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Mario Stanke
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2020 – today
- 2023
- [j25]Tomás Bruna, Heng Li, Joseph Guhlin, Daniel Honsel, Steffen Herbold, Mario Stanke, Natalia Nenasheva, Matthis Ebel
, Lars Gabriel, Katharina Jasmin Hoff:
Galba: genome annotation with miniprot and AUGUSTUS. BMC Bioinform. 24(1): 327 (2023) - 2022
- [j24]Darvin Mertsch, Mario Stanke
:
End-to-end learning of evolutionary models to find coding regions in genome alignments. Bioinform. 38(7): 1857-1862 (2022) - [j23]Matthis Ebel
, Giovanna Migliorelli, Mario Stanke
:
Global, highly specific and fast filtering of alignment seeds. BMC Bioinform. 23(1): 225 (2022) - [c2]Johanna Lange
, Mario Stanke
, Marc Ebner
:
Co-evolution of Spies and Resistance Fighters. EvoApplications 2022: 487-502 - 2021
- [j22]Lars Gabriel, Katharina Jasmin Hoff
, Tomás Bruna, Mark Borodovsky, Mario Stanke
:
TSEBRA: transcript selector for BRAKER. BMC Bioinform. 22(1): 566 (2021)
2010 – 2019
- 2019
- [j21]Mario Stanke
, Willy Bruhn, Felix Becker, Katharina Jasmin Hoff
:
VARUS: sampling complementary RNA reads from the sequence read archive. BMC Bioinform. 20(1): 558:1-558:7 (2019) - 2016
- [j20]Katharina Jasmin Hoff
, Simone Lange, Alexandre Lomsadze, Mark Borodovsky, Mario Stanke:
BRAKER1: Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET and AUGUSTUS. Bioinform. 32(5): 767-769 (2016) - [j19]Stefanie König, Lars Romoth, Lizzy Gerischer, Mario Stanke:
Simultaneous gene finding in multiple genomes. Bioinform. 32(22): 3388-3395 (2016) - 2015
- [i1]Stefanie König, Lars Romoth, Lizzy Gerischer, Mario Stanke:
Simultaneous gene finding in multiple genomes. PeerJ Prepr. 3: e1296 (2015) - 2014
- [j18]Zhijie Dong, Keyu Wang, Truong Khanh Linh Dang, Mehmet Gültas
, Marlon Welter, Torsten Wierschin, Mario Stanke, Stephan Waack:
CRF-based models of protein surfaces improve protein-protein interaction site predictions. BMC Bioinform. 15: 277 (2014) - 2013
- [j17]Katharina Jasmin Hoff
, Mario Stanke:
WebAUGUSTUS - a web service for training AUGUSTUS and predicting genes in eukaryotes. Nucleic Acids Res. 41(Webserver-Issue): 123-128 (2013) - 2012
- [j16]Anne-Kathrin Schultz
, Ingo Bulla, Mariama Abdou-Chekaraou, Emmanuel Gordien, Burkhard Morgenstern, Fabien Zoulim, Paul Dény, Mario Stanke:
jpHMM: recombination analysis in viruses with circular genomes such as the hepatitis B virus. Nucleic Acids Res. 40(Web-Server-Issue): 193-198 (2012) - 2011
- [j15]Oliver Keller, Martin Kollmar
, Mario Stanke, Stephan Waack:
A novel hybrid gene prediction method employing protein multiple sequence alignments. Bioinform. 27(6): 757-763 (2011) - [j14]Thomas Unterthiner
, Anne-Kathrin Schultz
, Jan Bulla, Burkhard Morgenstern
, Mario Stanke, Ingo Bulla:
Detection of viral sequence fragments of HIV-1 subfamilies yet unknown. BMC Bioinform. 12: 93 (2011) - 2010
- [j13]Ingo Bulla, Anne-Kathrin Schultz
, Fabian Schreiber
, Ming Zhang, Thomas Leitner, Bette T. Korber
, Burkhard Morgenstern, Mario Stanke:
HIV classification using the coalescent theory. Bioinform. 26(11): 1409-1415 (2010)
2000 – 2009
- 2009
- [j12]Dietmar Sommerfeld, Thomas Lingner, Mario Stanke, Burkhard Morgenstern, Harald Richter:
AUGUSTUS at MediGRID: Adaption of a bioinformatics application to grid computing for efficient genome analysis. Future Gener. Comput. Syst. 25(3): 337-345 (2009) - [j11]Anne-Kathrin Schultz
, Ming Zhang, Ingo Bulla, Thomas Leitner, Bette T. Korber
, Burkhard Morgenstern, Mario Stanke:
jpHMM: Improving the reliability of recombination prediction in HIV-1. Nucleic Acids Res. 37(Web-Server-Issue): 647-651 (2009) - 2008
- [j10]Mario Stanke, Mark Diekhans
, Robert Baertsch
, David Haussler:
Using native and syntenically mapped cDNA alignments to improve de novo gene finding. Bioinform. 24(5): 637-644 (2008) - [j9]Oliver Keller, Florian Odronitz, Mario Stanke, Martin Kollmar
, Stephan Waack:
Scipio: Using protein sequences to determine the precise exon/intron structures of genes and their orthologs in closely related species. BMC Bioinform. 9 (2008) - [j8]Donna Karolchik, Robert M. Kuhn, Robert Baertsch
, Galt P. Barber, Hiram Clawson
, Mark Diekhans
, Belinda Giardine, Rachel A. Harte, Angela S. Hinrichs, Fan Hsu, Kord M. Kober
, Webb Miller, Jakob Skou Pedersen
, Andy Pohl, Brian J. Raney, Brooke L. Rhead, Kate R. Rosenbloom, Kayla E. Smith, Mario Stanke, Archana Thakkapallayil, Heather Trumbower, Ting Wang, Ann S. Zweig, David Haussler, W. James Kent:
The UCSC Genome Browser Database: 2008 update. Nucleic Acids Res. 36(Database-Issue): 773-779 (2008) - 2007
- [j7]Robert M. Kuhn, Donna Karolchik, Ann S. Zweig, Heather Trumbower, Daryl J. Thomas, Archana Thakkapallayil, Charles W. Sugnet, Mario Stanke, Kayla E. Smith, Adam C. Siepel
, Kate R. Rosenbloom, Brooke L. Rhead, Brian J. Raney, Andy Pohl, Jakob Skou Pedersen
, Fan Hsu, Angela S. Hinrichs, Rachel A. Harte, Mark Diekhans
, Hiram Clawson
, Gill Bejerano, Galt P. Barber, Robert Baertsch, David Haussler, W. James Kent:
The UCSC genome browser database: update 2007. Nucleic Acids Res. 35(Database-Issue): 668-673 (2007) - 2006
- [j6]Mario Stanke, Oliver Schöffmann, Burkhard Morgenstern
, Stephan Waack:
Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources. BMC Bioinform. 7: 62 (2006) - [j5]Anne-Kathrin Schultz
, Ming Zhang, Thomas Leitner, Carla Kuiken, Bette T. Korber
, Burkhard Morgenstern
, Mario Stanke:
A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomes. BMC Bioinform. 7: 265 (2006) - [j4]Mario Stanke, Oliver Keller, Irfan Gunduz, Alec Hayes, Stephan Waack, Burkhard Morgenstern:
AUGUSTUS: ab initio prediction of alternative transcripts. Nucleic Acids Res. 34(Web-Server-Issue): 435-439 (2006) - [j3]Ming Zhang, Anne-Kathrin Schultz
, Charles Calef, Carla Kuiken, Thomas Leitner, Bette T. Korber
, Burkhard Morgenstern, Mario Stanke:
jpHMM at GOBICS: a web server to detect genomic recombinations in HIV-1. Nucleic Acids Res. 34(Web-Server-Issue): 463-465 (2006) - 2005
- [j2]Mario Stanke, Burkhard Morgenstern:
AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints. Nucleic Acids Res. 33(Web-Server-Issue): 465-467 (2005) - 2004
- [b1]Mario Stanke:
Gene prediction with a hidden Markov model. University of Göttingen, 2004 - [j1]Mario Stanke, Rasmus Steinkamp, Stephan Waack, Burkhard Morgenstern:
AUGUSTUS: a web server for gene finding in eukaryotes. Nucleic Acids Res. 32(Web-Server-Issue): 309-312 (2004) - 2003
- [c1]Mario Stanke, Stephan Waack:
Gene prediction with a hidden Markov model and a new intron submodel. ECCB 2003: 215-225
Coauthor Index
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last updated on 2024-08-05 20:25 CEST by the dblp team
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