Amanda Hicks, Josh Hanna, William R. Hogan:
A Semantic Web Representation of Entire Populations. ICBO/BioCreative 2016 - [c32]Mathias Brochhausen, Philip E. Empey, Jodi Schneider, William R. Hogan, Richard D. Boyce:
Adding Evidence Type Representation to DIDEO. ICBO/BioCreative 2016 - 2015
- [c31]Amanda Hicks, William R. Hogan, Michael W. Rutherford, Bradley A. Malin, Mengjun Xie, Christiane Fellbaum, Zhijun Yin, Daniel Fabbri, Josh Hanna, Jiang Bian:
Mining Twitter as a First Step toward Assessing the Adequacy of Gender Identification Terms on Intake Forms. AMIA 2015 - [c30]Werner Ceusters, William R. Hogan:
An ontological analysis of diagnostic assertions in electronic healthcare records. ICBO 2015 - [c29]Jodi Schneider, Mathias Brochhausen, Samuel Rosko, Paolo Ciccarese, William R. Hogan, Daniel C. Malone, Yifan Ning, Tim Clark, Richard D. Boyce:
Formalizing Knowledge and Evidence about Potential Drug-drug Interactions. BDM2I@ISWC 2015 - [e1]William R. Hogan, Sivaram Arabandi, Mathias Brochhausen:
Proceedings of the 5th International Conference on Biomedical Ontology, ICBO 2014, Houston, Texas, USA, October 8-9, 2014. CEUR Workshop Proceedings 1327, CEUR-WS.org 2015 [contents] - 2014
- [j16]Jiang Bian, Mengjun Xie, Umit Topaloglu, Teresa Hudson, Hari Eswaran, William R. Hogan:
Social network analysis of biomedical research collaboration networks in a CTSA institution. J. Biomed. Informatics 52: 130-140 (2014) - [c28]Mathias Brochhausen, William R. Hogan, John D. Levander, Shawn T. Brown, Nicholas Millett, Josh Hanna, Michael M. Wagner:
A Novel Representation of Terms Related to Infectious Disease Epidemiology for Epidemic Modeling: The Apollo Structured Vocabulary and Pre-existing Representations. ICBO 2014: 21-26 - 2013
- [j15]Mathias Brochhausen, Martin N. Fransson, Nitin Kanaskar, Mikael Eriksson, Roxana Merino-Martinez, Roger A. Hall, Loreana Norlin, Sanela Kjellqvist, Maria Hortlund, Umit Topaloglu, William R. Hogan, Jan-Eric Litton:
Developing a semantically rich ontology for the biobank-administration domain. J. Biomed. Semant. 4: 23 (2013) - [j14]Josh Hanna, Eric Joseph, Mathias Brochhausen, William R. Hogan:
Building a drug ontology based on RxNorm and other sources. J. Biomed. Semant. 4: 44 (2013) - [j13]Radhakrishnan Nagarajan, Alex T. Kalinka, William R. Hogan:
Evidence of community structure in Biomedical Research Grant Collaborations. J. Biomed. Informatics 46(1): 40-46 (2013) - [c27]Michael M. Wagner, John D. Levander, Shawn T. Brown, William R. Hogan, Nicholas Millett, Josh Hanna:
Apollo: Giving application developers a single point of access to public health models using structured vocabularies and Web services. AMIA 2013 - [c26]Jiang Bian, Mengjun Xie, Umit Topaloglu, Teresa Hudson, William R. Hogan:
Understanding biomedicai research collaborations through social network analysis: A case study. BIBM 2013: 9-16 - [c25]Cheng Chen, Josh Hanna, John R. Talburt, Mathias Brochhausen, William R. Hogan:
A Demonstration of Entity Identity Information Management Applied to Demographic Data in a Referent Tracking System. ICBO 2013: 136-137 - [c24]Roger A. Hall, Josh Hanna, William R. Hogan:
Maintaining the Drug Ontology: an Open-source, Structured Product Label API for the JVM. VDOS+DO@ICBO 2013 - [c23]Josh Hanna, Eric Joseph, Mathias Brochhausen, William R. Hogan:
Building a Drug Ontology based on RxNorm and Other Sources. VDOS+DO@ICBO 2013 - [c22]William R. Hogan, Josh Hanna, Eric Joseph, Mathias Brochhausen:
Towards a Consistent and Scientifically Accurate Drug Ontology. ICBO 2013: 68-73 - [c21]Laura Slaughter, Mathias Brochhausen, William R. Hogan, Øystein Nytrø:
The Core Clinical Protocol Ontology (C2PO): A Realist Ontology for Representing the Recommendations within Clinical Guidelines. MedInfo 2013: 997 - 2012
- [c20]Josh Hanna, Chen Cheng, Alex Crow, Roger A. Hall, Jie Liu, Tejaswini Pendurthi, Trent Schmidt, Steven F. Jennings, Mathias Brochhausen, William R. Hogan:
Simplifying MIREOT; a MIREOT Protege Plugin. ISWC (Posters & Demos) 2012 - [i1]Gregory F. Cooper, Denver Dash, John D. Levander, Weng-Keen Wong, William R. Hogan, Michael M. Wagner:
Bayesian Biosurveillance of Disease Outbreaks. CoRR abs/1207.4122 (2012) - 2011
- [j12]William R. Hogan:
Towards an ontological theory of substance intolerance and hypersensitivity. J. Biomed. Informatics 44(1): 26-34 (2011) - [j11]Kaihong Liu, William R. Hogan, Rebecca S. Crowley:
Natural Language Processing methods and systems for biomedical ontology learning. J. Biomed. Informatics 44(1): 163-179 (2011) - [c19]William R. Hogan, Swetha Garimalla, Shariq A. Tariq:
Representing the Reality Underlying Demographic Data. ICBO 2011 - [c18]William R. Hogan, Swetha Garimalla, Shariq A. Tariq, Werner Ceusters:
Representing Local Identifiers in a Referent-Tracking System. ICBO 2011
2000 – 2009
- 2009
- [j10]Jonathan L. Lustgarten, Shyam Visweswaran, Robert P. Bowser, William R. Hogan, Vanathi Gopalakrishnan:
Knowledge-based variable selection for learning rules from proteomic data. BMC Bioinform. 10(S-9): 16 (2009) - [j9]Aurel Cami, Garrick L. Wallstrom, William R. Hogan:
Measuring the effect of commuting on the performance of the Bayesian Aerosol Release Detector. BMC Medical Informatics Decis. Mak. 9(S-1): S7 (2009) - [j8]Aurel Cami, Garrick L. Wallstrom, Ashley L. Fowlkes, Cathy A. Panozzo, William R. Hogan:
Mining aggregates of over-the-counter products for syndromic surveillance. Pattern Recognit. Lett. 30(3): 255-266 (2009) - 2008
- [j7]Jonathan L. Lustgarten, Chad Kimmel, Henrik Ryberg, William R. Hogan:
EPO-KB: a searchable knowledge base of biomarker to protein links. Bioinform. 24(11): 1418-1419 (2008) - [c17]Aurel Cami, Garrick L. Wallstrom, William R. Hogan:
Integrating a Commuting Model with the Bayesian Aerosol Release Detector. BioSecure 2008: 85-96 - [c16]Xiaohui Kong, Garrick L. Wallstrom, William R. Hogan:
A Temporal Extension of the Bayesian Aerosol Release Detector. BioSecure 2008: 97-107 - 2007
- [j6]Garrick L. Wallstrom, William R. Hogan:
Unsupervised clustering of over-the-counter healthcare products into product categories. J. Biomed. Informatics 40(6): 642-648 (2007) - 2005
- [j5]David L. Buckeridge, Howard S. Burkom, Murray Campbell, William R. Hogan, Andrew W. Moore:
Algorithms for rapid outbreak detection: a research synthesis. J. Biomed. Informatics 38(2): 99-113 (2005) - [c15]William R. Hogan, Garrick L. Wallstrom, Michael M. Wagner:
An Evaluation of Three Policies for Updating Product Categories in the National Retail Data Monitor. AMIA 2005 - [c14]Ran Li, Garrick L. Wallstrom, William R. Hogan:
A Multivariate Procedure for Identifying Correlations between Diagnoses and Over-the-counter Products from Historical Datasets. AMIA 2005 - 2004
- [c13]Heather A. Johnson, Michael M. Wagner, William R. Hogan, Wendy W. Chapman, Robert T. Olszewski, John N. Dowling, Gary Barnas:
Analysis of Web Access Logs for Surveillance of Influenza. MedInfo 2004: 1202-1206 - [c12]Gregory F. Cooper, Denver Dash, John D. Levander, Weng-Keen Wong, William R. Hogan, Michael M. Wagner:
Bayesian Biosurveillance of Disease Outbreaks. UAI 2004: 94-103 - 2003
- [j4]Michael M. Wagner, J. Michael Robinson, Fu-Chiang Tsui, Jeremy U. Espino, William R. Hogan:
Application of Information Technology: Design of a National Retail Data Monitor for Public Health Surveillance. J. Am. Medical Informatics Assoc. 10(5): 409-418 (2003) - [j3]William R. Hogan, Fu-Chiang Tsui, Oleg Ivanov, Per H. Gesteland, Shaun J. Grannis, J. Marc Overhage, J. Michael Robinson, Michael M. Wagner:
Research Paper: Detection of Pediatric Respiratory and Diarrheal Outbreaks from Sales of Over-the-counter Electrolyte Products. J. Am. Medical Informatics Assoc. 10(6): 555-562 (2003) - [c11]Jeremy U. Espino, William R. Hogan, Michael M. Wagner:
Telephone Triage: A Timely Data Source for Surveillance of Influenza-like Diseases. AMIA 2003 - [c10]Oleg Ivanov, Per H. Gesteland, William R. Hogan, Michael B. Mundorff, Michael M. Wagner:
Detection of Pediatric Respiratory and Gastrointestinal Outbreaks from Free-Text Chief Complaints. AMIA 2003 - [c9]Lili Ma, Fu-Chiang Tsui, William R. Hogan, Michael M. Wagner, Haobo Ma:
A Framework for Infection Control Surveillance Using Association Rules. AMIA 2003 - [c8]Jun Zhang, Fu-Chiang Tsui, Michael M. Wagner, William R. Hogan:
Detection of Outbreaks from Time Series Data Using Wavelet Transform. AMIA 2003 - 2002
- [c7]William R. Hogan, Michael M. Wagner, Fu-Chiang Tsui:
Experience with Message Format and Code Set Standards for Early Warning Public Health Surveillance Systems. AMIA 2002
1990 – 1999
- 1999
- [c6]William R. Hogan, Michael M. Wagner:
The use of an explanation algorithm in a clinical event monitor. AMIA 1999 - [c5]Fu-Chiang Tsui, Michael M. Wagner, Wayne Wilbright, Aaron Tse, William R. Hogan:
A feasibility study of two methods for end-user configuration of a clinical event monitor. AMIA 1999 - 1998
- [c4]Stuart A. Eisenstadt, Michael M. Wagner, William R. Hogan, Marvin C. Pankaskie, Fu-Chiang Tsui, Wayne Wilbright:
Mobile workers in healthcare and their information needs: are 2-way pagers the answer? AMIA 1998 - [c3]William R. Hogan, Michael M. Wagner:
Optimal use of communication channels in clinical event monitoring. AMIA 1998 - [c2]Michael M. Wagner, Stuart A. Eisenstadt, William R. Hogan, Marvin C. Pankaskie:
Preferences of interns and residents for E-mail, paging, or traditional methods for the delivery of different types of clinical information. AMIA 1998 - 1997
- [j2]William R. Hogan, Michael M. Wagner:
Review: Accuracy of Data in Computer-based Patient Records. J. Am. Medical Informatics Assoc. 4(5): 342-355 (1997) - [c1]Michael M. Wagner, Marvin C. Pankaskie, William R. Hogan, Fu-Chiang Tsui, Stuart A. Eisenstadt, Eric Rodriguez, John K. Vries:
Clinical event monitoring at the University of Pittsburgh. AMIA 1997 - 1996
- [j1]Michael M. Wagner, William R. Hogan:
Research Paper: The Accuracy of Medication Data in an Outpatient Electronic Medical Record. J. Am. Medical Informatics Assoc. 3(3): 234-244 (1996)
Coauthor Index
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