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Journal Articles
- 2022
[j20]Julio Vera
, Xin Lai, Andreas Baur, Michael Erdmann, Shailendra K. Gupta, Cristiano Guttà, Lucie Heinzerling, Markus V. Heppt, Philipp Maximilian Kazmierczak, Manfred Kunz, Christopher Lischer, Brigitte M. Pützer, Markus Rehm, Christian Ostalecki, Jimmy Retzlaff, Stephan Witt, Olaf Wolkenhauer, Carola Berking:
Melanoma 2.0. Skin cancer as a paradigm for emerging diagnostic technologies, computational modelling and artificial intelligence. Briefings Bioinform. 23(6) (2022)- 2020
- [j19]Nivedita Singh, Martin Eberhardt, Olaf Wolkenhauer, Julio Vera, Shailendra K. Gupta:
An integrative network-driven pipeline for systematic identification of lncRNA-associated regulatory network motifs in metastatic melanoma. BMC Bioinform. 21(1): 329 (2020) - 2019
- [j18]Massimiliano Zanin, Ivan Chorbev, Blaz Stres, Egils Stalidzans, Julio Vera, Paolo Tieri, Filippo Castiglione, Derek Groen, Huiru Zheng, Jan Baumbach, Johannes A. Schmid, José Basilio, Peter Klimek, Natasa Debeljak, Damjana Rozman, Harald H. H. W. Schmidt:
Community effort endorsing multiscale modelling, multiscale data science and multiscale computing for systems medicine. Briefings Bioinform. 20(3): 1057-1062 (2019) - [j17]Hojjat Naderi-Meshkin, Xin Lai, Raheleh Amirkhah, Julio Vera, John E. J. Rasko, Ulf Schmitz:
Exosomal lncRNAs and cancer: connecting the missing links. Bioinform. 35(2): 352-360 (2019) - 2016
- [j16]Ulf Schmitz, Hojjat Naderi-Meshkin, Shailendra K. Gupta, Olaf Wolkenhauer, Julio Vera:
The RNA world in the 21st century - a systems approach to finding non-coding keys to clinical questions. Briefings Bioinform. 17(3): 380-392 (2016) - [j15]Shailendra K. Gupta, Tanushree Jaitly, Ulf Schmitz, Gerold Schuler, Olaf Wolkenhauer, Julio Vera:
Personalized cancer immunotherapy using Systems Medicine approaches. Briefings Bioinform. 17(3): 453-467 (2016) - 2011
- [j14]Svetoslav G. Nikolov, Julio Vera, Ulf Schmitz, Olaf Wolkenhauer:
A model-based strategy to investigate the role of microRNA regulation in cancer signalling networks. Theory Biosci. 130(1): 55-69 (2011) - 2010
- [j13]Peter Raasch, Ulf Schmitz, Nadja Patenge, Julio Vera, Bernd Kreikemeyer, Olaf Wolkenhauer:
Non-coding RNA detection methods combined to improve usability, reproducibility and precision. BMC Bioinform. 11: 491 (2010) - [j12]Julio Vera, Carlos González-Alcón, Alberto Marín-Sanguino, Néstor V. Torres:
Optimization of biochemical systems through mathematical programming: Methods and applications. Comput. Oper. Res. 37(8): 1427-1438 (2010) - [j11]Svetoslav G. Nikolov, Xin Lai, Ulf W. Liebal, Olaf Wolkenhauer, Julio Vera:
Integration of sensitivity and bifurcation analysis to detect critical processes in a model combining signalling and cell population dynamics. Int. J. Syst. Sci. 41(1): 81-105 (2010) - 2009
- [j10]Xin Lai, Svetoslav G. Nikolov, Olaf Wolkenhauer, Julio Vera:
A multi-level model accounting for the effects of JAK2-STAT5 signal modulation in erythropoiesis. Comput. Biol. Chem. 33(4): 312-324 (2009) - [j9]Julio Vera, Taesoo Kwon, Ulf Schmitz, Walter Kolch, Olaf Wolkenhauer:
Exploration of homodimer receptor: homodimer protein interactions. Int. J. Bioinform. Res. Appl. 5(4): 447-457 (2009) - 2008
- [j8]Svetoslav G. Nikolov, Julio Vera, Vladimir Kotev, Olaf Wolkenhauer, Valko Petrov:
Dynamic properties of a delayed protein cross talk model. Biosyst. 91(1): 51-68 (2008) - [j7]Julio Vera, Julie Bachmann, Andrea C. Pfeifer, Verena Becker, Jose A. Hormiga, Néstor Torres Darias, Jens Timmer, Ursula Klingmüller, Olaf Wolkenhauer:
A systems biology approach to analyse amplification in the JAK2-STAT5 signalling pathway. BMC Syst. Biol. 2: 38 (2008) - [j6]Julio Vera, Thomas Millat, Walter Kolch, Olaf Wolkenhauer:
Dynamics of receptor and protein transducer homodimerisation. BMC Syst. Biol. 2: 92 (2008) - [j5]Hannes Link, Julio Vera, Dirk Weuster-Botz, Néstor Torres Darias, Ezequiel Franco-Lara:
Multi-objective steady state optimization of biochemical reaction networks using a constrained genetic algorithm. Comput. Chem. Eng. 32(8): 1707-1713 (2008) - 2007
- [j4]Henning Schmidt, Gunnar Drews, Julio Vera, Olaf Wolkenhauer:
SBML export interface for the systems biology toolbox for MATLAB. Bioinform. 23(10): 1297-1298 (2007) - [j3]Julio Vera, Raul Curto, Marta Cascante, Néstor V. Torres:
Detection of potential enzyme targets by metabolic modelling and optimization: Application to a simple enzymopathy. Bioinform. 23(17): 2281-2289 (2007) - [j2]Julio Vera, Cheng Sun, Yvonne Oertel, Olaf Wolkenhauer:
PLMaddon: a power-law module for the MatlabTM SBToolbox. Bioinform. 23(19): 2638-2640 (2007) - 2003
- [j1]Julio Vera, Néstor V. Torres:
MetMAP: An integrated Matlab TM package for analysis and optimization of metabolic systems. Silico Biol. 4(2): 97-108 (2003)
Conference and Workshop Papers
- 2024
- [c4]Luis Carlos Rivera Monroy, Leonhard Rist, Martin Eberhardt, Christian Ostalecki, Andreas Bauer, Julio Vera, Katharina Breininger, Andreas K. Maier:
Comparative Analysis of Radiomic Features and Gene Expression Profiles in Histopathology Data using Graph Neural Networks. Bildverarbeitung für die Medizin 2024: 160-165 - 2023
- [c3]Luis Carlos Rivera Monroy, Leonhard Rist, Martin Eberhardt, Christian Ostalecki, Andreas Baur, Julio Vera, Katharina Breininger, Andreas Maier:
Employing Graph Representations for Cell-Level Characterization of Melanoma MELC Samples. ISBI 2023: 1-5 - 2022
- [c2]Luis Carlos Rivera Monroy, Martin Eberhardt, Christian Ostalecki, Andreas Baur, Julio Vera, Andreas K. Maier:
Melanoma Segmentation and Classification Employing Imaging and Graph Encodings. CHASE 2022: 144-145 - 2015
- [c1]Sushmita Paul, Julio Vera:
Supervised Cluster Analysis of miRNA Expression Data Using Rough Hypercuboid Partition Matrix. PReMI 2015: 482-494
Informal and Other Publications
- 2023
- [i2]Luis Carlos Rivera Monroy, Leonhard Rist, Martin Eberhardt, Christian Ostalecki, Andreas Bauer, Julio Vera, Katharina Breininger, Andreas K. Maier:
Comparative Analysis of Radiomic Features and Gene Expression Profiles in Histopathology Data Using Graph Neural Networks. CoRR abs/2312.15825 (2023) - 2022
- [i1]Luis Carlos Rivera Monroy, Leonhard Rist, Martin Eberhardt, Christian Ostalecki, Andreas Baur, Julio Vera, Katharina Breininger, Andreas K. Maier:
Employing Graph Representations for Cell-level Characterization of Melanoma MELC Samples. CoRR abs/2211.05884 (2022)
Coauthor Index
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