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Michael Hackenberg
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2020 – today
- 2023
- [j22]Ernesto Aparicio-Puerta
, Pascal Hirsch
, Georges Pierre Schmartz
, Tobias Fehlmann
, Verena Keller
, Annika Engel
, Fabian Kern
, Michael Hackenberg, Andreas Keller
:
isomiRdb: microRNA expression at isoform resolution. Nucleic Acids Res. 51(D1): 179-185 (2023) - [j21]Chantal Scheepbouwer
, Michael Hackenberg
, Monique A J. van Eijndhoven, Alan Gerber
, Michiel Pegtel
, Cristina Gómez-Martín
:
NORMSEQ: a tool for evaluation, selection and visualization of RNA-Seq normalization methods. Nucleic Acids Res. 51(W1): 372-378 (2023) - 2022
- [j20]Bastian Fromm
, Eirik Høye
, Diana Domanska, Xiangfu Zhong
, Ernesto Aparicio-Puerta
, Vladimir Ovchinnikov
, Sinan U. Umu, Peter J. Chabot
, Wenjing Kang, Morteza Aslanzadeh, Marcel Tarbier
, Emilio Mármol-Sánchez
, Gianvito Urgese
, Morten Johansen, Eivind Hovig
, Michael Hackenberg
, Marc R. Friedländer, Kevin J. Peterson:
MirGeneDB 2.1: toward a complete sampling of all major animal phyla. Nucleic Acids Res. 50(D1): 204-210 (2022) - [j19]Ernesto Aparicio-Puerta
, Cristina Gómez-Martín
, Stavros Giannoukakos
, José María Medina
, Chantal Scheepbouwer
, Adrián García-Moreno
, Pedro Carmona-Saez
, Bastian Fromm
, Michiel Pegtel, Andreas Keller
, Juan Antonio Marchal
, Michael Hackenberg
:
sRNAbench and sRNAtoolbox 2022 update: accurate miRNA and sncRNA profiling for model and non-model organisms. Nucleic Acids Res. 50(W1): 710-717 (2022) - 2020
- [j18]Thomas Desvignes
, Phillipe Loher, Karen Eilbeck, Jeffery Ma, Gianvito Urgese
, Bastian Fromm
, Jason Sydes
, Ernesto Aparicio-Puerta
, Víctor Barrera, Roderic Espín
, Florian Thibord
, Xavier Bofill-De Ros
, Eric Londin
, Aristeidis G. Telonis
, Elisa Ficarra, Marc R. Friedländer, John H. Postlethwait
, Isidore Rigoutsos
, Michael Hackenberg
, Ioannis S. Vlachos
, Marc K. Halushka
, Lorena Pantano
:
Unification of miRNA and isomiR research: the mirGFF3 format and the mirtop API. Bioinform. 36(3): 698-703 (2020) - [j17]Bastian Fromm
, Diana Domanska, Eirik Høye
, Vladimir Ovchinnikov
, Wenjing Kang, Ernesto Aparicio-Puerta
, Morten Johansen, Kjersti Flatmark, Anthony Mathelier
, Eivind Hovig
, Michael Hackenberg
, Marc R. Friedländer
, Kevin J. Peterson:
MirGeneDB 2.0: the metazoan microRNA complement. Nucleic Acids Res. 48(Database-Issue): D132-D141 (2020) - [j16]Ernesto Aparicio-Puerta
, Cristina Gómez-Martín
, Stavros Giannoukakos
, José María Medina
, Juan Antonio Marchal, Michael Hackenberg
:
mirnaQC: a webserver for comparative quality control of miRNA-seq data. Nucleic Acids Res. 48(Webserver-Issue): W262-W267 (2020) - [c3]Nicolas Potie, Stavros Giannoukakos, Michael Hackenberg, Alberto Fernández:
Applying Feature Selection to Improve Predictive Performance and Explainability in Lung Cancer Detection with Soft Computing. HICSS 2020: 1-10
2010 – 2019
- 2019
- [j15]Ernesto Aparicio-Puerta
, David Jáspez
, Ricardo Lebrón
, Danijela Koppers-Lalic
, Juan Antonio Marchal, Michael Hackenberg
:
liqDB: a small-RNAseq knowledge discovery database for liquid biopsy studies. Nucleic Acids Res. 47(Database-Issue): D113-D120 (2019) - [j14]Ernesto Aparicio-Puerta
, Ricardo Lebrón
, Antonio Rueda, Cristina Gómez-Martín
, Stavros Giannoukakos
, David Jáspez
, José María Medina
, Andreja Zubkovic
, Igor Jurak
, Bastian Fromm
, Juan Antonio Marchal, José L. Oliver
, Michael Hackenberg
:
sRNAbench and sRNAtoolbox 2019: intuitive fast small RNA profiling and differential expression. Nucleic Acids Res. 47(Webserver-Issue): W530-W535 (2019) - [c2]Nicolas Potie, Stavros Giannoukakos, Michael Hackenberg
, Alberto Fernández:
On the Need of Interpretability for Biomedical Applications: Using Fuzzy Models for Lung Cancer Prediction with Liquid Biopsy. FUZZ-IEEE 2019: 1-6 - 2017
- [j13]Ricardo Lebrón
, Cristina Gómez-Martín
, Pedro Carpena
, Pedro Bernaola-Galván, Guillermo Barturen
, Michael Hackenberg
, José L. Oliver
:
NGSmethDB 2017: enhanced methylomes and differential methylation. Nucleic Acids Res. 45(Database-Issue): D97-D103 (2017) - [p1]Guillermo Barturen, José L. Oliver
, Michael Hackenberg
:
Error Correction in Methylation Profiling From NGS Bisulfite Protocols. Algorithms for Next-Generation Sequencing Data 2017: 167-183 - 2015
- [j12]Antonio Rueda, Guillermo Barturen
, Ricardo Lebrón
, Cristina Gómez-Martín
, Ángel M. Alganza, José L. Oliver
, Michael Hackenberg
:
sRNAtoolbox: an integrated collection of small RNA research tools. Nucleic Acids Res. 43(Webserver-Issue): W467-W473 (2015) - 2014
- [j11]Francisco Dios, Guillermo Barturen
, Ricardo Lebrón
, Antonio Rueda, Michael Hackenberg
, José L. Oliver
:
DNA clustering and genome complexity. Comput. Biol. Chem. 53: 71-78 (2014) - [j10]Stefanie Geisen, Guillermo Barturen
, Ángel M. Alganza, Michael Hackenberg
, José L. Oliver
:
NGSmethDB: an updated genome resource for high quality, single-cytosine resolution methylomes. Nucleic Acids Res. 42(Database-Issue): 53-59 (2014) - 2013
- [c1]Guillermo Barturen, José L. Oliver, Michael Hackenberg:
Best practices for SNV and methylation calling from bisulfite sequencing data. IWBBIO 2013: 125 - 2011
- [j9]Michael Hackenberg
, Pedro Carpena
, Pedro Bernaola-Galván
, Guillermo Barturen
, Ángel M. Alganza, José L. Oliver
:
WordCluster: detecting clusters of DNA words and genomic elements. Algorithms Mol. Biol. 6: 2 (2011) - [j8]Michael Hackenberg
, Guillermo Barturen
, José L. Oliver
:
NGSmethDB: a database for next-generation sequencing single-cytosine-resolution DNA methylation data. Nucleic Acids Res. 39(Database-Issue): 75-79 (2011) - [j7]Michael Hackenberg
, Naiara Rodríguez-Ezpeleta
, Ana M. Aransay
:
miRanalyzer: an update on the detection and analysis of microRNAs in high-throughput sequencing experiments. Nucleic Acids Res. 39(Web-Server-Issue): 132-138 (2011) - 2010
- [j6]Martin Sturm, Michael Hackenberg
, David Langenberger
, Dmitrij Frishman:
TargetSpy: a supervised machine learning approach for microRNA target prediction. BMC Bioinform. 11: 292 (2010)
2000 – 2009
- 2009
- [j5]Michael Hackenberg
, Gorka Lasso
, Rune Matthiesen
:
ContDist: a tool for the analysis of quantitative gene and promoter properties. BMC Bioinform. 10 (2009) - [j4]Michael Hackenberg
, Martin Sturm, David Langenberger
, Juan Manuel Falcón-Pérez, Ana M. Aransay
:
miRanalyzer: a microRNA detection and analysis tool for next-generation sequencing experiments. Nucleic Acids Res. 37(Web-Server-Issue): 68-76 (2009) - 2008
- [j3]Michael Hackenberg
, Rune Matthiesen
:
Annotation-Modules: a tool for finding significant combinations of multisource annotations for gene lists. Bioinform. 24(11): 1386-1393 (2008) - 2006
- [j2]Michael Hackenberg
, Christopher Previti, Pedro Luis Luque-Escamilla
, Pedro Carpena
, José Martínez-Aroza
, José L. Oliver
:
CpGcluster: a distance-based algorithm for CpG-island detection. BMC Bioinform. 7: 446 (2006) - 2004
- [j1]José L. Oliver
, Pedro Carpena
, Michael Hackenberg
, Pedro Bernaola-Galván
:
IsoFinder: computational prediction of isochores in genome sequences. Nucleic Acids Res. 32(Web-Server-Issue): 287-292 (2004)
Coauthor Index
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last updated on 2024-08-22 19:46 CEST by the dblp team
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