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2020 – today
- 2024
[j31]Tzu-Hsien Yang
, Guan-Da Syu, Chien-Sheng Chen, Guan-Ru Chen, Song-En Jhong, Po-Heng Lin, Pei-Chun Lin, Yun-Cih Wang, Pramod Shah, Yan-Yuan Tseng, Wei-Sheng Wu:
BAPCP: A comprehensive and user-friendly web tool for identifying biomarkers from protein microarray technologies. Comput. Methods Programs Biomed. 254: 108260 (2024)- [j30]Tzu-Hsien Yang, Jhih-Cheng Chen, Yuan-Han Lee, Shang-Yi Lu, Sheng-Hang Wu, Fang-Yuan Chang, Yan-Cheng Huang, Mei-Hsien Lee, Yan-Yuan Tseng, Wei-Sheng Wu:
Identifying Human miRNA Target Sites via Learning the Interaction Patterns between miRNA and mRNA Segments. J. Chem. Inf. Model. 64(7): 2445-2453 (2024) - 2022
- [j29]Tzu-Hsien Yang, Chia-Wei Hsu, Yan-Xiang Wang, Chien-Hung Yu, Jagat Rathod, Yan-Yuan Tseng, Wei-Sheng Wu:
YMLA: A comparative platform to carry out functional enrichment analysis for multiple gene lists in yeast. Comput. Biol. Medicine 151(Part): 106314 (2022) - 2021
- [j28]Tzu-Hsien Yang, Sheng-Cian Shiue, Kuan-Yu Chen, Yan Yuan Tseng, Wei-Sheng Wu:
Identifying piRNA targets on mRNAs in C. elegans using a deep multi-head attention network. BMC Bioinform. 22(1): 503 (2021) - [j27]Wei-Sheng Wu, Yi-Hong Tsao, Sheng-Cian Shiue, Ting-Yu Chen, Yan Yuan Tseng, Joseph T. Tseng:
A tool for analyzing and visualizing ribo-seq data at the isoform level. BMC Bioinform. 22-S(10): 271 (2021) - 2020
- [j26]Wei-Sheng Wu, Lai-Ji Wang, Han-Chen Yen, Yan Yuan Tseng:
YQFC: a web tool to compare quantitative biological features between two yeast gene lists. Database J. Biol. Databases Curation 2020 (2020)
2010 – 2019
- 2019
- [j25]Wei-Sheng Wu, Jordan S. Brown, Tsung-Te Chen, Yu-Han Chu, Wei-Che Huang, Shikui Tu, Heng-Chi Lee:
piRTarBase: a database of piRNA targeting sites and their roles in gene regulation. Nucleic Acids Res. 47(Database-Issue): D181-D187 (2019) - 2018
- [j24]Wei-Sheng Wu, Yu-Xuan Jiang, Jer-Wei Chang, Yu-Han Chu, Yi-Hao Chiu, Yi-Hong Tsao, Torbjörn E. M. Nordling, Yan Yuan Tseng, Joseph T. Tseng:
HRPDviewer: human ribosome profiling data viewer. Database J. Biol. Databases Curation 2018: bay074 (2018) - [j23]Wei-Sheng Wu, Hao-Ping Tu, Yu-Han Chu, Torbjörn E. M. Nordling, Yan Yuan Tseng, Hung-Jiun Liaw:
YHMI: a web tool to identify histone modifications and histone/chromatin regulators from a gene list in yeast. Database J. Biol. Databases Curation 2018: bay116 (2018) - [j22]Wei-Sheng Wu, Wei-Che Huang, Jordan S. Brown, Donglei Zhang, Xiaoyan Song, Hao Chen, Shikui Tu, Zhiping Weng, Heng-Chi Lee:
pirScan: a webserver to predict piRNA targeting sites and to avoid transgene silencing in C. elegans. Nucleic Acids Res. 46(Webserver-Issue): W43-W48 (2018) - 2017
- [j21]Wei-Sheng Wu, Pin-Han Chen, Tsung-Te Chen, Yan Yuan Tseng:
YGMD: a repository for yeast cooperative transcription factor sets and their target gene modules. Database J. Biol. Databases Curation 2017: bax085 (2017) - [j20]Wei-Sheng Wu, Meng-Jhun Jhou:
MVIAeval: a web tool for comprehensively evaluating the performance of a new missing value imputation algorithm. BMC Bioinform. 18(1): 31:1-31:10 (2017) - 2016
- [j19]Wei-Sheng Wu, Fu-Jou Lai, Bor-Wen Tu, Darby Tien-Hao Chang:
CoopTFD: a repository for predicted yeast cooperative transcription factor pairs. Database J. Biol. Databases Curation 2016 (2016) - 2015
- [j18]Fu-Jou Lai, Hong-Tsun Chang, Wei-Sheng Wu:
PCTFPeval: a web tool for benchmarking newly developed algorithms for predicting cooperative transcription factor pairs in yeast. BMC Bioinform. 16(S18): S2 (2015) - 2014
- [j17]Tzu-Hsien Yang, Chung-Ching Wang, Yu-Chao Wang, Wei-Sheng Wu:
YTRP: a repository for yeast transcriptional regulatory pathways. Database J. Biol. Databases Curation 2014 (2014) - [j16]Tzu-Hsien Yang, Hong-Tsun Chang, Eric S. L. Hsiao, Juo-Ling Sun, Chung-Ching Wang, Hsin-Yi Wu, Pao-Chi Liao, Wei-Sheng Wu:
iPhos: a toolkit to streamline the alkaline phosphatase-assisted comprehensive LC-MS phosphoproteome investigation. BMC Bioinform. 15(S-16): S10 (2014) - [j15]Tzu-Hsien Yang, Chung-Ching Wang, Po-Cheng Hung, Wei-Sheng Wu:
cisMEP: an integrated repository of genomic epigenetic profiles and cis-regulatory modules in Drosophila. BMC Syst. Biol. 8(S-4): S8 (2014) - [j14]Fu-Jou Lai, Hong-Tsun Chang, Yueh-Min Huang, Wei-Sheng Wu:
A comprehensive performance evaluation on the prediction results of existing cooperative transcription factors identification algorithms. BMC Syst. Biol. 8(S-4): S9 (2014) - [j13]Fu-Jou Lai, Mei-Huei Jhu, Chia-Chun Chiu, Yueh-Min Huang, Wei-Sheng Wu:
Identifying cooperative transcription factors in yeast using multiple data sources. BMC Syst. Biol. 8(S-5): S2 (2014) - [j12]Wei-Sheng Wu, Ming-Liang Wei, Chia-Ming Yeh, Darby Tien-Hao Chang:
A regulatory similarity measure using the location information of transcription factor binding sites in Saccharomyces cerevisiae. BMC Syst. Biol. 8(S-5): S9 (2014) - [j11]Benjamin D. Pope, Tyrone Ryba, Vishnu Dileep, Feng Yue, Wei-Sheng Wu, Olgert Denas, Daniel L. Vera, Yanli Wang, R. Scott Hansen, Theresa K. Canfield, Robert E. Thurman, Yong Cheng, Günhan Gülsoy, Jonathan H. Dennis, Michael P. Snyder, John A. Stamatoyannopoulos, James Taylor, Ross C. Hardison, Tamer Kahveci, Bing Ren, David M. Gilbert:
Topologically associating domains are stable units of replication-timing regulation Open. Nat. 515(7527): 402-405 (2014) - [c2]Chia-Chun Chiu, Wei-Sheng Wu:
IMDE: An easy-to-use web server for missing data estimation. ICCA 2014: 511-514 - 2013
- [j10]Sendren Sheng-Dong Xu, Hao Ying, Pablo Carbonell, Ching-Hung Lee, Wei-Sheng Wu:
Fuzzy Logic Applications in Control Theory and Systems Biology. Adv. Fuzzy Syst. 2013: 504728:1 (2013) - [j9]Hsiuying Wang, Chia-Chun Chiu, Yi-Ching Wu, Wei-Sheng Wu:
Shrinkage regression-based methods for microarray missing value imputation. BMC Syst. Biol. 7(S-6): S11 (2013) - [j8]Chia-Chun Chiu, Shih-Yao Chan, Chung-Ching Wang, Wei-Sheng Wu:
Missing value imputation for microarray data: a comprehensive comparison study and a web tool. BMC Syst. Biol. 7(S-6): S12 (2013) - [j7]Tzu-Hsien Yang, Wei-Sheng Wu:
Inferring functional transcription factor-gene binding pairs by integrating transcription factor binding data with transcription factor knockout data. BMC Syst. Biol. 7(S-6): S13 (2013) - 2012
- [j6]Tzu-Hsien Yang, Wei-Sheng Wu:
Identifying biologically interpretable transcription factor knockout targets by jointly analyzing the transcription factor knockout microarray and the ChIP-chip data. BMC Syst. Biol. 6: 102 (2012) - 2011
- [j5]Darby Tien-Hao Chang, Cheng-Yi Huang, Chi-Yeh Wu, Wei-Sheng Wu:
YPA: an integrated repository of promoter features in Saccharomyces cerevisiae. Nucleic Acids Res. 39(Database-Issue): 647-652 (2011)
2000 – 2009
- 2008
- [j4]Wei-Sheng Wu, Wen-Hsiung Li:
Systematic identification of yeast cell cycle transcription factors using multiple data sources. BMC Bioinform. 9 (2008) - 2007
- [j3]Wei-Sheng Wu, Wen-Hsiung Li, Bor-Sen Chen:
Identifying regulatory targets of cell cycle transcription factors using gene expression and ChIP-chip data. BMC Bioinform. 8 (2007) - 2006
- [j2]Wei-Sheng Wu, Wen-Hsiung Li, Bor-Sen Chen:
Computational reconstruction of transcriptional regulatory modules of the yeast cell cycle. BMC Bioinform. 7: 421 (2006) - [c1]Bor-Sen Chen, Wei-Sheng Wu:
Robust Filtering Circuit Design for Gene Networks under Intrinsic and Extrinsic Molecular Noises. SMC 2006: 3590-3595 - 2005
- [j1]Bor-Sen Chen, Yu-Chao Wang, Wei-Sheng Wu, Wen-Hsiung Li:
A new measure of the robustness of biochemical networks. Bioinform. 21(11): 2698-2705 (2005)
Coauthor Index
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