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2020 – today
- 2023
[j10]Eric W. Deutsch, Nuno Bandeira, Yasset Pérez-Riverol
, Vagisha Sharma, Jeremy Carver, Luis Mendoza, Deepti Jaiswal Kundu, Shengbo Wang, Chakradhar Bandla, Selvakumar Kamatchinathan, Suresh Hewapathirana, Benjamin S. Pullman, Julie Wertz, Zhi Sun, Shin Kawano, Shujiro Okuda, Yu Watanabe, Brendan MacLean, Michael J. MacCoss, Yunping Zhu, Yasushi Ishihama, Juan Antonio Vizcaíno:
The ProteomeXchange consortium at 10 years: 2023 update. Nucleic Acids Res. 51(D1): 1539-1548 (2023)- 2022
- [c11]Narangerelt Batsoyol, Benjamin S. Pullman, Mingxun Wang, Nuno Bandeira, Steven Swanson:
P-Massive: A Real-Time Search Engine for a Multi-Terabyte Mass Spectrometry Database. SC 2022: 9:1-9:15 - 2021
- [j9]Yuliang Li, Jianguo Wang, Benjamin S. Pullman, Nuno Bandeira, Yannis Papakonstantinou:
Index-based, High-dimensional, Cosine Threshold Querying with Optimality Guarantees. Theory Comput. Syst. 65(1): 42-83 (2021) - 2020
- [j8]Eric W. Deutsch, Nuno Bandeira, Vagisha Sharma, Yasset Pérez-Riverol, Jeremy Carver, Deepti Jaiswal Kundu, David García-Seisdedos, Andrew F. Jarnuczak, Suresh Hewapathirana, Benjamin S. Pullman, Julie Wertz, Zhi Sun, Shin Kawano, Shujiro Okuda, Yu Watanabe, Henning Hermjakob, Brendan MacLean, Michael J. MacCoss, Yunping Zhu, Yasushi Ishihama, Juan Antonio Vizcaíno:
The ProteomeXchange consortium in 2020: enabling 'big data' approaches in proteomics. Nucleic Acids Res. 48(Database-Issue): D1145-D1152 (2020)
2010 – 2019
- 2019
- [c10]Yuliang Li, Jianguo Wang, Benjamin S. Pullman, Nuno Bandeira, Yannis Papakonstantinou:
Index-Based, High-Dimensional, Cosine Threshold Querying with Optimality Guarantees. ICDT 2019: 11:1-11:20 - [i2]Nuno Bandeira, Lennart Martens:
Computational Proteomics (Dagstuhl Seminar 19351). Dagstuhl Reports 9(8): 70-83 (2019) - 2018
- [i1]Yuliang Li, Jianguo Wang, Benjamin S. Pullman, Nuno Bandeira, Yannis Papakonstantinou:
Index-based, High-dimensional, Cosine Threshold Querying with Optimality Guarantees. CoRR abs/1812.07695 (2018) - 2017
- [j7]Eric W. Deutsch, Attila Csordas, Zhi Sun, Andrew F. Jarnuczak, Yasset Pérez-Riverol, Tobias Ternent, David S. Campbell, Manuel Bernal Llinares, Shujiro Okuda, Shin Kawano, Robert L. Moritz, Jeremy Carver, Mingxun Wang, Yasushi Ishihama, Nuno Bandeira, Henning Hermjakob, Juan Antonio Vizcaíno:
The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition. Nucleic Acids Res. 45(Database-Issue): D1100-D1106 (2017) - [c9]Nuno Bandeira:
Revealing deep proteome diversity with community-scale proteomics big data. CSBio 2017: 2 - 2016
- [c8]Sujun Li, Nuno Bandeira, XiaoFeng Wang, Haixu Tang:
On the Privacy Risks of Sharing Clinical Proteomics Data. CRI 2016 - 2015
- [j6]Adrian Guthals, Christina Boucher, Nuno Bandeira:
The Generating Function Approach for Peptide Identification in Spectral Networks. J. Comput. Biol. 22(5): 353-366 (2015) - 2014
- [c7]Adrian Guthals, Christina Boucher, Nuno Bandeira:
The Generating Function Approach for Peptide Identification in Spectral Networks. RECOMB 2014: 85-99 - 2013
- [c6]Mingxun Wang, Nuno Bandeira:
Spectral Library Generating Function for Assessing Spectrum-Spectrum Match Significance. RECOMB 2013: 287-288 - 2012
- [j5]Kyowon Jeong, Sangtae Kim, Nuno Bandeira:
False discovery rates in spectral identification. BMC Bioinform. 13(S-16): S2 (2012) - [j4]Banu Dost, Nuno Bandeira, Xiangqian Li, Zhouxin Shen, Steve Briggs, Vineet Bafna:
Accurate Mass Spectrometry Based Protein Quantification via Shared Peptides. J. Comput. Biol. 19(4): 337-348 (2012) - 2011
- [j3]Yoona Kim, Steven Bark, Vivian Hook, Nuno Bandeira:
NeuroPedia: neuropeptide database and spectral library. Bioinform. 27(19): 2772-2773 (2011) - 2010
- [c5]Kyowon Jeong, Sangtae Kim, Nuno Bandeira, Pavel A. Pevzner:
Gapped Spectral Dictionaries and Their Applications for Database Searches of Tandem Mass Spectra. RECOMB 2010: 208-232
2000 – 2009
- 2009
- [c4]Banu Dost, Nuno Bandeira, Xiangqian Li, Zhouxin Shen, Steve Briggs, Vineet Bafna:
Shared Peptides in Mass Spectrometry Based Protein Quantification. RECOMB 2009: 356-371 - 2008
- [c3]Nuno Bandeira, Jesper V. Olsen, Matthias Mann, Pavel A. Pevzner:
Multi-spectra peptide sequencing and its applications to multistage mass spectrometry. ISMB 2008: 416-423 - [c2]Nuno Bandeira, Julio Ng, Dario Meluzzi, Roger G. Linington, Pieter C. Dorrestein, Pavel A. Pevzner:
De Novo Sequencing of Nonribosomal Peptides. RECOMB 2008: 181-195 - 2007
- [j2]Nuno Bandeira, Dekel Tsur, Ari Frank, Pavel A. Pevzner:
Protein identification by spectral networks analysis. Proc. Natl. Acad. Sci. USA 104(15): 6140-6145 (2007) - 2006
- [c1]Nuno Bandeira, Dekel Tsur, Ari Frank, Pavel A. Pevzner:
A New Approach to Protein Identification. RECOMB 2006: 363-378
1980 – 1989
- 1983
- [j1]Nuno Bandeira, Ken Vaccaro, James A. Howard:
A Two's Complement Array Multiplier Using True Values of the Operands. IEEE Trans. Computers 32(8): 745-747 (1983)
Coauthor Index
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