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2020 – today
- 2024
[c12]Scott L. Fleming, Alejandro Lozano, William J. Haberkorn, Jenelle A. Jindal, Eduardo Pontes Reis, Rahul Thapa, Louis Blankemeier, Julian Z. Genkins, Ethan Steinberg, Ashwin Nayak, Birju S. Patel, Chia-Chun Chiang, Alison Callahan, Zepeng Huo, Sergios Gatidis, Scott J. Adams, Oluseyi Fayanju, Shreya J. Shah, Thomas Savage, Ethan Goh, Akshay S. Chaudhari, Nima Aghaeepour, Christopher D. Sharp, Michael A. Pfeffer, Percy Liang, Jonathan H. Chen, Keith E. Morse, Emma P. Brunskill, Jason A. Fries, Nigam H. Shah:
MedAlign: A Clinician-Generated Dataset for Instruction Following with Electronic Medical Records. AAAI 2024: 22021-22030- [i6]Alison Callahan, Duncan C. McElfresh, Juan M. Banda, Gabrielle Bunney, Danton Char, Jonathan H. Chen, Conor K. Corbin, Debadutta Dash, Norman L. Downing, Sneha S. Jain, Nikesh Kotecha, Jonathan Masterson, Michelle M. Mello, Keith E. Morse, Srikar Nallan, Abby Pandya, Anurang Revri, Aditya Sharma, Christopher D. Sharp, Rahul Thapa, Michael Wornow, Alaa Youssef, Michael A. Pfeffer, Nigam H. Shah:
Standing on FURM ground - A framework for evaluating Fair, Useful, and Reliable AI Models in healthcare systems. CoRR abs/2403.07911 (2024) - 2023
- [j16]Michael Wornow
, Elsie Gyang Ross, Alison Callahan, Nigam H. Shah:
APLUS: A Python library for usefulness simulations of machine learning models in healthcare. J. Biomed. Informatics 139: 104319 (2023) - [j15]Yizhe Xu, Katelyn K. Bechler, Alison Callahan, Nigam Shah:
Principled estimation and evaluation of treatment effect heterogeneity: A case study application to dabigatran for patients with atrial fibrillation. J. Biomed. Informatics 143: 104420 (2023) - [i5]Scott L. Fleming, Alejandro Lozano, William J. Haberkorn, Jenelle A. Jindal, Eduardo Pontes Reis, Rahul Thapa, Louis Blankemeier, Julian Z. Genkins, Ethan Steinberg, Ashwin Nayak, Birju S. Patel, Chia-Chun Chiang, Alison Callahan, Zepeng Huo, Sergios Gatidis, Scott J. Adams, Oluseyi Fayanju, Shreya J. Shah, Thomas Savage, Ethan Goh, Akshay S. Chaudhari, Nima Aghaeepour, Christopher D. Sharp, Michael A. Pfeffer, Percy Liang, Jonathan H. Chen, Keith E. Morse, Emma P. Brunskill, Jason A. Fries, Nigam H. Shah:
MedAlign: A Clinician-Generated Dataset for Instruction Following with Electronic Medical Records. CoRR abs/2308.14089 (2023) - 2022
- [j14]Jonathan Lu, Amelia Sattler, Samantha Wang, Ali Raza Khaki, Alison Callahan, Scott L. Fleming, Rebecca Fong, Benjamin Ehlert, Ron C. Li, Lisa Shieh, Kavitha Ramchandran, Michael Gensheimer, Sarah Chobot, Stephen Pfohl, Siyun Li, Kenny Shum, Nitin Parikh, Priya Desai, Briththa Seevaratnam, Melanie Hanson, Margaret Smith, Yizhe Xu, Arjun Gokhale, Steven Lin, Michael A. Pfeffer, Winifred Teuteberg, Nigam H. Shah:
Considerations in the reliability and fairness audits of predictive models for advance care planning. Frontiers Digit. Health 4 (2022) - [c11]Julian Genkins, Dev Dash, Lillian Sung, Saurabh Gombar, Alison Callahan:
Real-World Data at the Point-of-Care: Exploring Education Needs Across All Stakeholders. AMIA 2022 - [c10]Jason A. Fries, Leon Weber, Natasha Seelam, Gabriel Altay, Debajyoti Datta, Samuele Garda, Sunny Kang, Rosaline Su, Wojciech Kusa, Samuel Cahyawijaya, Fabio Barth, Simon Ott, Matthias Samwald, Stephen H. Bach, Stella Biderman, Mario Sänger, Bo Wang, Alison Callahan, Daniel León Periñán, Théo Gigant, Patrick Haller, Jenny Chim, José D. Posada, John M. Giorgi, Karthik Rangasai Sivaraman, Marc Pàmies, Marianna Nezhurina, Robert Martin, Michael Cullan, Moritz Freidank, Nathan Dahlberg, Shubhanshu Mishra, Shamik Bose, Nicholas Broad, Yanis Labrak, Shlok Deshmukh, Sid Kiblawi, Ayush Singh, Minh Chien Vu, Trishala Neeraj, Jonas Golde, Albert Villanova del Moral, Benjamin Beilharz:
BigBio: A Framework for Data-Centric Biomedical Natural Language Processing. NeurIPS 2022 - [i4]Jason Alan Fries, Leon Weber, Natasha Seelam, Gabriel Altay, Debajyoti Datta, Samuele Garda, Myungsun Kang, Ruisi Su, Wojciech Kusa, Samuel Cahyawijaya, Fabio Barth, Simon Ott, Matthias Samwald, Stephen H. Bach, Stella Biderman, Mario Sänger, Bo Wang, Alison Callahan, Daniel León Periñán, Théo Gigant, Patrick Haller, Jenny Chim, José David Posada, John Michael Giorgi, Karthik Rangasai Sivaraman, Marc Pàmies, Marianna Nezhurina, Robert Martin, Michael Cullan, Moritz Freidank, Nathan Dahlberg, Shubhanshu Mishra, Shamik Bose, Nicholas Michio Broad, Yanis Labrak, Shlok S. Deshmukh, Sid Kiblawi, Ayush Singh, Minh Chien Vu, Trishala Neeraj, Jonas Golde, Albert Villanova del Moral, Benjamin Beilharz:
BigBIO: A Framework for Data-Centric Biomedical Natural Language Processing. CoRR abs/2206.15076 (2022) - 2021
- [j13]Alison Callahan, Vladimir Polony, José D. Posada, Juan M. Banda, Saurabh Gombar, Nigam H. Shah:
ACE: the Advanced Cohort Engine for searching longitudinal patient records. J. Am. Medical Informatics Assoc. 28(7): 1468-1479 (2021) - 2020
- [j12]Sehj Kashyap, Saurabh Gombar, Steve Yadlowsky, Alison Callahan, Jason A. Fries, Benjamin A. Pinsky, Nigam H. Shah:
Measure what matters: Counts of hospitalized patients are a better metric for health system capacity planning for a reopening. J. Am. Medical Informatics Assoc. 27(7): 1026-1131 (2020) - [j11]Alison Callahan, Ethan Steinberg, Jason A. Fries, Saurabh Gombar, Birju S. Patel, Conor K. Corbin, Nigam H. Shah:
Estimating the efficacy of symptom-based screening for COVID-19. npj Digit. Medicine 3 (2020) - [i3]Jason A. Fries, Ethan Steinberg, Saelig Khattar, Scott L. Fleming, José D. Posada, Alison Callahan, Nigam H. Shah:
Trove: Ontology-driven weak supervision for medical entity classification. CoRR abs/2008.01972 (2020)
2010 – 2019
- 2019
- [j10]Alison Callahan, Jason A. Fries, Christopher Ré, James I Huddleston III, Nicholas J. Giori, Scott L. Delp, Nigam H. Shah:
Medical device surveillance with electronic health records. npj Digit. Medicine 2 (2019) - [j9]Saurabh Gombar, Alison Callahan, Robert M. Califf, Robert A. Harrington, Nigam H. Shah:
It is time to learn from patients like mine. npj Digit. Medicine 2 (2019) - [c9]Noémie Elhadad, Iñigo Urteaga, Alison Callahan, Jenna Reps, Patrick B. Ryan:
Learning Across a Healthcare Data Network to Improve Model Robustness and Evidence Reliability. AMIA 2019 - [i2]Alison Callahan, Jason A. Fries, Christopher Ré, James I Huddleston III, Nicholas J. Giori, Scott L. Delp, Nigam H. Shah:
Medical device surveillance with electronic health records. CoRR abs/1904.07640 (2019) - 2016
- [j8]Alison Callahan, Saminda Abeyruwan, Hassan Al-Ali, Kunie Sakurai, Adam R. Ferguson, Phillip G. Popovich, Nigam H. Shah, Ubbo Visser, John L. Bixby, Vance P. Lemmon:
RegenBase: a knowledge base of spinal cord injury biology for translational research. Database J. Biol. Databases Curation 2016 (2016) - [c8]Alejandro Schuler, Vincent X. Liu, Joe Wan, Alison Callahan, Madeleine Udell, David E. Stark, Nigam H. Shah:
Discovering Patient Phenotypes Using Generalized Low Rank Models. PSB 2016: 144-155 - 2015
- [j7]Alison Callahan, Juan Cifuentes, Michel Dumontier:
An evidence-based approach to identify aging-related genes in Caenorhabditis elegans. BMC Bioinform. 16: 40:1-40:18 (2015) - [c7]David J. Odgers, Rave Harpaz, Alison Callahan, Gregor Stiglic, Nigam H. Shah:
Analyzing Search Behavior of Healthcare Professionals for Drug Safety Surveillance. Pacific Symposium on Biocomputing 2015: 306-317 - 2014
- [j6]Michel Dumontier, Christopher J. O. Baker, Joachim Baran, Alison Callahan, Leonid L. Chepelev, Jose Cruz-Toledo, Nicholas R. Del Rio, Geraint Duck, Laura Inés Furlong, Nichealla Keath, Dana Klassen, Jamie P. McCusker, Núria Queralt-Rosinach, Matthias Samwald, Natalia Villanueva-Rosales, Mark D. Wilkinson, Robert Hoehndorf:
The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery. J. Biomed. Semant. 5: 14 (2014) - [j5]Alejandro Rodríguez González, Alison Callahan, José Cruz-Toledo, Adrian Garcia, Mikel Egaña Aranguren, Michel Dumontier, Mark D. Wilkinson:
Automatically exposing OpenLifeData via SADI semantic Web Services. J. Biomed. Semant. 5: 46 (2014) - [c6]Michel Dumontier, Alison Callahan, Jose Cruz-Toledo, Peter Ansell, Vincent Emonet, François Belleau, Arnaud Droit:
Bio2RDF Release 3: A larger, more connected network of Linked Data for the Life Sciences. ISWC (Posters & Demos) 2014: 401-404 - 2013
- [j4]Alison Callahan, Jose Cruz-Toledo, Michel Dumontier:
Ontology-Based Querying with Bio2RDF's Linked Open Data. J. Biomed. Semant. 4(S-1): S1 (2013) - [j3]Alison Callahan, Michel Dumontier, Jodi Schneider, Lars Svensson:
1st Semantic Web Technologies for Libraries and Readers (STLR 2011). Bull. IEEE Tech. Comm. Digit. Libr. 9(1) (2013) - [c5]Alison Callahan, Jose Cruz-Toledo, Peter Ansell, Michel Dumontier:
Bio2RDF Release 2: Improved Coverage, Interoperability and Provenance of Life Science Linked Data. ESWC 2013: 200-212 - [c4]Alison Callahan, Michel Dumontier:
HyQue: A Semantic Web tool for evaluating scientific hypotheses. ICBO 2013: 123 - [c3]Jose Cruz-Toledo, Alison Callahan, Michel Dumontier:
A Large-scale Gene-centric Semantic Web Knowledge Base for Molecular Biology. ORE 2013: 134-139 - [i1]Alison Callahan, Michel Dumontier:
Ovopub: Modular data publication with minimal provenance. CoRR abs/1305.6800 (2013) - 2012
- [c2]Alison Callahan, Michel Dumontier:
Evaluating Scientific Hypotheses Using the SPARQL Inferencing Notation. ESWC 2012: 647-658 - [c1]Alison Callahan, Jose Cruz-Toledo, Peter Ansell, Dana Klassen, Giovanni Tumarello, Michel Dumontier:
Improved Dataset Coverage and Interoperability with Bio2RDF Release 2. SWAT4LS 2012 - 2011
- [j2]Alison Callahan, Michel Dumontier, Nigam H. Shah:
HyQue: evaluating hypotheses using Semantic Web technologies. J. Biomed. Semant. 2(S-2): S3 (2011) - 2010
- [j1]Alison Callahan, Stephen Hockema, Gunther Eysenbach:
Contextual cocitation: Augmenting cocitation analysis and its applications. J. Assoc. Inf. Sci. Technol. 61(6): 1130-1143 (2010)
Coauthor Index
aka: Nigam Shah
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last updated on 2024-08-14 22:16 CEST by the dblp team
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