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ORCIDThomas Walter 0003
Person information
- affiliation: MINES ParisTech / Institut Curie, Centre for Computational Biology (CBIO), France
- affiliation (former): EMBL Heidelberg, Germany
Other persons with the same name
- Thomas Walter — disambiguation page
- Thomas Walter 0001 — DOCOMO Euro-Labs, Munich, Germany
- Thomas Walter 0002 — Eberhard Karls University of Tübingen, Germany
- Thomas Walter 0004 — University of Kaiserslautern, Germany
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Journal Articles
- 2020
[j8]Joseph Boyd, Alice Pinheiro, Elaine Del Nery
, Fabien Reyal, Thomas Walter:
Domain-invariant features for mechanism of action prediction in a multi-cell-line drug screen. Bioinform. 36(5): 1607-1613 (2020)- 2019
- [j7]Peter Naylor, Marick Lae, Fabien Reyal, Thomas Walter:
Segmentation of Nuclei in Histopathology Images by Deep Regression of the Distance Map. IEEE Trans. Medical Imaging 38(2): 448-459 (2019) - 2015
- [j6]Alice Schoenauer Sebag, Sandra Plancade, Céline Raulet-Tomkiewicz, Robert Barouki, Jean-Philippe Vert, Thomas Walter:
A generic methodological framework for studying single cell motility in high-throughput time-lapse data. Bioinform. 31(12): 320-328 (2015) - [j5]Mitko Veta, Paul J. van Diest, Stefan M. Willems, Haibo Wang, Anant Madabhushi, Angel Cruz-Roa, Fabio A. González, Anders Boesen Lindbo Larsen, Jacob S. Vestergaard, Anders B. Dahl, Dan C. Ciresan, Jürgen Schmidhuber, Alessandro Giusti, Luca Maria Gambardella, Faik Boray Tek, Thomas Walter, Ching-Wei Wang, Satoshi Kondo, Bogdan J. Matuszewski, Frédéric Precioso, Violet Snell, Josef Kittler, Teófilo Emídio de Campos, Adnan Mujahid Khan, Nasir M. Rajpoot, Evdokia Arkoumani, Miangela M. Lacle, Max A. Viergever, Josien P. W. Pluim:
Assessment of algorithms for mitosis detection in breast cancer histopathology images. Medical Image Anal. 20(1): 237-248 (2015) - [j4]Vaïa Machairas, Matthieu Faessel, David Cárdenas-Peña, Théodore Chabardès, Thomas Walter, Etienne Decencière:
Waterpixels. IEEE Trans. Image Process. 24(11): 3707-3716 (2015) - 2013
- [j3]Grégoire Pau, Thomas Walter, Beate Neumann, Jean-Karim Hériché, Jan Ellenberg, Wolfgang Huber:
Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay. BMC Bioinform. 14: 308 (2013) - 2007
- [j2]Thomas Walter, Pascale Massin, Ali Erginay, Richard Ordonez, Clotilde Jeulin, Jean-Claude Klein:
Automatic detection of microaneurysms in color fundus images. Medical Image Anal. 11(6): 555-566 (2007) - 2002
- [j1]Thomas Walter, Jean-Claude Klein, Pascale Massin, Ali Erginay:
A Contribution of Image Processing to the Diagnosis of Diabetic Retinopathy - Detection of Exudates in Color Fundus Images of the Human Retina. IEEE Trans. Medical Imaging 21(10): 1236-1243 (2002)
Conference and Workshop Papers
- 2023
- [c17]Tristan Lazard, Marvin Lerousseau, Etienne Decencière, Thomas Walter:
Giga-SSL: Self-Supervised Learning for Gigapixel Images. CVPR Workshops 2023: 4305-4314 - [c16]Mélanie Lubrano, Yaëlle Bellahsen-Harrar, Rutger R. H. Fick, Cécile Badoual, Thomas Walter:
Simple and Efficient Confidence Score for Grading Whole Slide Images. MIDL 2023: 151-169 - 2022
- [c15]Mélanie Lubrano, Tristan Lazard, Guillaume Balezo, Yaëlle Bellahsen-Harrar, Cécile Badoual, Sylvain Berlemont, Thomas Walter:
Automatic Grading of Cervical Biopsies by Combining Full and Self-supervision. ECCV Workshops (7) 2022: 408-423 - [c14]Thomas Bonte, Maxence Philbert, Emeline Coleno, Edouard Bertrand, Arthur Imbert, Thomas Walter:
Learning with Minimal Effort: Leveraging in Silico Labeling for Cell and Nucleus Segmentation. ECCV Workshops (4) 2022: 423-436 - [c13]Arthur Imbert, Florian Müller, Thomas Walter:
PointFISH: Learning Point Cloud Representations for RNA Localization Patterns. ECCV Workshops (4) 2022: 487-502 - 2020
- [c12]Joseph Boyd, Zelia Gouveia, Franck Perez, Thomas Walter:
Experimentally-Generated Ground Truth for Detecting Cell Types in an Image-Based Immunotherapy Screen. ISBI 2020: 886-890 - 2019
- [c11]Peter Naylor, Joseph Boyd, Marick Laé, Fabien Reyal, Thomas Walter:
Predicting Residual Cancer Burden In A Triple Negative Breast Cancer Cohort. ISBI 2019: 933-937 - [c10]Rémy Dubois, Arthur Imbert, Aubin Samacoïts, Marion Peter, Edouard Bertrand, Florian Müller, Thomas Walter:
A Deep Learning Approach To Identify MRNA Localization Patterns. ISBI 2019: 1386-1390 - 2018
- [c9]Joseph Boyd, Alice Pinhiero, Elaine Del Nery, Fabien Reyal, Thomas Walter:
Analysing double-strand breaks in cultured cells for drug screening applications by causal inference. ISBI 2018: 445-448 - 2017
- [c8]Peter Naylor, Marick Lae, Fabien Reyal, Thomas Walter:
Nuclei segmentation in histopathology images using deep neural networks. ISBI 2017: 933-936 - 2016
- [c7]Vaïa Machairas, Thérèse Baldeweck, Thomas Walter, Etienne Decencière:
New general features based on superpixels for image segmentation learning. ISBI 2016: 1409-1413 - 2015
- [c6]Alice Schoenauer Sebag, Sandra Plancade, Céline Raulet-Tomkiewicz, Robert Barouki, Jean-Philippe Vert, Thomas Walter:
Infering an ontology of single cell motions from high-throughput microscopy data. ISBI 2015: 160-163 - [c5]Vaïa Machairas, Etienne Decencière, Thomas Walter:
Spatial Repulsion Between Markers Improves Watershed Performance. ISMM 2015: 194-202 - 2014
- [c4]Vaïa Machairas, Etienne Decencière, Thomas Walter:
Waterpixels: Superpixels based on the watershed transformation. ICIP 2014: 4343-4347 - 2008
- [c3]Thomas Walter, Michael Held, Beate Neumann, Jean-Karim Hériché, Christian Conrad, Rainer Pepperkok, Jan Ellenberg:
A genome wide RNAI screen by time lapse microscopy in order to identify mitotic genes - computational aspects and challenges. ISBI 2008: 328-331 - 2002
- [c2]Thomas Walter, Jean-Claude Klein:
Automatic Detection of Microaneurysms in Color Fundus Images of the Human Retina by Means of the Bounding Box Closing. ISMDA 2002: 210-220 - 2001
- [c1]Thomas Walter, Jean-Claude Klein:
Segmentation of Color Fundus Images of the Human Retina: Detection of the Optic Disc and the Vascular Tree Using Morphological Techniques. ISMDA 2001: 282-287
Data and Artifacts
- 2022
- [d1]Peter Naylor, Marick Laé, Fabien Reyal, Thomas Walter:
Segmentation of Nuclei in Histopathology Images by deep regression of the distance map. IEEE DataPort, 2022
Informal and Other Publications
- 2023
- [i5]Thomas Bonte, Maxence Philbert, Emeline Coleno, Edouard Bertrand, Arthur Imbert, Thomas Walter:
Learning with minimal effort: leveraging in silico labeling for cell and nucleus segmentation. CoRR abs/2301.03914 (2023) - [i4]Arthur Imbert, Florian Mueller, Thomas Walter:
PointFISH - learning point cloud representations for RNA localization patterns. CoRR abs/2302.10923 (2023) - [i3]Mélanie Lubrano, Yaëlle Bellahsen-Harrar, Rutger Fick, Cécile Badoual, Thomas Walter:
Simple and Efficient Confidence Score for Grading Whole Slide Images. CoRR abs/2303.04604 (2023) - 2022
- [i2]Tristan Lazard, Marvin Lerousseau, Etienne Decencière, Thomas Walter:
Giga-SSL: Self-Supervised Learning for Gigapixel Images. CoRR abs/2212.03273 (2022) - 2014
- [i1]Mitko Veta, Paul J. van Diest, Stefan M. Willems, Haibo Wang, Anant Madabhushi, Angel Cruz-Roa, Fabio A. González, Anders Boesen Lindbo Larsen, Jacob S. Vestergaard, Anders B. Dahl, Dan C. Ciresan, Jürgen Schmidhuber, Alessandro Giusti, Luca Maria Gambardella, Faik Boray Tek, Thomas Walter, Ching-Wei Wang, Satoshi Kondo, Bogdan J. Matuszewski, Frédéric Precioso, Violet Snell, Josef Kittler, Teófilo Emídio de Campos, Adnan Mujahid Khan, Nasir M. Rajpoot, Evdokia Arkoumani, Miangela M. Lacle, Max A. Viergever, Josien P. W. Pluim:
Assessment of algorithms for mitosis detection in breast cancer histopathology images. CoRR abs/1411.5825 (2014)
Coauthor Index
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