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Journal Articles
- 2020
[j15]Casimiro Aday Curbelo Montañez
, Paul Fergus, Carl Chalmers, Nurul Hashimah Ahamed Hassain Malim, Basma Abdulaimma, Denis Reilly, Francesco Falciani:
SAERMA: Stacked Autoencoder Rule Mining Algorithm for the Interpretation of Epistatic Interactions in GWAS for Extreme Obesity. IEEE Access 8: 112379-112392 (2020)- [j14]Victoria A. Sleight, Philipp Antczak, Francesco Falciani, Melody S. Clark:
Computationally predicted gene regulatory networks in molluscan biomineralization identify extracellular matrix production and ion transportation pathways. Bioinform. 36(5): 1326-1332 (2020) - 2019
- [j13]David Hodgson, Andrew D. Rowan, Francesco Falciani, Carole J. Proctor:
Systems biology reveals how altered TGFβ signalling with age reduces protection against pro-inflammatory stimuli. PLoS Comput. Biol. 15(1) (2019) - 2016
- [j12]Ákos Tényi, Pedro de Atauri, David Gomez-Cabrero, Isaac Cano, Kim Clarke, Francesco Falciani, Marta Cascante, Josep Roca, Dieter Maier:
ChainRank, a chain prioritisation method for contextualisation of biological networks. BMC Bioinform. 17: 17 (2016) - [j11]Victor Trevino, Alberto Cassese, Zsuzsanna Nagy, Xiaodong Zhuang, John M. Herbert, Philipp Antzack, Kim Clarke, Nicholas Davies, Ayesha Rahman, Moray J. Campbell, Michele Guindani, Roy Bicknell, Marina Vannucci, Francesco Falciani:
A Network Biology Approach Identifies Molecular Cross-Talk between Normal Prostate Epithelial and Prostate Carcinoma Cells. PLoS Comput. Biol. 12(4) (2016) - 2012
- [j10]Roberto-Rafael Ramos-Rodriguez, Raquel Cuevas-Diaz-Duran, Francesco Falciani, José Gerardo Tamez-Peña, Victor Trevino:
COMPADRE: an R and web resource for pathway activity analysis by component decompositions. Bioinform. 28(20): 2701-2702 (2012) - 2011
- [j9]Dieter Maier, Wenzel Kalus, Martin Wolff, Susana G. Kalko, Josep Roca, Igor Marín de Mas, Nil Turan, Marta Cascante, Francesco Falciani, Miguel Hernandez, Jordi Villà-Freixa, Sascha Losko:
Knowledge management for systems biology a general and visually driven framework applied to translational medicine. BMC Syst. Biol. 5: 38 (2011) - [j8]Rita Gupta, Anna Stincone, Philipp Antczak, Sarah Durant, Roy Bicknell, Andreas Bikfalvi, Francesco Falciani:
A computational framework for gene regulatory network inference that combines multiple methods and datasets. BMC Syst. Biol. 5: 52 (2011) - [j7]Tim D. Williams, Nil Turan, Amer M. Diab, Huifeng Wu, Carolynn Mackenzie, Katie L. Bartie, Olga Hrydziuszko, Brett P. Lyons, Grant D. Stentiford, John M. Herbert, Joseph K. Abraham, Ioanna Katsiadaki, Michael J. Leaver, John B. Taggart, Stephen G. George, Mark R. Viant, Kevin J. Chipman, Francesco Falciani:
Towards a System Level Understanding of Non-Model Organisms Sampled from the Environment: A Network Biology Approach. PLoS Comput. Biol. 7(8) (2011) - [j6]Nil Turan, Susana G. Kalko, Anna Stincone, Kim Clarke, Ayesha Sabah, Katherine Howlett, S. John Curnow, Diego A. Rodriguez, Marta Cascante, Laura O'Neill, Stuart Egginton, Josep Roca, Francesco Falciani:
A Systems Biology Approach Identifies Molecular Networks Defining Skeletal Muscle Abnormalities in Chronic Obstructive Pulmonary Disease. PLoS Comput. Biol. 7(9) (2011) - 2008
- [j5]Katrin Sameith, Philipp Antczak, Elliot Marston, Nil Turan, Dieter Maier, Tanja Stankovic, Francesco Falciani:
Functional modules integrating essential cellular functions are predictive of the response of leukaemia cells to DNA damage. Bioinform. 24(22): 2602-2607 (2008) - 2006
- [j4]Victor Trevino, Francesco Falciani:
GALGO: an R package for multivariate variable selection using genetic algorithms. Bioinform. 22(9): 1154-1156 (2006) - 2005
- [j3]Matthew J. Beal, Francesco Falciani, Zoubin Ghahramani, Claudia Rangel, David L. Wild:
A Bayesian approach to reconstructing genetic regulatory networks with hidden factors. Bioinform. 21(3): 349-356 (2005) - [j2]Wei Chu, Zoubin Ghahramani, Francesco Falciani, David L. Wild:
Biomarker discovery in microarray gene expression data with Gaussian processes. Bioinform. 21(16): 3385-3393 (2005) - 2004
- [j1]Claudia Rangel, John Angus, Zoubin Ghahramani, Maria Lioumi, Elizabeth Sotheran, Alessia Gaiba, David L. Wild, Francesco Falciani:
Modeling T-cell activation using gene expression profiling and state-space models. Bioinform. 20(9): 1361-1372 (2004)
Informal and Other Publications
- 2019
- [i2]Casimiro Aday Curbelo Montañez, Paul Fergus, Carl Chalmers, Nurul Hashimah Ahamed Hassain Malim, Basma Abdulaimma, Denis Reilly, Francesco Falciani:
SAERMA: Stacked Autoencoder Rule Mining Algorithm for the Interpretation of Epistatic Interactions in GWAS for Extreme Obesity. CoRR abs/1908.10166 (2019) - 2018
- [i1]Catalina Cangea, Arturas Grauslys, Pietro Liò, Francesco Falciani:
Structure-Based Networks for Drug Validation. CoRR abs/1811.09714 (2018)
Coauthor Index
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