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2020 – today
- 2024
[j30]Karin Slater, Paul N. Schofield
, James Wright, Paul Clift, Anushka Irani, William Bradlow, Furqan Aziz, Georgios V. Gkoutos:
Talking about diseases; developing a model of patient and public-prioritised disease phenotypes. npj Digit. Medicine 7(1) (2024)- 2023
- [j29]Luke T. Slater, John A. Williams, Paul N. Schofield, Sophie Russell, Samantha C. Pendleton, Andreas Karwath, Hilary Fanning, Simon Ball, Robert Hoehndorf, Georgios V. Gkoutos:
Klarigi: Characteristic explanations for semantic biomedical data. Comput. Biol. Medicine 153: 106425 (2023) - [c18]Núria Queralt-Rosinach, Paul N. Schofield, Marco Roos, Robert Hoehndorf:
Updating the CEMO ontology for future epidemiological challenges. SWAT4HCLS 2023: 151-152 - 2021
- [j28]Senay Kafkas, Sara Althubaiti, Georgios V. Gkoutos, Robert Hoehndorf, Paul N. Schofield:
Linking common human diseases to their phenotypes; development of a resource for human phenomics. J. Biomed. Semant. 12(1): 17 (2021) - [j27]Luke T. Slater, John A. Williams, Andreas Karwath, Hilary Fanning, Simon Ball, Paul N. Schofield, Robert Hoehndorf, Georgios V. Gkoutos:
Multi-faceted semantic clustering with text-derived phenotypes. Comput. Biol. Medicine 138: 104904 (2021) - [c17]Luke T. Slater, John A. Williams, Paul N. Schofield, Georgios V. Gkoutos:
Exploring Sentiment as a Potential Indicator of Bias in Disease Ontologies. BIBM 2021: 1826-1834 - [c16]Núria Queralt-Rosinach, Mark D. Wilkinson, Rajaram Kaliyaperumal, César Henrique Bernabé, Qinqin Long, Michel Dumontier, Paul N. Schofield, Marco Roos:
Reuse of Design Pattern Measurements for Health Data. JOWO 2021
2010 – 2019
- 2019
- [j26]Imane Boudellioua, Maxat Kulmanov, Paul N. Schofield, Georgios V. Gkoutos, Robert Hoehndorf:
DeepPVP: phenotype-based prioritization of causative variants using deep learning. BMC Bioinform. 20(1): 65 (2019) - 2018
- [j25]Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf:
The anatomy of phenotype ontologies: principles, properties and applications. Briefings Bioinform. 19(5): 1008-1021 (2018) - [j24]Maxat Kulmanov, Paul N. Schofield, Georgios V. Gkoutos, Robert Hoehndorf:
Ontology-based validation and identification of regulatory phenotypes. Bioinform. 34(17): i857-i865 (2018) - [i2]Balázs G. Madas, Paul N. Schofield:
Survey on data management in radiation protection research. CoRR abs/1805.05463 (2018) - 2017
- [j23]Miguel Ángel Rodríguez-García, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf:
Integrating phenotype ontologies with PhenomeNET. J. Biomed. Semant. 8(1): 58:1-58:11 (2017) - [j22]Imane Boudellioua, Rozaimi B. Mahamad Razali, Maxat Kulmanov, Yasmeen Hashish, Vladimir B. Bajic, Eva Goncalves-Serra, Nadia Schoenmakers, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf:
Semantic prioritization of novel causative genomic variants. PLoS Comput. Biol. 13(4) (2017) - 2016
- [j21]Hannah M. Fisher, Robert Hoehndorf, Bruno S. Bazelato, Soheil S. Dadras, Lloyd E. King, Georgios V. Gkoutos, John P. Sundberg, Paul N. Schofield:
DermO; an ontology for the description of dermatologic disease. J. Biomed. Semant. 7: 38 (2016) - [j20]Luke T. Slater, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf:
Using AberOWL for fast and scalable reasoning over BioPortal ontologies. J. Biomed. Semant. 7: 49 (2016) - [c15]Robert Hoehndorf, Liam Mencel, Georgios V. Gkoutos, Paul N. Schofield:
Large-Scale Reasoning over Functions in Biomedical Ontologies. FOIS 2016: 299-312 - [c14]Miguel Ángel Rodríguez-García, Luke T. Slater, Imane Boudellioua, Paul N. Schofield, Georgios V. Gkoutos, Robert Hoehndorf:
Updates to the AberOWL Ontology Repository. ICBO/BioCreative 2016 - [c13]Luke T. Slater, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf:
To MIREOT or not to MIREOT? A Case Study of the Impact of Using MIREOT in the Experimental Factor Ontology (EFO). ICBO/BioCreative 2016 - [c12]Miguel Ángel Rodríguez-García, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf:
Integrating phenotype ontologies with PhenomeNET. OM@ISWC 2016: 201-209 - 2015
- [j19]Robert Hoehndorf, Paul N. Schofield, Georgios V. Gkoutos:
The role of ontologies in biological and biomedical research: a functional perspective. Briefings Bioinform. 16(6): 1069-1080 (2015) - [j18]Robert Hoehndorf, Michael Gruenberger, Georgios V. Gkoutos, Paul N. Schofield:
Similarity-based search of model organism, disease and drug effect phenotypes. J. Biomed. Semant. 6: 6 (2015) - [j17]Robert Hoehndorf, Luke T. Slater, Paul N. Schofield, Georgios V. Gkoutos:
Aber-OWL: a framework for ontology-based data access in biology. BMC Bioinform. 16: 26:1-26:9 (2015) - [c11]Luke T. Slater, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf:
Using Aber-OWL for fast and scalable reasoning over BioPortal ontologies. ICBO 2015 - [c10]Luke T. Slater, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf:
AberOWL: an ontology portal with OWL EL reasoning. ICBO 2015 - [c9]Luke T. Slater, Miguel Ángel Rodríguez-García, Keiron O'Shea, Paul N. Schofield, Georgios V. Gkoutos, Robert Hoehndorf:
Experiences with Aber-OWL, an Ontology Repository with OWL EL Reasoning. OWLED 2015: 81-86 - [c8]Miguel Ángel Rodríguez-García, Luke T. Slater, Keiron O'Shea, Paul N. Schofield, Georgios V. Gkoutos, Robert Hoehndorf:
Visualising Ontologies with AberOWL. SWAT4LS 2015: 183-192 - 2014
- [j16]Robert Hoehndorf, Tanya Hiebert, Nigel W. Hardy, Paul N. Schofield, Georgios V. Gkoutos, Michel Dumontier:
Mouse model phenotypes provide information about human drug targets. Bioinform. 30(5): 719-725 (2014) - [j15]Sebastian Köhler, Sandra C. Doelken, Christopher J. Mungall, Sebastian Bauer, Helen V. Firth, Isabelle Bailleul-Forestier, Graeme C. M. Black, Danielle L. Brown, Michael Brudno, Jennifer Campbell, David R. FitzPatrick, Janan T. Eppig, Andrew P. Jackson, Kathleen Freson, Marta Gîrdea, Ingo Helbig, Jane A. Hurst, Johanna Jähn, Laird G. Jackson, Anne M. Kelly, David H. Ledbetter, Sahar Mansour, Christa L. Martin, Celia Moss, Andrew D. Mumford, Willem H. Ouwehand, Soo-Mi Park, Erin Rooney Riggs, Richard H. Scott, Sanjay Sisodiya, Steven Van Vooren, Ronald J. Wapner, Andrew O. M. Wilkie, Caroline F. Wright, Anneke T. Vulto-van Silfhout, Nicole de Leeuw, Bert B. A. de Vries, Nicole L. Washington, Cynthia L. Smith, Monte Westerfield, Paul N. Schofield, Barbara J. Ruef, Georgios V. Gkoutos, Melissa A. Haendel, Damian Smedley, Suzanna E. Lewis, Peter N. Robinson:
The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data. Nucleic Acids Res. 42(Database-Issue): 966-974 (2014) - [c7]Robert Hoehndorf, Luke T. Slater, Paul N. Schofield, Georgios V. Gkoutos:
Aber-OWL: A Framework for Ontology-based Data Access in Biology. SWAT4LS 2014 - [i1]Robert Hoehndorf, Luke T. Slater, Paul N. Schofield, Georgios V. Gkoutos:
Aber-OWL: a framework for ontology-based data access in biology. CoRR abs/1407.6812 (2014) - 2013
- [j14]Paul N. Schofield, John P. Sundberg, Beth A. Sundberg, Colin McKerlie, Georgios V. Gkoutos:
The mouse pathology ontology, MPATH; structure and applications. J. Biomed. Semant. 4: 18 (2013) - 2012
- [j13]Pascale Gaudet, Cecilia N. Arighi, Frederic B. Bastian, Alex Bateman, Judith A. Blake, J. Michael Cherry, Peter D'Eustachio, Robert D. Finn, Michelle G. Giglio, Lynette Hirschman, Renate Kania, William Klimke, Maria Jesus Martin, Ilene Karsch-Mizrachi, Monica C. Munoz-Torres, Darren A. Natale, Claire O'Donovan, B. F. Francis Ouellette, Kim D. Pruitt, Marc Robinson-Rechavi, Susanna-Assunta Sansone, Paul N. Schofield, Granger G. Sutton, Kimberly Van Auken, Sona Vasudevan, Cathy H. Wu, Jasmine Young, Raja Mazumder:
Recent advances in biocuration: Meeting Report from the fifth International Biocuration Conference. Database J. Biol. Databases Curation 2012 (2012) - [j12]Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf:
The Units Ontology: a tool for integrating units of measurement in science. Database J. Biol. Databases Curation 2012 (2012) - [c6]Robert Hoehndorf, Anika Oellrich, Dietrich Rebholz-Schuhmann, Paul N. Schofield, Georgios V. Gkoutos:
Linking PharmGKB to Phenotype Studies and Animal Models of Disease for Drug Repurposing. Pacific Symposium on Biocomputing 2012: 388-399 - 2011
- [j11]Pascale Gaudet, Amos Bairoch, Dawn Field, Susanna-Assunta Sansone, Chris F. Taylor, Teresa K. Attwood, Alex Bateman, Judith A. Blake, Carol J. Bult, J. Michael Cherry, Rex L. Chisholm, Guy Cochrane, Charles E. Cook, Janan T. Eppig, Michael Y. Galperin, Robert Gentleman, Carole A. Goble, Takashi Gojobori, John M. Hancock, Douglas G. Howe, Tadashi Imanishi, Janet Kelso, David Landsman, Suzanna E. Lewis, Ilene Karsch-Mizrachi, Sandra E. Orchard, B. F. Francis Ouellette, Shoba Ranganathan, Lorna J. Richardson, Philippe Rocca-Serra, Paul N. Schofield, Damian Smedley, Christopher Southan, Tin Wee Tan, Tatiana A. Tatusova, Patricia L. Whetzel, Owen White, Chisato Yamasaki:
Towards BioDBcore: a community-defined information specification for biological databases. Database J. Biol. Databases Curation 2011 (2011) - [j10]Robert Hoehndorf, Michel Dumontier, Anika Oellrich, Sarala M. Wimalaratne, Dietrich Rebholz-Schuhmann, Paul N. Schofield, Georgios V. Gkoutos:
A common layer of interoperability for biomedical ontologies based on OWL EL. Bioinform. 27(7): 1001-1008 (2011) - [j9]Ravensara S. Travillian, Tomasz Adamusiak, Tony Burdett, Michael Gruenberger, John M. Hancock, Ann-Marie Mallon, James Malone, Paul N. Schofield, Helen E. Parkinson:
Anatomy ontologies and potential users: bridging the gap. J. Biomed. Semant. 2(S-4): S3 (2011) - [j8]Sebastian Köhler, Sebastian Bauer, Chris Mungall, Gabriele Carletti, Cynthia L. Smith, Paul N. Schofield, Georgios V. Gkoutos, Peter N. Robinson:
Improving ontologies by automatic reasoning and evaluation of logical definitions. BMC Bioinform. 12: 418 (2011) - [j7]Pascale Gaudet, Amos Bairoch, Dawn Field, Susanna-Assunta Sansone, Chris F. Taylor, Teresa K. Attwood, Alex Bateman, Judith A. Blake, Carol J. Bult, J. Michael Cherry, Rex L. Chisholm, Guy Cochrane, Charles E. Cook, Janan T. Eppig, Michael Y. Galperin, Robert Gentleman, Carole A. Goble, Takashi Gojobori, John M. Hancock, Douglas G. Howe, Tadashi Imanishi, Janet Kelso, David Landsman, Suzanna E. Lewis, Ilene Karsch-Mizrachi, Sandra E. Orchard, B. F. Francis Ouellette, Shoba Ranganathan, Lorna J. Richardson, Philippe Rocca-Serra, Paul N. Schofield, Damian Smedley, Christopher Southan, Tin Wee Tan, Tatiana A. Tatusova, Patricia L. Whetzel, Owen White, Chisato Yamasaki:
Towards BioDBcore: a community-defined information specification for biological databases. Nucleic Acids Res. 39(Database-Issue): 7-10 (2011) - [c5]Ravensara S. Travillian, James Malone, Chao Pang, John M. Hancock, Peter W. H. Holland, Paul N. Schofield, Helen E. Parkinson:
The Vertebrate Bridging Ontology (VBO). ICBO 2011 - 2010
- [j6]Damian Smedley, Paul N. Schofield, Chao-Kung Chen, Vassilis Aidinis, Crysanthi Ainali, Jonathan B. L. Bard, Rudi Balling, Ewan Birney, Andrew Blake, Erik Bongcam-Rudloff, Anthony J. Brookes, Gianni Cesareni, Christina Chandras, Janan T. Eppig, Paul Flicek, Georgios V. Gkoutos, Simon Greenaway, Michael Gruenberger, Jean-Karim Hériché, Andrew Lyall, Ann-Marie Mallon, Dawn Muddyman, Florian Reisinger, Martin Ringwald, Nadia A. Rosenthal, Klaus Schughart, Morris A. Swertz, Gudmundur A. Thorisson, Michael Zouberakis, John M. Hancock:
Finding and sharing: new approaches to registries of databases and services for the biomedical sciences. Database J. Biol. Databases Curation 2010 (2010) - [j5]Michael Zouberakis, Christina Chandras, Morris A. Swertz, Damian Smedley, Michael Gruenberger, Jonathan B. L. Bard, Klaus Schughart, Nadia A. Rosenthal, John M. Hancock, Paul N. Schofield, George Kollias, Vassilis Aidinis:
Mouse Resource Browser - a database of mouse databases. Database J. Biol. Databases Curation 2010 (2010)
2000 – 2009
- 2009
- [j4]Christina Chandras, Thomas Weaver, Michael Zouberakis, Damian Smedley, Klaus Schughart, Nadia A. Rosenthal, John M. Hancock, George Kollias, Paul N. Schofield, Vassilis Aidinis:
Models for financial sustainability of biological databases and resources. Database J. Biol. Databases Curation 2009 (2009) - 2008
- [j3]Damian Smedley, Morris A. Swertz, Katy Wolstencroft, Glenn Proctor, Michael Zouberakis, Jonathan B. L. Bard, John M. Hancock, Paul N. Schofield:
Solutions for data integration in functional genomics: a critical assessment and case study. Briefings Bioinform. 9(6): 532-544 (2008) - [c4]Christina Chandras, Tom Weaver, Michael Zouberakis, John M. Hancock, Paul N. Schofield, Vassilis Aidinis:
Digital preservation - financial sustainability of biological data and material resources. BIBE 2008: 1-6 - [c3]John M. Hancock, Paul N. Schofield, Christina Chandras, Michael Zouberakis, Vassilis Aidinis, Damian Smedley, Nadia A. Rosenthal, Klaus Schughart:
CASIMIR: Coordination and Sustainability of International Mouse Informatics Resources. BIBE 2008: 1-6 - [c2]Morris A. Swertz, Damian Smedley, Katy Wolstencroft, Rudi Alberts, Michael Zouberakis, Vassilis Aidinis, Klaus Schughart, Paul N. Schofield, Ritsert C. Jansen:
Towards dynamic database infrastructures for mouse genetics. BIBE 2008: 1-7 - [c1]Michael Zouberakis, Christina Chandras, John M. Hancock, Paul N. Schofield, Vassilis Aidinis:
The Mouse Resource Browser (MRB) - A near-complete registry of mouse resources. BIBE 2008: 1-5 - [p1]Paul N. Schofield, Björn Rozell, Georgios V. Gkoutos:
Towards a Disease Ontology. Anatomy Ontologies for Bioinformatics 2008: 119-130 - 2007
- [j2]Kai Salomaa, Paul N. Schofield:
State Complexity of Additive Weighted Finite Automata. Int. J. Found. Comput. Sci. 18(6): 1407-1416 (2007) - 2004
- [j1]Paul N. Schofield, Jonathan B. L. Bard, Catherine Booth, Jacques Boniver, Vincenzo Covelli, Philippe Delvenne, Michele Ellender, Wilhelm Engstrom, Wolfgang Goessner, Michael Gruenberger, Heinz Hoefler, John Hopewell, Mariatheresa Mancuso, Carmel Mothersill, Christopher S. Potten, Leticia Quintanilla-Fend, Björn Rozell, Hannu Sariola, John P. Sundberg, Andrew Ward:
Pathbase: a database of mutant mouse pathology. Nucleic Acids Res. 32(Database-Issue): 512-515 (2004)
Coauthor Index
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