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Michael J. MacCoss
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2020 – today
- 2023
- [j8]Eric W. Deutsch, Nuno Bandeira, Yasset Pérez-Riverol
, Vagisha Sharma, Jeremy Carver, Luis Mendoza, Deepti Jaiswal Kundu, Shengbo Wang, Chakradhar Bandla, Selvakumar Kamatchinathan, Suresh Hewapathirana
, Benjamin S. Pullman, Julie Wertz, Zhi Sun, Shin Kawano, Shujiro Okuda
, Yu Watanabe, Brendan MacLean, Michael J. MacCoss, Yunping Zhu
, Yasushi Ishihama, Juan Antonio Vizcaíno
:
The ProteomeXchange consortium at 10 years: 2023 update. Nucleic Acids Res. 51(D1): 1539-1548 (2023) - 2020
- [j7]Tobias Rohde, Rita Chupalov, Nicholas Shulman, Vagisha Sharma, Josh Eckels, Brian S. Pratt, Michael J. MacCoss, Brendan MacLean:
Audit logs to enforce document integrity in Skyline and Panorama. Bioinform. 36(15): 4366-4368 (2020) - [j6]Eric W. Deutsch, Nuno Bandeira, Vagisha Sharma, Yasset Pérez-Riverol
, Jeremy Carver, Deepti Jaiswal Kundu, David García-Seisdedos
, Andrew F. Jarnuczak, Suresh Hewapathirana
, Benjamin S. Pullman, Julie Wertz, Zhi Sun, Shin Kawano
, Shujiro Okuda, Yu Watanabe, Henning Hermjakob
, Brendan MacLean, Michael J. MacCoss, Yunping Zhu, Yasushi Ishihama, Juan Antonio Vizcaíno
:
The ProteomeXchange consortium in 2020: enabling 'big data' approaches in proteomics. Nucleic Acids Res. 48(Database-Issue): D1145-D1152 (2020) - [j5]Behrouz Shamsaei, Szymon Chojnacki, Marcin Pilarczyk, Mehdi Fazel-Najafabadi, Wen Niu, Chuming Chen
, Karen Ross, Andrea Matlock, Jeremy Muhlich
, Somchai Chutipongtanate
, Jie Zheng, John Turner, Dusica Vidovic, Jake Jaffe, Michael J. MacCoss, Cathy Wu
, Ajay Pillai
, Avi Ma'ayan
, Stephan C. Schürer
, Michal Kouril, Mario Medvedovic
, Jarek Meller
:
piNET: a versatile web platform for downstream analysis and visualization of proteomics data. Nucleic Acids Res. 48(Webserver-Issue): W85-W93 (2020) - [i1]Shannon Joyner, Michael J. MacCoss, Christina Delimitrou, Hakim Weatherspoon:
Ripple: A Practical Declarative Programming Framework for Serverless Compute. CoRR abs/2001.00222 (2020)
2010 – 2019
- 2014
- [j4]Daniel Broudy, Trevor Killeen, Meena Choi
, Nicholas Shulman, Deepak R. Mani
, Susan E. Abbatiello, Deepak Mani, Rushdy Ahmad
, Alexandria K. Sahu, Birgit Schilling, Kaipo Tamura, Yuval Boss, Vagisha Sharma, Bradford W. Gibson, Steven A. Carr, Olga Vitek, Michael J. MacCoss, Brendan MacLean:
A framework for installable external tools in Skyline. Bioinform. 30(17): 2521-2523 (2014) - 2012
- [j3]Sean McIlwain, Michael Mathews, Michael Bereman, Edwin W. Rubel, Michael J. MacCoss, William Stafford Noble:
Estimating relative abundances of proteins from shotgun proteomics data. BMC Bioinform. 13: 308 (2012) - [j2]William Stafford Noble, Michael J. MacCoss:
Computational and Statistical Analysis of Protein Mass Spectrometry Data. PLoS Comput. Biol. 8(1) (2012) - 2010
- [j1]Brendan MacLean, Daniela M. Tomazela, Nicholas Shulman, Matthew Chambers, Gregory L. Finney, Barbara Frewen, Randall Kern, David L. Tabb
, Daniel C. Liebler
, Michael J. MacCoss:
Skyline: an open source document editor for creating and analyzing targeted proteomics experiments. Bioinform. 26(7): 966-968 (2010)
2000 – 2009
- 2008
- [c3]Aaron A. Klammer, Sheila M. Reynolds, Jeff A. Bilmes, Michael J. MacCoss, William Stafford Noble:
Modeling peptide fragmentation with dynamic Bayesian networks for peptide identification. ISMB 2008: 348-356 - 2007
- [c2]Aaron A. Klammer, Xianhua Yi, Michael J. MacCoss, William Stafford Noble:
Peptide Retention Time Prediction Yields Improved Tandem Mass Spectrum Identification for Diverse Chromatography Conditions. RECOMB 2007: 459-472 - 2005
- [c1]Aaron A. Klammer, Christine C. Wu, Michael J. MacCoss, William Stafford Noble:
Peptide Charge State Determination for Low-Resolution Tandem Mass Spectra. CSB 2005: 175-185
Coauthor Index
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