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ORCIDXiaoqiu Huang 0001
Person information
- affiliation: Iowa State University, Ames, USA
Other persons with the same name
- Xiaoqiu Huang 0002 — Tsinghua National Laboratory for Information Science and Technology, Beijing, China (and 1 more)
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2020 – today
- 2022
[c17]Alvin Chon, Pawel Górecki, Oliver Eulenstein, Xiaoqiu Huang, Ali Jannesari
:
Scalable and Extensible Robinson-Foulds for Comparative Phylogenetics. IPDPS Workshops 2022: 166-175
2010 – 2019
- 2017
- [j17]Philip L. Tzou, Xiaoqiu Huang, Robert W. Shafer:
NucAmino: a nucleotide to amino acid alignment optimized for virus gene sequences. BMC Bioinform. 18(1): 138:1-138:6 (2017) - 2011
- [j16]Ankit Agrawal, Xiaoqiu Huang:
Pairwise Statistical Significance of Local Sequence Alignment Using Sequence-Specific and Position-Specific Substitution Matrices. IEEE ACM Trans. Comput. Biol. Bioinform. 8(1): 194-205 (2011) - 2010
- [c16]Ankit Agrawal, Alok N. Choudhary, Xiaoqiu Huang:
Derived distribution points heuristic for fast pairwise statistical significance estimation. BCB 2010: 312-321 - [c15]Ankit Agrawal, Alok N. Choudhary, Xiaoqiu Huang:
Non-Conservative Pairwise Statistical Significance of Local Sequence Alignment Using Position-Specific Substitution Matrices. BIOCOMP 2010: 262-268
2000 – 2009
- 2009
- [j15]Ankit Agrawal, Xiaoqiu Huang:
PSIBLAST_PairwiseStatSig: reordering PSI-BLAST hits using pairwise statistical significance. Bioinform. 25(8): 1082-1083 (2009) - [j14]Ankit Agrawal, Xiaoqiu Huang:
Pairwise statistical significance of local sequence alignment using multiple parameter sets and empirical justification of parameter set change penalty. BMC Bioinform. 10(S-3) (2009) - [j13]Xiaoqiu Huang, Martin Vingron:
Maximum Similarity: A New Formulation of Phylogenetic Reconstruction. J. Comput. Biol. 16(7): 887-896 (2009) - 2008
- [j12]Ankit Agrawal, Volker Brendel, Xiaoqiu Huang:
Pairwise statistical significance and empirical determination of effective gap opening penalties for protein local sequence alignment. Int. J. Comput. Biol. Drug Des. 1(4): 347-367 (2008) - [j11]Xiaoqiu Huang:
Sequence Alignment with an Appropriate Substitution Matrix. J. Comput. Biol. 15(2): 129-138 (2008) - [c14]Ankit Agrawal, Xiaoqiu Huang:
Conservative, Non-conservative and Average Pairwise Statistical Significance of Local Sequence Alignment. BIBM 2008: 433-436 - [c13]Ankit Agrawal, Xiaoqiu Huang:
Pairwise statistical significance of local sequence alignment using multiple parameter sets. DTMBIO 2008: 53-60 - [c12]Ankit Agrawal, Xiaoqiu Huang:
Pairwise DNA Alignment with Sequence Specific Transition-Transversion Ratio Using Multiple Parameter Sets. ICIT 2008: 89-93 - [c11]Ankit Agrawal, Xiaoqiu Huang:
Pairwise Statistical Significance of Local Sequence Alignment Using Substitution Matrices with Sequence-Pair-Specific Distance. ICIT 2008: 94-99 - [c10]Ankit Agrawal, Xiaoqiu Huang:
DNAlignTT: Pairwise DNA alignment with sequence specific transition-transversion ratio. EIT 2008: 453-455 - [c9]Ankit Agrawal, Volker Brendel, Xiaoqiu Huang:
Pairwise Statistical Significance Versus Database Statistical Significance for Local Alignment of Protein Sequences. ISBRA 2008: 50-61 - [c8]Ankit Agrawal, Arka P. Ghosh, Xiaoqiu Huang:
Estimating Pairwise Statistical Significance of Protein Local Alignments Using a Clustering-Classification Approach Based on Amino Acid Composition. ISBRA 2008: 62-73 - 2005
- [j10]Jianmin Wang, Xiaoqiu Huang:
A method for finding single-nucleotide polymorphisms with allele frequencies in sequences of deep coverage. BMC Bioinform. 6: 220 (2005) - 2004
- [j9]Xiaoqiu Huang, Liang Ye, Hui-Hsien Chou, I-Hsuan Yang, Kun-Mao Chao:
Efficient combination of multiple word models for improved sequence comparison. Bioinform. 20(16): 2529-2533 (2004) - [c7]I-Hsuan Yang, Sheng-Ho Wang, Yang-Ho Chen, Pao-Hsian Huang, Liang Ye, Xiaoqiu Huang, Kun-Mao Chao:
Efficient Methods for Generating Optimal Single and Multiple Spaced Seeds. BIBE 2004: 411-418 - [c6]Xiaoqiu Huang, Liang Ye, I-Hsuan Yang, Kun-Mao Chao:
A Sensitive Sequence Comparison Method. SNPD 2004: 77-80 - 2003
- [j8]Yaw-Ling Lin, Xiaoqiu Huang, Tao Jiang, Kun-Mao Chao:
MAVG: locating non-overlapping maximum average segments in a given sequence. Bioinform. 19(1): 151-152 (2003) - [j7]Xiaoqiu Huang, Kun-Mao Chao:
A generalized global alignment algorithm. Bioinform. 19(2): 228-233 (2003) - [j6]Geo Pertea, Xiaoqiu Huang, Feng Liang, Valentin Antonescu, Razvan Sultana, Svetlana Karamycheva, Yuandan Lee, Joseph White, Foo Cheung, Babak Parvizi, Jennifer Tsai, John Quackenbush:
TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets. Bioinform. 19(5): 651-652 (2003) - [j5]Natsuhiko Futamura, Srinivas Aluru, Xiaoqiu Huang:
Parallel Syntenic Alignments. Parallel Process. Lett. 13(4): 689-703 (2003) - 2002
- [c5]Natsuhiko Futamura, Srinivas Aluru, Xiaoqiu Huang:
Parallel Syntenic Alignments. HiPC 2002: 420-430
1990 – 1999
- 1998
- [c4]Xiaoqiu Huang:
Performance of the CAP2 sequence assembly program. Mathematical Support for Molecular Biology 1998: 259-269 - 1994
- [c3]Xiaoqiu Huang:
A Context Dependent Method for Comparing Sequences. CPM 1994: 54-63 - [c2]Xiaoqiu Huang, Pavel A. Pevzner, Webb Miller:
Parametric Recomuting in Alignment Graphs. CPM 1994: 87-101 - 1992
- [j4]Xiaoqiu Huang, Webb Miller, Scott Schwartz, Ross C. Hardison:
Parallelization of a local similarity algorithm. Comput. Appl. Biosci. 8(2): 155-165 (1992) - 1990
- [j3]Xiaoqiu Huang, Ross C. Hardison, Webb Miller:
A space-efficient algorithm for local similarities. Comput. Appl. Biosci. 6(4): 373-381 (1990) - [c1]Xiaoqiu Huang:
Computing Local Sequence Similarities on a Hypercube. ICPP (3) 1990: 360-361
1980 – 1989
- 1989
- [j2]Xiaoqiu Huang:
A space-efficient parallel sequence comparison algorithm for a message-passing multiprocessor. Int. J. Parallel Program. 18(3): 223-239 (1989) - 1988
- [j1]Xiaoqiu Huang:
A Lower Bound for the Edit-Distance Problem Under an Arbitrary Cost Function. Inf. Process. Lett. 27(6): 319-321 (1988)
Coauthor Index
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