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Chongle Pan
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2020 – today
- 2024
- [c6]Paul Calle, Ruosi Shao, Yunlong Liu, Emily T. Hébert, Darla E. Kendzor, Jordan M. Neil, Michael S. Businelle, Chongle Pan:
Towards AI-Driven Healthcare: Systematic Optimization, Linguistic Analysis, and Clinicians' Evaluation of Large Language Models for Smoking Cessation Interventions. CHI 2024: 436:1-436:16 - [c5]Bailu Zhang, Shichao Feng, Manushi Parajuli, Yi Xiong, Chongle Pan, Xuan Guo:
SEMQuant: Extending Sipros-Ensemble with Match-Between-Runs for Comprehensive Quantitative Metaproteomics. ISBRA (3) 2024: 102-115 - 2023
- [j11]Yuning Cui, Yifu Li, Chongle Pan, Stephanie R. Brown, Rachel E. Gallant, Rui Zhu:
Bayesian inference for survival prediction of childhood Leukemia. Comput. Biol. Medicine 156: 106713 (2023) - [j10]Adrien Badré, Chongle Pan:
Explainable multi-task learning improves the parallel estimation of polygenic risk scores for many diseases through shared genetic basis. PLoS Comput. Biol. 19(7) (2023) - [i1]Adrien Badré, Li Zhang, Wellington Muchero, Justin C. Reynolds, Chongle Pan:
Deep neural network improves the estimation of polygenic risk scores for breast cancer. CoRR abs/2307.13010 (2023) - 2022
- [j9]Adrien Badré, Chongle Pan:
LINA: A Linearizing Neural Network Architecture for Accurate First-Order and Second-Order Interpretations. IEEE Access 10: 36166-36176 (2022) - [j8]Shichao Feng, Hong-Long Ji, Huan Wang, Bailu Zhang, Ryan Sterzenbach, Chongle Pan, Xuan Guo:
MetaLP: An integrative linear programming method for protein inference in metaproteomics. PLoS Comput. Biol. 18(10): 1010603 (2022) - [c4]Jiancheng Li, Chongle Pan, Xuan Guo:
IDIA: An Integrative Signal Extractor for Data-Independent Acquisition Proteomics. BIBM 2022: 266-269 - [c3]Shengze Wang, Shichao Feng, Chongle Pan, Xuan Guo:
FineFDR: Fine-grained Taxonomy-specific False Discovery Rates Control in Metaproteomics. BIBM 2022: 287-292
2010 – 2019
- 2018
- [j7]Xuan Guo, Zhou Li, Qiuming Yao, Ryan S. Mueller, Jimmy K. Eng, David L. Tabb, IV William Judson Hervey, Chongle Pan:
Sipros Ensemble improves database searching and filtering for complex metaproteomics. Bioinform. 34(5): 795-802 (2018) - [c2]Alexander J. Paul, Dylan Lawrence, Myoungkyu Song, Seung-Hwan Lim, Chongle Pan, Tae-Hyuk Ahn:
SORA: Scalable Overlap-graph Reduction Algorithms for Genome Assembly using Apache Spark in the Cloud. BIBM 2018: 718-723 - 2015
- [j6]Tae-Hyuk Ahn, Juanjuan Chai, Chongle Pan:
Sigma: Strain-level inference of genomes from metagenomic analysis for biosurveillance. Bioinform. 31(2): 170-177 (2015) - 2014
- [j5]Bahlul Haider, Tae-Hyuk Ahn, Brian Bushnell, Juanjuan Chai, Alex Copeland, Chongle Pan:
Omega: an Overlap-graph de novo Assembler for Metagenomics. Bioinform. 30(19): 2717-2722 (2014) - 2013
- [j4]Yingfeng Wang, Tae-Hyuk Ahn, Zhou Li, Chongle Pan:
Sipros/ProRata: a versatile informatics system for quantitative community proteomics. Bioinform. 29(16): 2064-2065 (2013) - 2012
- [j3]Doug Hyatt, Chongle Pan:
Exhaustive database searching for amino acid mutations in proteomes. Bioinform. 28(14): 1895-1901 (2012) - 2010
- [j2]Chongle Pan, Byung-Hoon Park, William H. McDonald, Patricia A. Carey, Jillian F. Banfield, Nathan Verberkmoes, Robert L. Hettich, Nagiza F. Samatova:
A high-throughput de novo sequencing approach for shotgun proteomics using high-resolution tandem mass spectrometry. BMC Bioinform. 11: 118 (2010)
2000 – 2009
- 2009
- [p1]Chandrika Kamath, Nikil Wale, George Karypis, Gaurav Pandey, Vipin Kumar, Krishna Rajan, Nagiza F. Samatova, Paul Breimyer, Guruprasad Kora, Chongle Pan, Srikanth B. Yoginath:
Scientific Data Analysis. Scientific Data Management 2009 - 2005
- [j1]Bo Yan, Chongle Pan, Victor Olman, Robert L. Hettich, Ying Xu:
A graph-theoretic approach for the separation of b and y ions in tandem mass spectra. Bioinform. 21(5): 563-574 (2005) - 2004
- [c1]Bo Yan, Chongle Pan, Victor Olman, Robert L. Hettich, Ying Xu:
Separation of Ion Types in Tandem Mass Spectrometry Data Interpretation - A Graph-Theoretic Approach. CSB 2004: 236-244
Coauthor Index
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