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Petr Holub
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Journal Articles
- 2024
- [j14]Maria A Rujano, Jan-Willem Boiten
, Christian Ohmann, Steve Canham, Sergio Contrino, Romain David, Jonathan Ewbank
, Claudia Filippone, Claire Connellan, Ilse Custers, Rick van Nuland, Michaela Theresia Mayrhofer, Petr Holub, Eva García Álvarez, Emmanuel Bacry, Nigel Hughes, Mallory Ann Freeberg
, Birgit Schaffhauser, Harald Wagener, Alex Sánchez-Pla
, Guido Bertolini, Maria Panagiotopoulou
:
Sharing sensitive data in life sciences: an overview of centralized and federated approaches. Briefings Bioinform. 25(4) (2024) - 2023
- [j13]Jirí Horák, Katarína Furmanová, Barbora Kozlíková, Tomás Brázdil, Petr Holub
, M. Kacenga, Matej Gallo
, R. Nenutil
, Jan Byska
, Vít Rusnák:
xOpat: eXplainable Open Pathology Analysis Tool. Comput. Graph. Forum 42(3): 63-73 (2023) - [j12]Romain David
, Audrey S. Richard
, Claire Connellan
, Katharina B. Lauer
, Maria Luisa Chiusano
, Carole A. Goble
, Martin Houde
, Isabel Kemmer
, Antje Keppler
, Philippe Lieutaud
, Christian Ohmann
, Maria Panagiotopoulou
, Sara Raza Khan
, Arina Rybina
, Stian Soiland-Reyes
, Charlotte Wit
, Rudolf Wittner
, Rafael Andrade Buono
, Sarah Arnaud Marsh
, Pauline Audergon
, Dylan Bonfils
, José María Carazo
, Remi Charrel
, Frederik Coppens
, Wolfgang Fecke
, Claudia Filippone
, Eva G. Alvarez
, Sheraz Gul
, Henning Hermjakob
, Katja Herzog
, Petr Holub
, Lukasz Kozera
, Allyson L. Lister
, José López-Coronado
, Bénédicte Madon
, Kurt Majcen
, William Martin
, Wolfgang Müller
, Elli Papadopoulou
, Christine M. A. Prat
, Paolo Romano
, Susanna-Assunta Sansone
, Gary Saunders
, Niklas Blomberg
, Jonathan Ewbank
:
Umbrella Data Management Plans to Integrate FAIR Data: Lessons From the ISIDORe and BY-COVID Consortia for Pandemic Preparedness. Data Sci. J. 22: 35 (2023) - 2021
- [j11]Athos Antoniades
, Maria Papaioannou, Apostolos Malatras, Gregory Papagregoriou
, Heimo Müller
, Petr Holub
, Constantinos Deltas, Christos N. Schizas:
Integration of Biobanks in National eHealth Ecosystems Facilitating Long-Term Longitudinal Clinical-Omics Studies and Citizens' Engagement in Research Through eHealthBioR. Frontiers Digit. Health 3: 628646 (2021) - 2020
- [j10]Peter Wittenburg
, Franciska de Jong
, Dieter Van Uytvanck, Massimo Cocco, Keith G. Jeffery, Michael Lautenschlager, Hannes Thiemann
, Margareta Hellström, Ari Asmi, Petr Holub:
State of FAIRness in ESFRI Projects. Data Intell. 2(1-2): 230-237 (2020) - 2019
- [j9]Sebastian Mate
, Marvin O. Kampf, Wolfgang Rödle, Stefan Kraus, Rumyana Proynova, Kaisa Silander, Lars Ebert, Martin Lablans, Christina Schüttler
, Christian Knell, Niina Eklund, Michael Hummel
, Petr Holub, Hans-Ulrich Prokosch:
Pan-European Data Harmonization for Biobanks in ADOPT BBMRI-ERIC. Appl. Clin. Inform. 10(04): 679-692 (2019) - 2018
- [j8]Pavel Troubil
, Hana Rudová
, Petr Holub:
Dynamic reconfiguration in multigroup multicast routing under uncertainty. J. Heuristics 24(3): 395-423 (2018) - 2017
- [j7]Chao Pang
, Fleur D. L. Kelpin, David van Enckevort
, Niina Eklund, Kaisa Silander, Dennis Hendriksen, Mark de Haan, Jonathan Jetten, Tommy de Boer, Bart Charbon, Petr Holub
, Hans L. Hillege, Morris A. Swertz
:
BiobankUniverse: automatic matchmaking between datasets for biobank data discovery and integration. Bioinform. 33(22): 3627-3634 (2017) - 2016
- [j6]Vít Rusnák, Lukás Rucka
, Petr Holub
:
Toward natural multi-user interaction in advanced collaborative display environments. Future Gener. Comput. Syst. 54: 313-325 (2016) - [j5]Milan Kabát, Vojtech David, Petr Holub
, Martin Pulec:
High-performance forward error correction: Enabling multi-gigabit flows and beyond on commodity GPU and CPU hardware in presence of packet loss. Future Gener. Comput. Syst. 54: 326-335 (2016) - 2013
- [j4]Petr Holub
, Martin Srom, Martin Pulec, Jiri Matela, Martin Jirman:
GPU-accelerated DXT and JPEG compression schemes for low-latency network transmissions of HD, 2K, and 4K video. Future Gener. Comput. Syst. 29(8): 1991-2006 (2013) - 2011
- [j3]Petr Holub
, Hana Rudová
, Milos Liska:
Data transfer planning with tree placement for collaborative environments. Constraints An Int. J. 16(3): 283-316 (2011) - 2006
- [j2]Petr Holub
, Ludek Matyska
, Milos Liska, Lukás Hejtmánek, Jirí Denemark, Tomás Rebok
, Andrei Hutanu, Ravi Paruchuri, Jan Radil
, Eva Hladká:
High-definition multimedia for multiparty low-latency interactive communication. Future Gener. Comput. Syst. 22(8): 856-861 (2006) - [j1]Andrei Hutanu, Gabrielle Allen, Stephen David Beck
, Petr Holub
, Hartmut Kaiser
, Archit Kulshrestha
, Milos Liska, Jon MacLaren, Ludek Matyska
, Ravi Paruchuri, Steffen Prohaska, Edward Seidel, Brygg Ullmer
, Shalini Venkataraman:
Distributed and collaborative visualization of large data sets using high-speed networks. Future Gener. Comput. Syst. 22(8): 1004-1010 (2006)
Conference and Workshop Papers
- 2022
- [c31]Francesca Frexia, Cecilia Mascia, Rudolf Wittner, Markus Plass, Heimo Müller, Jörg Geiger, Petr Holub:
The Common Provenance Model: Capturing Distributed Provenance in Life Sciences Processes. MIE 2022: 415-416 - 2021
- [c30]Elliot Fairweather, Rudolf Wittner
, Martin Chapman
, Petr Holub, Vasa Curcin:
Non-repudiable Provenance for Clinical Decision Support Systems. IPAW 2021: 165-182 - [c29]Rudolf Wittner
, Petr Holub
, Heimo Müller
, Jörg Geiger
, Carole A. Goble
, Stian Soiland-Reyes
, Luca Pireddu
, Francesca Frexia
, Cecilia Mascia
, Elliot Fairweather
, Jason R. Swedlow
, Josh Moore
, Caterina Strambio-De-Castillia
, David Grunwald
, Hiroki Nakae
:
ISO 23494: Biotechnology - Provenance Information Model for Biological Specimen And Data. IPAW 2021: 222-225 - 2017
- [c28]Rumyana Proynova, Diogo Alexandre, Martin Lablans, David van Enckevort, Sebastian Mate
, Niina Eklund, Kaisa Silander, Michael Hummel, Petr Holub, Frank Ückert:
A Decentralized IT Architecture for Locating and Negotiating Access to Biobank Samples. GMDS 2017: 75-79 - 2014
- [c27]Jiri Marek, Hana Rudová, Petr Holub
:
Local Search Heuristics for Media Streams Planning with Transcoding. NCA 2014: 167-170 - [c26]Pavel Troubil
, Hana Rudová, Petr Holub
:
Media Streams Planning with Uncertain Link Capacities. NCA 2014: 197-204 - 2013
- [c25]Jiri Marek, Petr Holub
, Hana Rudová
:
Local Search Heuristics for Media Streams Planning Problem. AINA 2013: 945-953 - [c24]Pavel Troubil
, Hana Rudová, Petr Holub
:
Media Streams Planning with Transcoding. NCA 2013: 41-48 - 2012
- [c23]Petr Slovák, Peter Novák, Pavel Troubil, Vít Rusnák, Petr Holub
, Erik C. Hofer:
Exploring Collaboration in Group-to-Group Videoconferencing. COOP 2012: 229-244 - [c22]Vít Rusnák, Lukás Rucka
, Petr Holub
:
Towards User-Aware Multi-touch Interaction Layer for Group Collaborative Systems. MEMICS 2012: 200-212 - [c21]Petr Holub
, Jiri Matela, Martin Pulec, Martin Srom:
UltraGrid: low-latency high-quality video transmissions on commodity hardware. ACM Multimedia 2012: 1457-1460 - 2011
- [c20]Petr Slovák, Peter Novák, Pavel Troubil
, Petr Holub
, Erik C. Hofer:
Exploring trust in group-to-group video-conferencing. CHI Extended Abstracts 2011: 1459-1464 - [c19]Jiri Matela, Vít Rusnák, Petr Holub
:
Efficient JPEG2000 EBCOT Context Modeling for Massively Parallel Architectures. DCC 2011: 423-432 - [c18]Jiri Matela, Martin Srom, Petr Holub
:
Low GPU Occupancy Approach to Fast Arithmetic Coding in JPEG2000. MEMICS 2011: 136-145 - 2010
- [c17]Petr Slovák, Pavel Troubil, Petr Holub
:
GColl: enhancing trust in flexible group-to-group videoconferencing. CHI Extended Abstracts 2010: 3607-3612 - [c16]Jiri Matela, Vít Rusnák, Petr Holub:
GPU-Based Sample-Parallel Context Modeling for EBCOT in JPEG2000. MEMICS 2010: 77-84 - [c15]Kenny Welshons, Patrick Dorn, Andrei Hutanu, Petr Holub
, John Vollbrecht, Gabrielle Allen:
Design and implementation of a production dynamically configurable testbed. TG 2010: 21:1-21:8 - 2009
- [c14]David Antos, Ludek Matyska
, Petr Holub
, Jirí Sitera:
VirtCloud: Virtualising Network for Grid Environments. AINA 2009: 876-883 - [c13]Petr Slovák, Pavel Troubil, Petr Holub
:
GColl group-to-group videoconferencing system: design and first experiences. CollaborateCom 2009: 1-9 - [c12]Michal Procházka, Petr Holub
, Eva Hladká:
jSon: Network of Active Elements with Peer-to-Peer Control Plane. ICN 2009: 208-213 - [c11]Milos Liska, Petr Holub
:
CoUniverse: Framework for Building Self-Organizing Collaborative Environments Using Extreme-Bandwidth Media Applications. ICN 2009: 259-265 - [c10]Petr Slovák, Pavel Troubil
, Petr Holub
:
GColl: A Flexible Videoconferencing Environment for Group-to-Group Interaction. INTERACT (2) 2009: 165-168 - 2008
- [c9]Milos Liska, Petr Holub
:
CoUniverse: Framework for Building Self-organizing Collaborative Environments Using Extreme-Bandwidth Media Applications. Euro-Par Workshops 2008: 339-351 - 2007
- [c8]Eva Hladká, Daniel Kouril, Michal Procházka, Ludek Matyska
, Petr Holub
:
Transparent security for collaborative environments. CollaborateCom 2007: 79-84 - [c7]Andrei Hutanu, Ravi Paruchuri, Daniel Eiland, Milos Liska, Petr Holub
, Steven R. Thorpe, Yufeng Xin
:
Uncompressed HD video for collaborative teaching - an experiment. CollaborateCom 2007: 253-261 - [c6]Petr Holub, Eva Hladká, Michal Procházka, Milos Liska:
Secure and Pervasive Collaborative Platform for Medical Applications. HealthGrid 2007: 229-238 - 2006
- [c5]Michal Procházka, Petr Holub, Eva Hladká:
Active Element Network with P2P Control Plane. IWSOS/EuroNGI 2006: 257 - 2005
- [c4]Petr Holub
, Eva Hladká, Ludek Matyska:
Scalability and Robustness of Virtual Multicast for Synchronous Multimedia Distribution. ICN (2) 2005: 876-883 - 2004
- [c3]Petr Holub
, Martin Kuba
, Ludek Matyska, Miroslav Ruda:
Grid Infrastructure Monitoring as Reliable Information Service. European Across Grids Conference 2004: 220-229 - [c2]Eva Hladká, Petr Holub
, Jirí Denemark:
User-Empowered Programmable Network Support for Collaborative Environment. ECUMN 2004: 367-376 - [c1]Petr Holub, Lukás Hejtmánek:
Distributed Encoding Environment based on Grids and IBP Infrastructure. TERENA Networking Conference 2004
Informal and Other Publications
- 2022
- [i4]Jan-Willem Boiten, Christian Ohmann, Ayodeji Adeniran, Steve Canham, Mónica Cano Abadia, Gauthier Chassang, Maria Luisa Chiusano, Romain David, Maddalena Fratelli, Philip Gribbon
, Petr Holub, Rebecca Ludwig, Michaela Theresia Mayrhofer, Mihaela Matei, Arshiya Merchant, Maria Panagiotopoulou, Luca Pireddu, Alex Sánchez-Pla, Irene Schlünder, George Tsamis, Harald Wagener:
EOSC-LIFE WP4 TOOLBOX: Toolbox for sharing of sensitive data - a concept description. CoRR abs/2207.14296 (2022) - 2020
- [i3]Elliot Fairweather, Rudolf Wittner, Martin Chapman, Petr Holub, Vasa Curcin:
Non-repudiable provenance for clinical decision support systems. CoRR abs/2006.11233 (2020) - 2019
- [i2]Isabelle Perseil, Petr Holub:
Towards a reconstructive methodology for building a provenance metamodel that fits the complex bioinformatics pipelines. RO 2019 - 2017
- [i1]Rafael C. Jiménez
, Mateusz Kuzak, Monther Alhamdoosh
, Michelle Barker
, Bérénice Batut
, Mikael Borg, Salvador Capella-Gutiérrez
, Neil P. Chue Hong, Martin Cook, Manuel Corpas
, Madison Flannery, Leyla J. García
, Josep Lluis Gelpí, Simon L. Gladman, Carole A. Goble, Montserrat González Ferreiro, Alejandra N. González-Beltrán
, Philippa C. Griffin, Björn A. Grüning
, Jonas Hagberg
, Petr Holub
, Rob W. W. Hooft
, Jon C. Ison
, Daniel S. Katz
, Brane Leskosek, Federico López-Gómez
, Luis J. Oliveira, David Mellor, Rowland Mosbergen, Nicola J. Mulder
, Yasset Pérez-Riverol
, Robert Pergl, Horst Pichler, Bernard J. Pope
, Ferran Sanz
, Maria Victoria Schneider, Victoria Stodden, Radoslaw Suchecki
, Radka Svobodová Vareková
, Harry-Anton Talvik
, Ilian T. Todorov, Andrew E. Treloar
, Sonika Tyagi
, Maarten van Gompel, Daniel Vaughan
, Allegra Via, Xiaochuan Wang, Nathan S. Watson-Haigh
, Steve Crouch:
Four simple recommendations to encourage best practices in research software. F1000Research 6: 876- (2017)
Coauthor Index
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last updated on 2024-08-13 20:48 CEST by the dblp team
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