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2020 – today
- 2020
[j13]Leyla J. García
, Erick Antezana, Alexander García Castro, Evan Bolton, Rafael C. Jiménez, Pjotr Prins, Juan M. Banda, Toshiaki Katayama:
Ten simple rules to run a successful BioHackathon. PLoS Comput. Biol. 16(5) (2020)- [i3]Rutger A. Vos, Toshiaki Katayama, Hiroyuki Mishima, Shin Kawano, Shuichi Kawashima, Jin-Dong Kim, Yuki Moriya, Toshiaki Tokimatsu, Atsuko Yamaguchi, Yasunori Yamamoto, Hongyan Wu, Peter Amstutz, Erick Antezana, Nobuyuki P. Aoki, Kazuharu Arakawa, Jerven T. Bolleman, Evan E. Bolton, Raoul Jean Pierre Bonnal, Hidemasa Bono, Kees Burger, Hirokazu Chiba, Kevin Bretonnel Cohen, Eric W. Deutsch, Jesualdo Tomás Fernández-Breis, Gang Fu, Takatomo Fujisawa, Atsushi Fukushima, Alexander García Castro, Naohisa Goto, Tudor Groza, Colin Hercus, Robert Hoehndorf, Kotone Itaya, Nick S. Juty, Takeshi Kawashima, Jee-Hyub Kim, Akira R. Kinjo, Masaaki Kotera, Kouji Kozaki, Sadahiro Kumagai, Tatsuya Kushida, Thomas Lütteke, Masaaki Matsubara, Joe Miyamoto, Attayeb Mohsen, Hiroshi Mori, Yuki Naito, Takeru Nakazato, Jeremy NguyenXuan, Kozo Nishida, Naoki Nishida, Hiroyo Nishide, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Benedict Paten, Jean-Luc Perret, Philip Prathipati, Pjotr Prins, Núria Queralt-Rosinach, Daisuke Shinmachi, Shinya Suzuki, Tsuyosi Tabata, Terue Takatsuki, Kieron R. Taylor, Mark Thompson, Ikuo Uchiyama, Bruno Vieira, Chih-Hsuan Wei, Mark D. Wilkinson, Issaku Yamada, Ryota Yamanaka, Kazutoshi Yoshitake, Akiyasu C. Yoshizawa, Michel Dumontier, Kenjiro Kosaki, Toshihisa Takagi:
BioHackathon 2015: Semantics of data for life sciences and reproducible research. F1000Research 9: 136 (2020)
2010 – 2019
- 2017
- [j12]Olga L. Giraldo, Alexander García Castro, Federico López, Óscar Corcho:
Using semantics for representing experimental protocols. J. Biomed. Semant. 8(1): 52:1-52:15 (2017) - [c22]Alexander García Castro, Erick Antezana, Jael García, Olga L. Giraldo, Pjotr Prins, Rutger A. Vos:
Shō-coin: A Knowledge-Based Economy for Life Sciences. SWAT4LS 2017 - [c21]Leyla J. García, Olga L. Giraldo, Alexander García Castro, Michel Dumontier, Bioschemas Community:
Bioschemas: schema.org for the Life Sciences. SWAT4LS 2017 - 2015
- [j11]Andrés García-Silva, Leyla Jael García Castro, Alexander García Castro, Óscar Corcho:
Building Domain Ontologies Out of Folksonomies and Linked Data. Int. J. Artif. Intell. Tools 24(2): 1540014:1-1540014:22 (2015) - [j10]Leyla Jael García Castro, Rafael Berlanga Llavori, Alexander García Castro:
In the pursuit of a semantic similarity metric based on UMLS annotations for articles in PubMed Central Open Access. J. Biomed. Informatics 57: 204-218 (2015) - [c20]Olga L. Giraldo, Alexander García Castro, Óscar Corcho:
Using Semantics and NLP in the SMART Protocols Repository. ICBO 2015 - [c19]Alexander García Castro, Isabel Barth, Erich Weichselgartner:
KOBPSY, a knowledge base in psychology and behavioral sciences. I-KNOW 2015: 29:1-29:4 - [c18]Olga L. Giraldo, Alexander García Castro, Óscar Corcho, Jose Figueredo:
Using Semantics and NLP in Experimental Protocols. SWAT4LS 2015: 132-141 - [e5]Axel Polleres, Alexander García Castro, V. Richard Benjamins:
Proceedings of the Industry Track at the International Semantic Web Conference 2014 Co-located with the 13th International Semantic Web Conference (ISWC 2014), Riva del Garda, Italy, October 19-23, 2014. CEUR Workshop Proceedings 1383, CEUR-WS.org 2015 [contents] - [i2]Alexander García Castro, Janna Hastings, Robert Stevens, Erich Weichselgartner:
Digital Scholarship and Open Science in Psychology and the Behavioral Sciences (Dagstuhl Perpectives Workshop 15302). Dagstuhl Reports 5(7): 42-68 (2015) - 2014
- [c17]Olga L. Giraldo, Alexander García Castro, Óscar Corcho:
SMART Protocols: SeMAntic RepresenTation for Experimental Protocols. LISC@ISWC 2014: 36-47 - [c16]Andrés García-Silva, Leyla Jael García Castro, Alexander García Castro, Óscar Corcho:
Social Tags and Linked Data for Ontology Development: A Case Study in the Financial Domain. WIMS 2014: 32:1-32:10 - [e4]Alexander García Castro, Christoph Lange, Phillip W. Lord, Robert Stevens:
Proceedings of the 4th Workshop on Semantic Publishing co-located with the 11th Extended Semantic Web Conference (ESWC 2014), Anissaras, Greece, May 25th, 2014. CEUR Workshop Proceedings 1155, CEUR-WS.org 2014 [contents] - [i1]Manuel Corpas, Rafael C. Jiménez, Seth Carbon, Alexander García Castro, Leyla Jael Castro, Tatyana Goldberg, John Gómez, Alex Kalderimis, Suzanna E. Lewis, Ian Mulvany, Aleksandra Pawlik, Francis Rowland, Gustavo A. Salazar, Fabian Schreiber, Ian Sillitoe, William Spooner, Anil S. Thanki, Jose M. Villaveces, Guy Yachdav, Henning Hermjakob:
BioJS: an open source standard for biological visualisation - its status in 2014. F1000Research 3: 55 (2014) - 2013
- [j9]John Gómez, Leyla J. García, Gustavo A. Salazar, Jose M. Villaveces, Swanand P. Gore, Alexander García Castro, Maria Jesus Martin, Guillaume Launay, Rafael Alcántara, Noemi del-Toro, Marine Dumousseau, Sandra E. Orchard, Sameer Velankar, Henning Hermjakob, Chenggong Zong, Peipei Ping, Manuel Corpas, Rafael C. Jiménez:
BioJS: an open source JavaScript framework for biological data visualization. Bioinform. 29(8): 1103-1104 (2013) - [j8]Leyla Jael García Castro, Casey McLaughlin, Alexander García Castro:
Biotea: RDFizing PubMed Central in support for the paper as an interface to the Web of Data. J. Biomed. Semant. 4(S-1): S5 (2013) - [c15]Leyla Jael García Castro, Rafael Berlanga Llavori, Dietrich Rebholz-Schuhmann, Alexander García Castro:
Connections across Scientific Publications based on Semantic Annotations. SePublica 2013: 51-62 - [c14]Nestor Velasco Bermeo, Miguel González-Mendoza, Alexander García Castro:
Semantic Representation of CAD Models Based on the IGES Standard. MICAI (1) 2013: 157-168 - [e3]Alexander García Castro, Christoph Lange, Phillip W. Lord, Robert Stevens:
Proceedings of the 3rd Workshop on Semantic Publishing, Montpellier, France, May 26th, 2013. CEUR Workshop Proceedings 994, CEUR-WS.org 2013 [contents] - 2012
- [c13]Leyla Jael García Castro, Olga L. Giraldo, Alexander García Castro:
Using annotations to model discourse: an extension to the Annotation Ontology. SePublica@ESWC 2012: 13-22 - [c12]Nestor Velasco Bermeo, Miguel González-Mendoza, Alexander García Castro, Irais Heras Dueñas:
Towards the Creation of Semantic Models Based on Computer-Aided Designs. MICAI (1) 2012: 298-310 - [c11]Leyla Jael García Castro, Alexander García Castro, John Gómez:
Conceptual Exploration of Documents and Digital Libraries in the Biomedical Domain. SWAT4LS 2012 - [e2]Alexander García Castro, Christoph Lange, Frank van Harmelen, Benjamin M. Good:
Proceedings of the 2nd Workshop on Semantic Publishing, co-located with the 9th Extended Semantic Web Conference, SePublica@ESWC 2012, Hersonissos, Crete, Greece, May 28, 2012. CEUR Workshop Proceedings 903, CEUR-WS.org 2012 [contents] - 2011
- [j7]Jose M. Villaveces, Rafael C. Jiménez, Leyla J. García, Gustavo A. Salazar, Bernat Gel, Nicola J. Mulder, Maria Jesus Martin, Alexander García Castro, Henning Hermjakob:
Dasty3, a WEB framework for DAS. Bioinform. 27(18): 2616-2617 (2011) - [j6]Gustavo A. Salazar, Rafael C. Jiménez, Alexander García Castro, Henning Hermjakob, Nicola J. Mulder, Edwin H. Blake:
DAS Writeback: A Collaborative Annotation System. BMC Bioinform. 12: 143 (2011) - [c10]Alexander García Castro, Olga L. Giraldo, Leyla J. García:
Annotating Experimental Records Using Ontologies. ICBO 2011 - [c9]Oliver Kutz, Till Mossakowski, Janna Hastings, Alexander García Castro, Aleksandra Sojic:
Hyperontology for the Biomedical Ontologist: A Sketch and Some Examples. ICBO 2011 - [c8]Alexander García Castro, Leyla Jael García Castro:
A translational model for representing research articles. SWAT4LS 2011: 20-21 - [c7]Leyla Jael García Castro, Alexander García Castro:
Tagsty: augmented knowledge from community-based annotations on protein sequences. SWAT4LS 2011: 22-23 - [e1]Alexander García Castro, Christoph Lange, Evan Sandhaus, Anita de Waard:
Proceedings of the 1st Workshop on Semantic Publishing 2011, Hersonissos, Crete, Greece, May 30, 2011. CEUR Workshop Proceedings 721, CEUR-WS.org 2011 [contents] - 2010
- [j5]Alexander García Castro, Alberto Labarga, Leyla J. García, Olga L. Giraldo, César Montaña, John A. Bateman:
Semantic Web and Social Web heading towards Living Documents in the Life Sciences. J. Web Semant. 8(2-3): 155-162 (2010) - [c6]Leyla Jael García Castro, Martin Hepp, Alexander García Castro:
TagSorting: A Tagging Environment for Collaboratively Building Ontologies. EKAW 2010: 462-472 - [c5]Leyla Jael García Castro, Olga L. Giraldo, Alexander García Castro:
Using the Annotation Ontology in Semantic Digital Libraries. ISWC (Posters & Demos) 2010 - [p1]Alexander García Castro, Kieran O'Neill, Leyla Jael García Castro, Phillip W. Lord, Robert Stevens, Óscar Corcho, Frank Gibson:
Developing Ontologies within Decentralised Settings. Semantic e-Science 2010: 99-139
2000 – 2009
- 2009
- [c4]Alexander García Castro, Leyla Jael García Castro, Alberto Labarga, Olga L. Giraldo, César Montaña, Kieran O'Neill, John A. Bateman:
Annotating Atomic Components of Papers in Digital Libraries: The Semantic and Social Web Heading towards a Living Document Supporting eSciences. DEXA 2009: 287-301 - [c3]Leyla Jael García Castro, Martin Hepp, Alexander García Castro:
Tags4Tags: Using Tagging to Consolidate Tags. DEXA 2009: 619-628 - 2008
- [j4]Rafael C. Jiménez, Antony F. Quinn, Alexander García Castro, Alberto Labarga, Kieran O'Neill, Fernando Martinez, Gustavo A. Salazar, Henning Hermjakob:
Dasty2, an Ajax protein DAS client. Bioinform. 24(18): 2119-2121 (2008) - [j3]Kieran O'Neill, Alexander García Castro, Anita Schwegmann, Rafael C. Jiménez, Dan Jacobson, Henning Hermjakob:
OntoDas - a tool for facilitating the construction of complex queries to the Gene Ontology. BMC Bioinform. 9 (2008) - [c2]Alexander García Castro, Angela Norena, Andres Betancourt, Leyla J. García:
CMAPS Supporting the Development of OWL Ontologies. ISWC (Posters & Demos) 2008 - [c1]Dionysios D. Kehagias, Alexander García Castro, Dimitrios Tzovaras, Dimitrios Giakoumis:
A Semantic Web Service Alignment Tool. ISWC (Posters & Demos) 2008 - 2006
- [j2]Alexander García Castro, Philippe Rocca-Serra, Robert Stevens, Chris F. Taylor, Karim Nashar, Mark A. Ragan, Susanna-Assunta Sansone:
The use of concept maps during knowledge elicitation in ontology development processes - the nutrigenomics use case. BMC Bioinform. 7: 267 (2006) - 2005
- [j1]Alexander García Castro, Samuel Thoraval, Leyla J. García, Mark A. Ragan:
Workflows in bioinformatics: meta-analysis and prototype implementation of a workflow generator. BMC Bioinform. 6: 87 (2005)
Coauthor Index
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