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ORCIDJessica Cara Mar
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2020 – today
- 2022
[j10]Ebony Rose Watson
, Ariane Mora, Atefeh Taherian Fard, Jessica Cara Mar:
How does the structure of data impact cell-cell similarity? Evaluating how structural properties influence the performance of proximity metrics in single cell RNA-seq data. Briefings Bioinform. 23(6) (2022)- 2020
- [j9]Laurence de Torrenté, Samuel E. Zimmerman, Masako Suzuki, Maximilian Christopeit, John M. Greally, Jessica Cara Mar:
The shape of gene expression distributions matter: how incorporating distribution shape improves the interpretation of cancer transcriptomic data. BMC Bioinform. 21-S(21): 562 (2020)
2010 – 2019
- 2019
- [j8]Daniel G. Piqué, Grasiella A. Andriani, Elaine Maggi, Samuel E. Zimmerman, John M. Greally, Cristina Montagna, Jessica Cara Mar:
Aneuvis: web-based exploration of numerical chromosomal variation in single cells. BMC Bioinform. 20(1): 336:1-336:10 (2019) - [j7]Benjamin V. Church, Henry T. Williams, Jessica Cara Mar:
Investigating skewness to understand gene expression heterogeneity in large patient cohorts. BMC Bioinform. 20-S(24): 668 (2019) - 2018
- [j6]Shuonan Chen, Jessica Cara Mar:
Evaluating methods of inferring gene regulatory networks highlights their lack of performance for single cell gene expression data. BMC Bioinform. 19(1): 232:1-232:21 (2018) - 2012
- [j5]Thomas W. Chittenden, Eleanor Howe, Jennifer M. Taylor, Jessica Cara Mar, Martin J. Aryee, Harold Gómez, Razvan Sultana, John C. Braisted, Sarita J. Nair, John Quackenbush, Chris Holmes:
nEASE: a method for gene ontology subclassification of high-throughput gene expression data. Bioinform. 28(5): 726-728 (2012) - [j4]Natali Gulbahce, Han Yan, Amélie Dricot, Megha Padi, Danielle Byrdsong, Rachel Franchi, Deok-Sun Lee, Orit Rozenblatt-Rosen, Jessica Cara Mar, Michael A. Calderwood, Amy Baldwin, Bo Zhao, Balaji Santhanam, Pascal Braun, Nicolas Simonis, Kyung-Won Huh, Karin Hellner, Miranda Grace, Alyce Chen, Renee Rubio, Jarrod A. Marto, Nicholas A. Christakis, Elliott Kieff, Frederick P. Roth, Jennifer Roecklein-Canfield, James A. DeCaprio, Michael E. Cusick, John Quackenbush, David E. Hill, Karl Münger, Marc Vidal, Albert-László Barabási:
Viral Perturbations of Host Networks Reflect Disease Etiology. PLoS Comput. Biol. 8(6) (2012) - 2011
- [j3]Jessica Cara Mar, Christine A. Wells, John Quackenbush:
Defining an informativeness metric for clustering gene expression data. Bioinform. 27(8): 1094-1100 (2011)
2000 – 2009
- 2009
- [j2]Jessica Cara Mar, Yasumasa Kimura, Kate Schroder, Katharine M. Irvine, Yoshihide Hayashizaki, Harukazu Suzuki, David A. Hume, John Quackenbush:
Data-driven normalization strategies for high-throughput quantitative RT-PCR. BMC Bioinform. 10 (2009) - [j1]Jessica Cara Mar, John Quackenbush:
Decomposition of Gene Expression State Space Trajectories. PLoS Comput. Biol. 5(12) (2009)
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