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Dan F. DeBlasio
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- affiliation: University of Arizona, Tucson, USA
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2020 – today
- 2024
- [j14]Guillaume Marçais, Dan F. DeBlasio, Carl Kingsford:
Sketching Methods with Small Window Guarantee Using Minimum Decycling Sets. J. Comput. Biol. 31(7): 597-615 (2024) - 2023
- [i2]Guillaume Marçais, Dan F. DeBlasio, Carl Kingsford:
Sketching methods with small window guarantee using minimum decycling sets. CoRR abs/2311.03592 (2023) - 2021
- [c9]Maria-Florina Balcan, Dan F. DeBlasio, Travis Dick, Carl Kingsford, Tuomas Sandholm, Ellen Vitercik:
How much data is sufficient to learn high-performing algorithms? generalization guarantees for data-driven algorithm design. STOC 2021: 919-932 - 2020
- [j13]Dan F. DeBlasio, Kwanho Kim, Carl Kingsford:
More Accurate Transcript Assembly via Parameter Advising. J. Comput. Biol. 27(8): 1181-1189 (2020)
2010 – 2019
- 2019
- [j12]Guillaume Marçais, Dan F. DeBlasio, Prashant Pandey, Carl Kingsford:
Locality-sensitive hashing for the edit distance. Bioinform. 35(14): i127-i135 (2019) - [c8]Dan F. DeBlasio, Fiyinfoluwa Gbosibo, Carl Kingsford, Guillaume Marçais:
Practical Universal k-mer Sets for Minimizer Schemes. BCB 2019: 167-176 - [i1]Maria-Florina Balcan, Dan F. DeBlasio, Travis Dick, Carl Kingsford, Tuomas Sandholm, Ellen Vitercik:
How much data is sufficient to learn high-performing algorithms? CoRR abs/1908.02894 (2019) - 2018
- [j11]Guillaume Marçais, Dan F. DeBlasio, Carl Kingsford:
Asymptotically optimal minimizers schemes. Bioinform. 34(13): i13-i22 (2018) - [j10]Mehedi Hassan, Aishwarya Alex Namasivayam, Dan F. DeBlasio, Nazeefa Fatima, Benjamin Siranosian, R. Gonzalo Parra, Bart Cuypers, Sayane Shome, Alexander Miguel Monzon, Julien Fumey, Farzana Rahman:
Reflections on a journey: a retrospective of the ISCB Student Council symposium series. BMC Bioinform. 19-S(12): 347:1-347:8 (2018) - [j9]Dan F. DeBlasio, John D. Kececioglu:
Adaptive Local Realignment of Protein Sequences. J. Comput. Biol. 25(7): 780-793 (2018) - [j8]Anupama Jigisha, Margherita Francescatto, Farzana Rahman, Nazeefa Fatima, Dan F. DeBlasio, Avinash Kumar Shanmugam, Venkata P. Satagopam, Alberto Santos, Pandurang Kolekar, Magali Michaut, Emre Guney:
The ISCB Student Council Internship Program: Expanding computational biology capacity worldwide. PLoS Comput. Biol. 14(1) (2018) - 2017
- [b2]Dan F. DeBlasio, John D. Kececioglu:
Parameter Advising for Multiple Sequence Alignment. Computational Biology 26, Springer 2017, ISBN 978-3-319-64917-7, pp. 1-142 - [j7]Dan F. DeBlasio, John D. Kececioglu:
Core column prediction for protein multiple sequence alignments. Algorithms Mol. Biol. 12(1): 11:1-11:16 (2017) - [j6]Dan F. DeBlasio, John D. Kececioglu:
Learning Parameter-Advising Sets for Multiple Sequence Alignment. IEEE ACM Trans. Comput. Biol. Bioinform. 14(5): 1028-1041 (2017) - [c7]Dan F. DeBlasio, John D. Kececioglu:
Boosting Alignment Accuracy by Adaptive Local Realignment. RECOMB 2017: 1-17 - 2016
- [b1]Dan F. DeBlasio:
Parameter Advising for Multiple Sequence Alignment. University of Arizona, Tucson, USA, 2016 - [j5]Katie Wilkins, Mehedi Hassan, Margherita Francescatto, Jakob B. Jespersen, R. Gonzalo Parra, Bart Cuypers, Dan F. DeBlasio, Alexander Junge, Anupama Jigisha, Farzana Rahman, Griet Laenen, Sander Willems, Lieven Thorrez, Yves Moreau, Nagarajan Raju, Sonia P. Chothani, C. Ramakrishnan, Masakazu Sekijima, M. Michael Gromiha, Paddy J. Slator, Nigel J. Burroughs, Przemyslaw Szalaj, Zhonghui Tang, Paul J. Michalski, Oskar Luo, Xingwang Li, Yijun Ruan, Dariusz Plewczynski, Giulia Fiscon, Emanuel Weitschek, Massimo Ciccozzi, Paola Bertolazzi, Giovanni Felici, Pieter Meysman, Manu Vanaerschot, Maya Berg, Hideo Imamura, Jean-Claude Dujardin, Kris Laukens, Westa Domanova, James R. Krycer, Rima Chaudhuri, Pengyi Yang, Fatemeh Vafaee, Daniel J. Fazakerley, Sean J. Humphrey, David E. James, Zdenka Kuncic:
Highlights from the 11th ISCB Student Council Symposium 2015: Dublin, Ireland. 10 July 2015. BMC Bioinform. 17(S-3) (2016) - [c6]Dan F. DeBlasio, John D. Kececioglu:
Adaptive Local Realignment via Parameter Advising. BCB 2016: 510-511 - [c5]Dan F. DeBlasio, John D. Kececioglu:
Predicting Core Columns of Protein Multiple Sequence Alignments for Improved Parameter Advising. WABI 2016: 77-89 - 2015
- [j4]Farzana Rahman, Katie Wilkins, Annika Jacobsen, Alexander Junge, Esmeralda Vicedo, Dan F. DeBlasio, Anupama Jigisha, Tomás Di Domenico:
Highlights from the tenth ISCB Student Council Symposium 2014. BMC Bioinform. 16(S-2): A1 (2015) - [j3]Dan F. DeBlasio, John D. Kececioglu:
Parameter advising for multiple sequence alignment. BMC Bioinform. 16(S-2): A3 (2015) - [c4]Dan F. DeBlasio, John D. Kececioglu:
Ensemble multiple sequence alignment via advising. BCB 2015: 452-461 - 2014
- [c3]Dan F. DeBlasio, John D. Kececioglu:
Learning parameter sets for alignment advising. BCB 2014: 230-239 - 2013
- [j2]John D. Kececioglu, Dan F. DeBlasio:
Accuracy Estimation and Parameter Advising for Protein Multiple Sequence Alignment. J. Comput. Biol. 20(4): 259-279 (2013) - 2012
- [j1]Daniel DeBlasio, Jocelyne Bruand, Shaojie Zhang:
A Memory Efficient Method for Structure-Based RNA Multiple Alignment. IEEE ACM Trans. Comput. Biol. Bioinform. 9(1): 1-11 (2012) - [c2]Dan F. DeBlasio, Travis J. Wheeler, John D. Kececioglu:
Estimating the Accuracy of Multiple Alignments and its Use in Parameter Advising. RECOMB 2012: 45-59
2000 – 2009
- 2009
- [c1]Daniel DeBlasio, Jocelyne Bruand, Shaojie Zhang:
PMFastR: A New Approach to Multiple RNA Structure Alignment. WABI 2009: 49-61
Coauthor Index
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