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ORCIDYi Gao 0002
Person information
- affiliation: Shenzhen University, School of Biomedical Engineering, China
- affiliation (former): Stony Brook University, Department of Biomedical Informatics, NY, USA
- affiliation (PhD 2011): Georgia Institute of Technology, Schools of Electrical & Computer Engineering and Biomedical Engineering, Atlanta, GA, USA
Other persons with the same name
- Yi Gao — disambiguation page
- Yi Gao 0001
![[0000-0001-7897-5965]](https://dblp.dagstuhl.de/img/orcid-mark.12x12.png "0000-0001-7897-5965")
— Alibaba-Zhejiang University Joint Institute of Frontier Technologies, Hangzhou, China (and 1 more) - Yi Gao 0003 — Northwest University, Xi'an, China
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Journal Articles
- 2023
[j24]Xue Li, Jun Huang, Cuiting Wang, Xiaxia Yu, Tianhao Zhao, Chuan Huang, Yi Gao:
Expectation-maximization algorithm leads to domain adaptation for a perineural invasion and nerve extraction task in whole slide digital pathology images. Medical Biol. Eng. Comput. 61(2): 457-473 (2023)- [j23]Tian Mou, Jianwen Liang, Trung-Nghia Vu, Mu Tian, Yi Gao:
A Comprehensive Landscape of Imaging Feature-Associated RNA Expression Profiles in Human Breast Tissue. Sensors 23(3): 1432 (2023) - 2022
- [j22]Sai Zhang, Liangjia Zhu, Yi Gao:
An efficient deep equilibrium model for medical image segmentation. Comput. Biol. Medicine 148: 105831 (2022) - [j21]Haofan Huang, Xiaxia Yu, Mu Tian, Weizhen He, Shawn Xiang Li, Zhengrong Liang, Yi Gao:
Open-source algorithm and software for computed tomography-based virtual pancreatoscopy and other applications. Vis. Comput. Ind. Biomed. Art 5(1): 20 (2022) - [j20]Jia Ying, Renee Cattell, Tianyun Zhao, Lan Lei, Zhao Jiang, Shahid M. Hussain, Yi Gao, H.-H. Sherry Chow, Alison T. Stopeck, Patricia A. Thompson, Chuan Huang:
Two fully automated data-driven 3D whole-breast segmentation strategies in MRI for MR-based breast density using image registration and U-Net with a focus on reproducibility. Vis. Comput. Ind. Biomed. Art 5(1): 25 (2022) - [j19]Yi Gao, Cheng Chang, Xiaxia Yu, Pengjin Pang, Nian Xiong, Chuan Huang:
A VR-based volumetric medical image segmentation and visualization system with natural human interaction. Virtual Real. 26(2): 415-424 (2022) - 2021
- [j18]Jun Huang, Xue Li, Jing Wang, Xiaxia Yu, Liangjia Zhu, Ying Zhan, Yi Gao, Chuan Huang:
Cross-Dataset Multiple Organ Segmentation From CT Imagery Using FBP-Derived Domain Adaptation. IEEE Access 9: 25025-25035 (2021) - [j17]Xiaxia Yu, Bingshuai Zhao, Haofan Huang, Mu Tian, Sai Zhang, Hongping Song, Zengshan Li, Kun Huang, Yi Gao:
An Open Source Platform for Computational Histopathology. IEEE Access 9: 73651-73661 (2021) - [j16]Mu Tian, Jinchan He, Xiaxia Yu, Chudong Cai, Yi Gao:
MCMC Guided CNN Training and Segmentation for Pancreas Extraction. IEEE Access 9: 90539-90554 (2021) - 2019
- [j15]Le Hou, Vu Nguyen, Ariel B. Kanevsky, Dimitris Samaras, Tahsin M. Kurç, Tianhao Zhao, Rajarsi R. Gupta, Yi Gao, Wenjin Chen, David J. Foran, Joel H. Saltz:
Sparse autoencoder for unsupervised nucleus detection and representation in histopathology images. Pattern Recognit. 86: 188-200 (2019) - 2017
- [j14]George Teodoro, Tahsin M. Kurç, Luis F. R. Taveira, Alba C. M. A. Melo, Yi Gao:
Algorithm sensitivity analysis and parameter tuning for tissue image segmentation pipelines. Bioinform. 33(7): 1064-1072 (2017) - [j13]Vadim Ratner, Yi Gao, Hedok Lee, Rena Elkin, Maiken Nedergaard, Helene Benveniste, Allen R. Tannenbaum:
Cerebrospinal and interstitial fluid transport via the glymphatic pathway modeled by optimal mass transport. NeuroImage 152: 530-537 (2017) - 2016
- [j12]Yi Gao, Sylvain Bouix:
Statistical shape analysis using 3D Poisson equation - A quantitatively validated approach. Medical Image Anal. 30: 72-84 (2016) - 2015
- [j11]Yi Hong, Yi Gao, Marc Niethammer, Sylvain Bouix:
Shape analysis based on depth-ordering. Medical Image Anal. 25(1): 2-10 (2015) - [j10]Yi Gao, Liangjia Zhu, Joshua Cates, Rob S. MacLeod, Sylvain Bouix, Allen R. Tannenbaum:
A Kalman Filtering Perspective for Multiatlas Segmentation. SIAM J. Imaging Sci. 8(2): 1007-1029 (2015) - 2014
- [j9]Tammy Riklin Raviv, Yi Gao, James J. Levitt, Sylvain Bouix:
Statistical Shape Analysis of Neuroanatomical Structures via Level-Set-based Shape Morphing. SIAM J. Imaging Sci. 7(3): 1645-1668 (2014) - [j8]Liangjia Zhu, Yi Gao, Vikram V. Appia, Anthony J. Yezzi, Chesnal D. Arepalli, Tracy L. Faber, Arthur E. Stillman, Allen R. Tannenbaum:
A Complete System for Automatic Extraction of Left Ventricular Myocardium From CT Images Using Shape Segmentation and Contour Evolution. IEEE Trans. Image Process. 23(3): 1340-1351 (2014) - 2013
- [j7]Liangjia Zhu, Yi Gao, Vikram V. Appia, Anthony J. Yezzi, Chesnal D. Arepalli, Tracy L. Faber, Arthur E. Stillman, Allen R. Tannenbaum:
Automatic Delineation of the Myocardial Wall From CT Images Via Shape Segmentation and Variational Region Growing. IEEE Trans. Biomed. Eng. 60(10): 2887-2895 (2013) - [j6]Yi Gao, Sylvain Bouix, Martha Elizabeth Shenton, Allen R. Tannenbaum:
Sparse Texture Active Contour. IEEE Trans. Image Process. 22(10): 3866-3878 (2013) - [j5]Liangjia Zhu, Yi Gao, Anthony J. Yezzi, Allen R. Tannenbaum:
Automatic Segmentation of the Left Atrium From MR Images via Variational Region Growing With a Moments-Based Shape Prior. IEEE Trans. Image Process. 22(12): 5111-5122 (2013) - 2012
- [j4]Yi Gao, Benjamin Corn, Dan Schifter, Allen R. Tannenbaum:
Multiscale 3D shape representation and segmentation with applications to hippocampal/caudate extraction from brain MRI. Medical Image Anal. 16(2): 374-385 (2012) - [j3]Yi Gao, Ron Kikinis, Sylvain Bouix, Martha Elizabeth Shenton, Allen R. Tannenbaum:
A 3D interactive multi-object segmentation tool using local robust statistics driven active contours. Medical Image Anal. 16(6): 1216-1227 (2012) - [j2]Yi Gao, Yogesh Rathi, Sylvain Bouix, Allen R. Tannenbaum:
Filtering in the Diffeomorphism Group and the Registration of Point Sets. IEEE Trans. Image Process. 21(10): 4383-4396 (2012) - 2010
- [j1]Yi Gao, Romeil Sandhu, Gabor Fichtinger, Allen R. Tannenbaum:
A Coupled Global Registration and Segmentation Framework With Application to Magnetic Resonance Prostate Imagery. IEEE Trans. Medical Imaging 29(10): 1781-1794 (2010)
Conference and Workshop Papers
- 2024
- [c27]Weizhen He, Haoran Zhu, Jialing Feng, Qinzhu Yang, Yanzhe Wei, Zhengji Huang, Huiren Tao, Yi Gao:
Combing 3D body surface and CT volumetric data for ankylosing spondylitis surgery outcome simulation. ISBI 2024: 1-5 - 2023
- [c26]Zengan Huang, Qinzhu Yang, Mu Tian, Yi Gao:
Synthesizing with Diffusion model for improving medical image segmentation performance. BIBM 2023: 1977-1982 - 2022
- [c25]Mu Tian, Qinzhu Yang, Yi Gao:
Multi-scale Multi-task Distillation for Incremental 3D Medical Image Segmentation. ECCV Workshops (3) 2022: 369-384 - 2019
- [c24]Shuxiu Cai, Xiaxia Yu, Qiaochu Zhang, Chuan Huang, Yi Gao:
Is hippocampus getting bumpier with age: a quantitative analysis of fine-scale dentational feature under the hippocampus on 552 healthy subjects. Medical Imaging: Image Processing 2019: 1094935 - 2017
- [c23]Le Hou, Dimitris Samaras, Tahsin M. Kurç, Yi Gao, Joel H. Saltz:
ConvNets with Smooth Adaptive Activation Functions for Regression. AISTATS 2017: 430-439 - [c22]Naiyun Zhou, Xiaxia Yu, Tianhao Zhao, Si Wen, Fusheng Wang, Wei Zhu, Tahsin M. Kurç, Allen R. Tannenbaum, Joel H. Saltz, Yi Gao:
Evaluation of nucleus segmentation in digital pathology images through large scale image synthesis. Medical Imaging: Digital Pathology 2017: 101400K - 2016
- [c21]Erich Bremer, Tahsin M. Kurç, Yi Gao, Joel H. Saltz, Jonas S. Almeida:
Safe "cloudification" of large images through picker APIs. AMIA 2016 - [c20]Le Hou, Dimitris Samaras, Tahsin M. Kurç, Yi Gao, James E. Davis, Joel H. Saltz:
Patch-Based Convolutional Neural Network for Whole Slide Tissue Image Classification. CVPR 2016: 2424-2433 - [c19]Yi Gao, William Liu, Shipra Arjun, Liangjia Zhu, Vadim Ratner, Tahsin M. Kurç, Joel H. Saltz, Allen R. Tannenbaum:
Multi-scale learning based segmentation of glands in digital colonrectal pathology images. Medical Imaging: Digital Pathology 2016: 97910M - [c18]Yi Gao, Vadim Ratner, Liangjia Zhu, Tammy Diprima, Tahsin M. Kurç, Allen R. Tannenbaum, Joel H. Saltz:
Hierarchical nucleus segmentation in digital pathology images. Medical Imaging: Digital Pathology 2016: 979117 - 2014
- [c17]Yi Gao, Sylvain Bouix:
Signed poisson map for shape analysis. ISBI 2014: 389-392 - [c16]Yi Hong, Yi Gao, Marc Niethammer, Sylvain Bouix:
Depth-Based Shape-Analysis. MICCAI (3) 2014: 17-24 - [c15]Yi Gao, Liangjia Zhu, Isaiah Norton, Nathalie Y. R. Agar, Allen R. Tannenbaum:
Reconstruction and feature selection for desorption electrospray ionization mass spectroscopy imagery. Medical Imaging: Image-Guided Procedures 2014: 90360D - [c14]Yi Gao, Allen R. Tannenbaum, Sylvain Bouix:
A framework for joint image-and-shape analysis. Medical Imaging: Image Processing 2014: 90340V - [c13]Yi Gao, Liangjia Zhu, Sylvain Bouix, Allen R. Tannenbaum:
Interpolation of longitudinal shape and image data via optimal mass transport. Medical Imaging: Image Processing 2014: 90342X - 2012
- [c12]Tammy Riklin Raviv, Yi Gao, James J. Levitt, Sylvain Bouix:
Statistical Shape Analysis for Population Studies via Level-Set Based Shape Morphing. ECCV Workshops (1) 2012: 42-51 - [c11]Liangjia Zhu, Yi Gao, Anthony J. Yezzi, Robert S. MacLeod, Joshua Cates, Allen R. Tannenbaum:
Automatic segmentation of the left atrium from MRI images using salient feature and contour evolution. EMBC 2012: 3211-3214 - [c10]Yi Gao, Sylvain Bouix:
Synthesis of Realistic Subcortical Anatomy with Known Surface Deformations. MeshMed 2012: 80-88 - 2011
- [c9]Yi Gao, Allen R. Tannenbaum:
Combining atlas and active contour for automatic 3D medical image segmentation. ISBI 2011: 1401-1404 - [c8]Liangjia Zhu, Yi Gao, Vandana Mohan, Arthur E. Stillman, Tracy L. Faber, Allen R. Tannenbaum:
Estimation of myocardial volume at risk from CT angiography. Medical Imaging: Computer-Aided Diagnosis 2011: 79632A - 2010
- [c7]Yi Gao, Allen R. Tannenbaum, Ron Kikinis:
Simultaneous Multi-object Segmentation Using Local Robust Statistics and Contour Interaction. MCV 2010: 195-203 - [c6]Yi Gao, John Melonakos, Allen R. Tannenbaum:
Fast Hamilton-Jacobi equation solver and neural fiber bundle extraction. Medical Imaging: Image Processing 2010: 76231F - [c5]Yi Gao, Allen R. Tannenbaum:
'Active contour without edges', on parametric manifolds. Medical Imaging: Image Processing 2010: 76233P - [c4]Yi Gao, Behnood Gholami, Robert S. MacLeod, Joshua Blauer, Wassim M. Haddad, Allen R. Tannenbaum:
Segmentation of the endocardial wall of the left atrium using local region-based active contours and statistical shape learning. Medical Imaging: Image Processing 2010: 76234Z - [c3]Yi Gao, Allen R. Tannenbaum:
Image processing and registration in a point set representation. Medical Imaging: Image Processing 2010: 762308 - [c2]Yi Gao, Allen R. Tannenbaum:
Shape based MRI prostate image segmentation using local information driven directional distance Bayesian method. Medical Imaging: Image Processing 2010: 762315 - 2007
- [c1]John Melonakos, Yi Gao, Allen R. Tannenbaum:
Tissue tracking: applications for brain MRI classification. Medical Imaging: Image Processing 2007: 651218
Informal and Other Publications
- 2023
- [i8]Mu Tian, Xiaohui Chen, Yi Gao:
A dynamic interactive learning framework for automated 3D medical image segmentation. CoRR abs/2312.06072 (2023) - [i7]Mu Tian, Qinzhu Yang, Yi Gao:
AttenScribble: Attentive Similarity Learning for Scribble-Supervised Medical Image Segmentation. CoRR abs/2312.06614 (2023) - 2020
- [i6]Jinchan He, Xiaxia Yu, Chudong Cai, Yi Gao:
MCMC Guided CNN Training and Segmentation for Pancreas Extraction. CoRR abs/2003.03938 (2020) - 2017
- [i5]Le Hou, Vu Nguyen, Dimitris Samaras, Tahsin M. Kurç, Yi Gao, Tianhao Zhao, Joel H. Saltz:
Sparse Autoencoder for Unsupervised Nucleus Detection and Representation in Histopathology Images. CoRR abs/1704.00406 (2017) - [i4]Naiyun Zhou, Andriy Fedorov, Fiona Fennessy, Ron Kikinis, Yi Gao:
Large scale digital prostate pathology image analysis combining feature extraction and deep neural network. CoRR abs/1705.02678 (2017) - 2016
- [i3]Le Hou, Dimitris Samaras, Tahsin M. Kurç, Yi Gao, Joel H. Saltz:
Neural Networks with Smooth Adaptive Activation Functions for Regression. CoRR abs/1608.06557 (2016) - 2015
- [i2]Le Hou, Dimitris Samaras, Tahsin M. Kurç, Yi Gao, James E. Davis, Joel H. Saltz:
Efficient Multiple Instance Convolutional Neural Networks for Gigapixel Resolution Image Classification. CoRR abs/1504.07947 (2015) - 2012
- [i1]Romeil Sandhu, Ayelet Dominitz, Yi Gao, Allen R. Tannenbaum:
Volumetric Mapping of Genus Zero Objects via Mass Preservation. CoRR abs/1205.1225 (2012)
Coauthor Index
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