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ORCIDPirooz Vakili
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2020 – today
- 2023
[j16]Nasser Hashemi, Boran Hao, Mikhail Ignatov, Ioannis Ch. Paschalidis, Pirooz Vakili, Sandor Vajda, Dima Kozakov
:
Improved prediction of MHC-peptide binding using protein language models. Frontiers Bioinform. 3 (2023)
2010 – 2019
- 2016
- [j15]Artem B. Mamonov, Mohammad Moghadasi, Hanieh Mirzaei, Shahrooz Zarbafian, Laurie E. Grove, Tanggis Bohnuud, Pirooz Vakili, Ioannis Ch. Paschalidis, Sandor Vajda, Dima Kozakov:
Focused grid-based resampling for protein docking and mapping. J. Comput. Chem. 37(11): 961-970 (2016) - 2015
- [j14]Mohammad Moghadasi, Hanieh Mirzaei, Artem B. Mamonov, Pirooz Vakili, Sandor Vajda, Ioannis Ch. Paschalidis, Dima Kozakov:
The Impact of Side-Chain Packing on Protein Docking Refinement. J. Chem. Inf. Model. 55(4): 872-881 (2015) - 2014
- [c21]Feng Nan, Mohammad Moghadasi, Pirooz Vakili, Sandor Vajda, Dima Kozakov, Ioannis Ch. Paschalidis:
A Subspace Semi-Definite programming-based Underestimation (SSDU) method for stochastic global optimization in protein docking. CDC 2014: 4623-4628 - [c20]Pirooz Vakili, Hanieh Mirzaei, Shahrooz Zarbafian, Ioannis Ch. Paschalidis, Dima Kozakov, Sandor Vajda:
Optimization on the space of rigid and flexible motions: An alternative manifold optimization approach. CDC 2014: 5825-5830 - 2013
- [c19]Mohammad Moghadasi, Dima Kozakov, Pirooz Vakili, Sandor Vajda, Ioannis Ch. Paschalidis:
A new distributed algorithm for side-chain positioning in the process of protein docking. CDC 2013: 739-744 - [c18]Hanieh Mirzaei, Elizabeth A. Villar, Scott E. Mottarella, Dmitri Beglov, Ioannis Ch. Paschalidis, Sandor Vajda, Dima Kozakov, Pirooz Vakili:
Flexible refinement of protein-ligand docking on manifolds. CDC 2013: 1392-1397 - 2012
- [c17]Mohammad Moghadasi, Dima Kozakov, Artem B. Mamonov, Pirooz Vakili, Sandor Vajda, Ioannis Ch. Paschalidis:
A message passing approach to Side Chain Positioning with applications in protein docking refinement. CDC 2012: 2310-2315 - [c16]Hanieh Mirzaei, Dima Kozakov, Dmitri Beglov, Ioannis Ch. Paschalidis, Sandor Vajda, Pirooz Vakili:
A new approach to rigid body minimization with application to molecular docking. CDC 2012: 2983-2988 - 2010
- [c15]Tarik Borogovac, Na Sun, Pirooz Vakili:
Control variates for sensitivity estimation. WSC 2010: 2629-2641 - [c14]Xiaojin Tang, Pirooz Vakili:
Importance sampling for parametric estimation. WSC 2010: 2666-2677
2000 – 2009
- 2008
- [j13]Yang Shen, Ioannis Ch. Paschalidis, Pirooz Vakili, Sandor Vajda:
Protein Docking by the Underestimation of Free Energy Funnels in the Space of Encounter Complexes. PLoS Comput. Biol. 4(10) (2008) - [c13]Gang Zhao, Pirooz Vakili:
Monotonicity and stratification. WSC 2008: 313-319 - [c12]Tarik Borogovac, Pirooz Vakili:
Control variate technique: A constructive approach. WSC 2008: 320-327 - [i1]Tarik Borogovac, Francis J. Alexander, Pirooz Vakili:
A Control Variate Approach for Improving Efficiency of Ensemble Monte Carlo. CoRR abs/0809.3187 (2008) - 2007
- [j12]Ioannis Ch. Paschalidis, Yang Shen, Pirooz Vakili, Sandor Vajda:
SDU: A Semidefinite Programming-Based Underestimation Method for Stochastic Global Optimization in Protein Docking. IEEE Trans. Autom. Control. 52(4): 664-676 (2007) - [c11]Yang Shen, Pirooz Vakili, Sandor Vajda, Ioannis Ch. Paschalidis:
Optimizing noisy funnel-like functions on the euclidean group with applications to protein docking. CDC 2007: 4545-4550 - [c10]Gang Zhao, Tarik Borogovac, Pirooz Vakili:
Efficient estimation of option price and price sensitivities via structured database Monte Carlo (SDMC). WSC 2007: 984-991 - 2006
- [c9]Ioannis Ch. Paschalidis, Yang Shen, Pirooz Vakili, Sandor Vajda:
Protein-protein docking with reduced potentials by exploiting multi-dimensional energy funnels. EMBC 2006: 5330-5333 - [c8]Gang Zhao, Yakun Zhou, Pirooz Vakili:
A new efficient simulation strategy for pricing path-dependent options. WSC 2006: 703-710 - 2005
- [j11]Leonardo P. Santiago, Pirooz Vakili:
On the Value of Flexibility in R&D Projects. Manag. Sci. 51(8): 1206-1218 (2005) - [c7]Ioannis Ch. Paschalidis, Yang Shen, Sandor Vajda, Pirooz Vakili:
A Semi-Definite programming-based Underestimation method for global optimization in molecular docking. CDC/ECC 2005: 3675-3680 - 2004
- [j10]Jian-Qiang Hu, Pirooz Vakili, Lei Huang:
Capacity and Production Managment in a Single Product Manufacturing System. Ann. Oper. Res. 125(1-4): 191-204 (2004) - [c6]Christos G. Cassandras, Meimei Deng, Jian-Qiang Hu, Christos G. Panayiotou, Pirooz Vakili, Chenming Zhao:
Development of a discrete event dynamic systems curriculum using a Web-based "real-time" simulated factory. ACC 2004: 1307 - [c5]Leonardo P. Santiago, Pirooz Vakili:
Value of flexibility in a finite horizon decision process. CDC 2004: 1319-1324 - 2001
- [c4]Yanfeng Wang, James R. Perkins, Pirooz Vakili, Anil Khurana:
Optimal allocation of heterogeneous resources: a control-theoretic approach. CDC 2001: 1953-1958
1990 – 1999
- 1999
- [j9]Simon Streltsov, Pirooz Vakili:
A Non-myopic Utility Function for Statistical Global Optimization Algorithms. J. Glob. Optim. 14(3): 283-298 (1999) - [j8]David A. Castañón, Simon Streltsov, Pirooz Vakili:
Optimality of index policies for a sequential sampling problem. IEEE Trans. Autom. Control. 44(1): 145-148 (1999) - 1996
- [j7]Simon Streltsov, Pirooz Vakili:
Variance reduction algorithms for parallel replicated simulation of uniformized Markov chains. Discret. Event Dyn. Syst. 6(2): 159-180 (1996) - [j6]Guo-Xiang Yu, Pirooz Vakili:
Periodic and chaotic dynamics of a switched-server system under corridor policies. IEEE Trans. Autom. Control. 41(4): 584-588 (1996) - 1995
- [c3]Pirooz Vakili:
Variance Reduction for Discrete Event Systems Driven by Poisson Processes. WSC 1995: 278-284 - 1994
- [j5]Pirooz Vakili, Guo-Xiang Yu:
Uniformization based sensitivity estimation for a class of discrete-event systems. Discret. Event Dyn. Syst. 4(2): 171-195 (1994) - [j4]Jian-Qiang Hu, Pirooz Vakili, Guo-Xiang Yu:
Optimality of hedging point policies in the production control of failure prone manufacturing systems. IEEE Trans. Autom. Control. 39(9): 1875-1880 (1994) - 1993
- [c2]Simon Streltsov, Pirooz Vakili:
Parallel replicated simulation of Markov chains: implementation and variance reduction. WSC 1993: 430-436 - 1992
- [j3]Yu-Chi Ho, R. S. Sreenivas, Pirooz Vakili:
Ordinal optimization of DEDS. Discret. Event Dyn. Syst. 2(1): 61-88 (1992) - [j2]Pirooz Vakili:
Massively Parallel and Distributed Simulation of a Class of Discrete Event Systems: A Different Perspective. ACM Trans. Model. Comput. Simul. 2(3): 214-238 (1992) - [c1]Paul Glasserman, Pirooz Vakili:
Correlation of Markov Chains Simulated in Parallel. WSC 1992: 475-482 - 1991
- [j1]Pirooz Vakili:
Using a standard clock technique for efficient simulation. Oper. Res. Lett. 10(8): 445-452 (1991)
Coauthor Index
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