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ORCIDRuss B. Altman
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- affiliation: Stanford University, CA, USA
- award: Presidential Early Career Award for Scientists and Engineers
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2020 – today
- 2020
[j108]Emily K. Mallory, Matthieu de Rochemonteix, Alexander Ratner, Ambika Acharya, Christopher Ré, Roselie A. Bright, Russ B. Altman
:
Extracting chemical reactions from text using Snorkel. BMC Bioinform. 21(1): 217 (2020)- [j107]Kun-Hsing Yu, Feiran Wang, Gerald J. Berry, Christopher Ré, Russ B. Altman, Michael Snyder, Isaac S. Kohane:
Classifying non-small cell lung cancer types and transcriptomic subtypes using convolutional neural networks. J. Am. Medical Informatics Assoc. 27(5): 757-769 (2020) - [j106]Andre Kumar, Rachael C. Aikens, Jason Hom, Lisa Shieh, Jonathan Chiang, David Morales, Divya Saini, Mark A. Musen, Michael T. M. Baiocchi, Russ B. Altman, Mary K. Goldstein, Steven M. Asch, Jonathan H. Chen:
OrderRex clinical user testing: a randomized trial of recommender system decision support on simulated cases. J. Am. Medical Informatics Assoc. 27(12): 1850-1859 (2020) - [i3]Raphael J. L. Townshend, Martin Vögele, Patricia Suriana, Alexander Derry, Alexander Powers, Yianni Laloudakis, Sidhika Balachandar, Brandon M. Anderson, Stephan Eismann, Risi Kondor, Russ B. Altman, Ron O. Dror:
ATOM3D: Tasks On Molecules in Three Dimensions. CoRR abs/2012.04035 (2020)
2010 – 2019
- 2019
- [j105]Yu-Chen Lo, Tianyun Liu, Kari M. Morrissey, Satoko Kakiuchi-Kiyota, Adam R. Johnson, Fabio Broccatelli, Yu Zhong, Amita Joshi, Russ B. Altman:
Computational analysis of kinase inhibitor selectivity using structural knowledge. Bioinform. 35(2): 235-242 (2019) - [j104]Wen Torng, Russ B. Altman:
High precision protein functional site detection using 3D convolutional neural networks. Bioinform. 35(9): 1503-1512 (2019) - [j103]Jennifer L. Wilson, Mike Wong, Ajinkya Chalke, Nicholas Stepanov, Dragutin Petkovic, Russ B. Altman:
PathFXweb: a web application for identifying drug safety and efficacy phenotypes. Bioinform. 35(21): 4504-4506 (2019) - [j102]Adam Lavertu, Russ B. Altman:
RedMed: Extending drug lexicons for social media applications. J. Biomed. Informatics 99 (2019) - [j101]Wen Torng, Russ B. Altman:
Graph Convolutional Neural Networks for Predicting Drug-Target Interactions. J. Chem. Inf. Model. 59(10): 4131-4149 (2019) - [c78]Kun-Hsing Yu, Feiran Wang, Gerald J. Berry, Christopher Ré, Russ B. Altman, Michael Snyder, Isaac S. Kohane:
Classifying Non-Small Cell Lung Cancer Histopathology Types and Transcriptomic Subtypes using Convolutional Neural Networks. AMIA 2019 - [c77]Sheng Wang, Emily Flynn, Russ B. Altman:
GRep: Gene Set Representation via Gaussian Embedding. RECOMB 2019: 318-319 - [e24]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Marylyn D. Ritchie, Teri E. Klein:
Biocomputing 2019: Proceedings of the Pacific Symposium, The Big Island of Hawaii, Hawaii, USA, January 3-7, 2019. 2019 [contents] - 2018
- [j100]Lichy Han, Mateusz Maciejewski, Christoph Brockel, William Gordon, Scott B. Snapper, Joshua R. Korzenik, Lovisa Afzelius, Russ B. Altman:
A probabilistic pathway score (PROPS) for classification with applications to inflammatory bowel disease. Bioinform. 34(6): 985-993 (2018) - [j99]Bethany Percha, Russ B. Altman:
A global network of biomedical relationships derived from text. Bioinform. 34(15): 2614-2624 (2018) - [j98]Weizhuang Zhou, Russ B. Altman:
Data-driven human transcriptomic modules determined by independent component analysis. BMC Bioinform. 19(1): 327:1-327:25 (2018) - [j97]Bethany Percha, Yuhao Zhang, Selen Bozkurt, Daniel L. Rubin, Russ B. Altman, Curtis P. Langlotz:
Expanding a radiology lexicon using contextual patterns in radiology reports. J. Am. Medical Informatics Assoc. 25(6): 679-685 (2018) - [j96]Jennifer L. Wilson, Rebecca Racz, Tianyun Liu, Oluseyi Adeniyi, Jielin Sun, Anuradha Ramamoorthy, Michael Pacanowski, Russ B. Altman:
PathFX provides mechanistic insights into drug efficacy and safety for regulatory review and therapeutic development. PLoS Comput. Biol. 14(12) (2018) - [c76]Kun-Hsing Yu, Gerald J. Berry, Daniel L. Rubin, Christopher Ré, Russ B. Altman, Michael Snyder:
Unraveling the Molecular Basis of Lung Adenocarcinoma Dedifferentiation and Prognosis by Integrating Omics and Histopathology. AMIA 2018 - [c75]Emily K. Mallory, Ambika Acharya, Stefano E. Rensi, Peter J Turnbaugh, Roselie A. Bright, Russ B. Altman:
Chemical reaction vector embeddings: towards predicting drug metabolism in the human gut microbiome. PSB 2018: 56-67 - [c74]Dragutin Petkovic, Russ B. Altman, Mike Wong, Arthur Vigil:
Improving the explainability of Random Forest classifier - user centered approach. PSB 2018: 204-215 - [c73]Paul Previde, Brook Thomas, Mike Wong, Emily K. Mallory, Dragutin Petkovic, Russ B. Altman, Anagha Kulkarni:
GeneDive: A gene interaction search and visualization tool to facilitate precision medicine. PSB 2018: 590-601 - [e23]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Marylyn D. Ritchie, Teri E. Klein:
Biocomputing 2018: Proceedings of the Pacific Symposium, The Big Island of Hawaii, Hawaii, USA, January 3-7, 2018. 2018 [contents] - 2017
- [j95]Weizhuang Zhou, Lichy Han, Russ B. Altman:
Imputing gene expression to maximize platform compatibility. Bioinform. 33(4): 522-528 (2017) - [j94]Wen Torng, Russ B. Altman:
3D deep convolutional neural networks for amino acid environment similarity analysis. BMC Bioinform. 18(1): 302 (2017) - [j93]Jonathan H. Chen, Muthuraman Alagappan, Mary K. Goldstein, Steven M. Asch, Russ B. Altman:
Decaying relevance of clinical data towards future decisions in data-driven inpatient clinical order sets. Int. J. Medical Informatics 102: 71-79 (2017) - [j92]Jonathan H. Chen, Mary K. Goldstein, Steven M. Asch, Lester W. Mackey, Russ B. Altman:
Predicting inpatient clinical order patterns with probabilistic topic models vs conventional order sets. J. Am. Medical Informatics Assoc. 24(3): 472-480 (2017) - [j91]Lichy Han, Robert Ball, Carol A. Pamer, Russ B. Altman, Scott Proestel:
Development of an automated assessment tool for MedWatch reports in the FDA adverse event reporting system. J. Am. Medical Informatics Assoc. 24(5): 913-920 (2017) - [c72]Kun-Hsing Yu, Ce Zhang, Gerald J. Berry, Russ B. Altman, Christopher Ré, Daniel L. Rubin, Michael Snyder:
Predicting Non-Small Cell Lung Cancer Diagnosis and Prognosis by Fully Automated Microscopic Pathology Image Features. AMIA 2017 - [c71]Muthuraman Alagappan, Mary K. Goldstein, Steven M. Asch, Russ B. Altman, Jonathan H. Chen:
Decaying Relevance of Clinical Data when Predicting Future Decisions. CRI 2017 - [e22]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Marylyn D. Ritchie, Teri E. Klein:
Biocomputing 2017: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 3-7, 2017. 2017 [contents] - 2016
- [j90]Russ B. Altman:
Current Progress in Bioinformatics 2016. Briefings Bioinform. 17(1): 1 (2016) - [j89]Emily K. Mallory, Ce Zhang, Christopher Ré, Russ B. Altman:
Large-scale extraction of gene interactions from full-text literature using DeepDive. Bioinform. 32(1): 106-113 (2016) - [j88]Sara Hillenmeyer, Lea K. Davis, Eric R. Gamazon, Edwin H. Cook Jr., Nancy J. Cox, Russ B. Altman:
STAMS: STRING-assisted module search for genome wide association studies and application to autism. Bioinform. 32(24): 3815-3822 (2016) - [j87]Jonathan H. Chen, Tanya Podchiyska, Russ B. Altman:
OrderRex: clinical order decision support and outcome predictions by data-mining electronic medical records. J. Am. Medical Informatics Assoc. 23(2): 339-348 (2016) - [j86]Steven C. Bagley, Russ B. Altman:
Computing disease incidence, prevalence and comorbidity from electronic medical records. J. Biomed. Informatics 63: 108-111 (2016) - [j85]Steven C. Bagley, Marina Sirota, Richard O. Chen, Atul J. Butte, Russ B. Altman:
Constraints on Biological Mechanism from Disease Comorbidity Using Electronic Medical Records and Database of Genetic Variants. PLoS Comput. Biol. 12(4) (2016) - [c70]Jonathan H. Chen, Mary K. Goldstein, Steven M. Asch, Russ B. Altman:
Usability of an Automated Recommender System for Clinical Order Entry. AMIA 2016 - [c69]Jonathan H. Chen, Mary K. Goldstein, Steven M. Asch, Lester W. Mackey, Russ B. Altman:
Automated Organization of Electronic Health Record Data by Probabilistic Topic Modeling to Inform Clinical Decision Making. CRI 2016 - [c68]Anthony E. Solomonides, Russ B. Altman, Joshua C. Denny, Larry Ozeran, Jessica D. Tenenbaum:
The Many Meanings of Precision Medicine. CRI 2016 - [c67]Jonathan H. Chen, Mary K. Goldstein, Steven M. Asch, Russ B. Altman:
Dynamically Evolving Clinical Practices and Implications for Predicting Medical Decisions. PSB 2016: 195-206 - [c66]Yong Fuga Li, Fuxiao Xin, Russ B. Altman:
Separating the Causes and Consequences in Disease Transcriptome. PSB 2016: 381-392 - [e21]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein, Marylyn D. Ritchie:
Biocomputing 2016: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 4-8, 2016. 2016 [contents] - 2015
- [j84]Omri Mugzach, Mor Peleg, Steven C. Bagley, Stephen J. Guter, Edwin H. Cook Jr., Russ B. Altman:
An ontology for Autism Spectrum Disorder (ASD) to infer ASD phenotypes from Autism Diagnostic Interview-Revised data. J. Biomed. Informatics 56: 333-347 (2015) - [j83]Tianyun Liu, Russ B. Altman:
Relating Essential Proteins to Drug Side-Effects Using Canonical Component Analysis: A Structure-Based Approach. J. Chem. Inf. Model. 55(7): 1483-1494 (2015) - [j82]Weizhuang Zhou, Grace W. Tang, Russ B. Altman:
High Resolution Prediction of Calcium-Binding Sites in 3D Protein Structures Using FEATURE. J. Chem. Inf. Model. 55(8): 1663-1672 (2015) - [j81]Amanda Miguel, Jen Hsin, Tianyun Liu, Grace W. Tang, Russ B. Altman, Kerwyn Casey Huang:
Variations in the Binding Pocket of an Inhibitor of the Bacterial Division Protein FtsZ across Genotypes and Species. PLoS Comput. Biol. 11(3) (2015) - [j80]Bethany Percha, Russ B. Altman:
Learning the Structure of Biomedical Relationships from Unstructured Text. PLoS Comput. Biol. 11(7) (2015) - [c65]Darla Hewett, Michelle Whirl Carrillo, Lawrence E. Hunter, Russ B. Altman, Teri E. Klein:
A Twentieth Anniversary Tribute to PSB. Pacific Symposium on Biocomputing 2015: 1-7 - [c64]Kristine A. Pattin, Anna C. Greene, Russ B. Altman, Kevin Bretonnel Cohen, Elizabeth Wethington, Carsten Görg, Lawrence E. Hunter, Spencer V. Muse, Predrag Radivojac, Jason H. Moore:
Training the Next Generation of Quantitative Biologists in the Era of Big Data. Pacific Symposium on Biocomputing 2015: 488-492 - [e20]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein, Marylyn D. Ritchie:
Biocomputing 2015: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 4-8, 2015. 2015 [contents] - 2014
- [j79]Andrey Rzhetsky, Steven C. Bagley, Kanix Wang, Christopher S. Lyttle, Edwin H. Cook Jr., Russ B. Altman, Robert D. Gibbons:
Environmental and State-Level Regulatory Factors Affect the Incidence of Autism and Intellectual Disability. PLoS Comput. Biol. 10(3) (2014) - [j78]Grace W. Tang, Russ B. Altman:
Knowledge-based Fragment Binding Prediction. PLoS Comput. Biol. 10(4) (2014) - [c63]Jonathan H. Chen, Russ B. Altman:
"Doctors who ordered this also ordered..." Automated physician order recommendations and outcome predictions by data-mining electronic medical records. AMIA 2014 - [c62]Roxana Daneshjou, Zachary Zappala, Kimberly R. Kukurba, Sean M. Boyle, Kelly E. Ormond, Teri E. Klein, Michael Snyder, Carlos D. Bustamante, Russ B. Altman, Stephen B. Montgomery:
PATH-SCAN: A Reporting Tool for Identifying Clinically Actionable Variants. Pacific Symposium on Biocomputing 2014: 229-240 - [c61]Kristine A. Pattin, Anna C. Greene, Russ B. Altman, Lawrence E. Hunter, David A. Ross, James A. Foster, Jason H. Moore:
Building the Next Generation of Quantitative Biologists. Pacific Symposium on Biocomputing 2014: 417-421 - [e19]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein, Marylyn D. Ritchie:
Biocomputing 2014: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 3-7, 2014. 2014 [contents] - 2013
- [j77]Ryen W. White, Nicholas P. Tatonetti, Nigam H. Shah, Russ B. Altman, Eric Horvitz:
Web-scale pharmacovigilance: listening to signals from the crowd. J. Am. Medical Informatics Assoc. 20(3): 404-408 (2013) - [j76]Nicholas P. Tatonetti, Joshua C. Denny, Russ B. Altman:
Correspondence: Response to 'Use of an algorithm for identifying hidden drug-drug interactions in adverse event reports' by Gooden et al. J. Am. Medical Informatics Assoc. 20(3): 591 (2013) - [j75]Guy Haskin Fernald, Russ B. Altman:
Using Molecular Features of Xenobiotics to Predict Hepatic Gene Expression Response. J. Chem. Inf. Model. 53(10): 2765-2773 (2013) - [j74]Kai J. Kohlhoff, Vijay S. Pande, Russ B. Altman:
K-Means for Parallel Architectures Using All-Prefix-Sum Sorting and Updating Steps. IEEE Trans. Parallel Distributed Syst. 24(8): 1602-1612 (2013) - [c60]Omri Mugzach, Mor Peleg, Steven C. Bagley, Russ B. Altman:
Expanding the Autism Ontology to DSM-IV Criteria. AMIA 2013 - [c59]Bethany Percha, Russ B. Altman:
Inferring the semantic relationships of words within an ontology using random indexing: applications to pharmacogenomics. AMIA 2013 - [e18]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, Teri E. Klein:
Biocomputing 2013: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 3-7, 2013. World Scientific Publishing 2013, ISBN 978-1-62748-016-1 [contents] - [i2]Russ B. Altman, Cheng Che Chen, William B. Poland, Jaswinder Pal Singh:
Probabilistic Constraint Satisfaction with Non-Gaussian Noise. CoRR abs/1302.6780 (2013) - [i1]Russ B. Altman:
A Probabilistic Algorithm for Calculating Structure: Borrowing from Simulated Annealing. CoRR abs/1303.1456 (2013) - 2012
- [j73]Russ B. Altman:
Editorial: Current progress in Bioinformatics 2012. Briefings Bioinform. 13(4): 393-394 (2012) - [j72]Fabio Rinaldi, Simon Clematide, Yael Garten, Michelle Whirl Carrillo, Li Gong, Joan M. Hebert, Katrin Sangkuhl, Caroline F. Thorn, Teri E. Klein, Russ B. Altman:
Using ODIN for a PharmGKB revalidation experiment. Database J. Biol. Databases Curation 2012 (2012) - [j71]Nicholas P. Tatonetti, Guy Haskin Fernald, Russ B. Altman:
A novel signal detection algorithm for identifying hidden drug-drug interactions in adverse event reports. J. Am. Medical Informatics Assoc. 19(1): 79-85 (2012) - [j70]Scott L. Delp, Joy P. Ku, Vijay S. Pande, Michael A. Sherman, Russ B. Altman:
Simbios: an NIH national center for physics-based simulation of biological structures. J. Am. Medical Informatics Assoc. 19(2): 186-189 (2012) - [j69]Adrien Coulet, K. Bretonnel Cohen, Russ B. Altman:
The state of the art in text mining and natural language processing for pharmacogenomics. J. Biomed. Informatics 45(5): 825-826 (2012) - [j68]Russ B. Altman:
Introduction to Translational Bioinformatics Collection. PLoS Comput. Biol. 8(12) (2012) - [j67]Konrad J. Karczewski, Roxana Daneshjou, Russ B. Altman:
Chapter 7: Pharmacogenomics. PLoS Comput. Biol. 8(12) (2012) - [c58]Konrad J. Karczewski, Robert P. Tirrell, Pablo Cordero, Nicholas P. Tatonetti, Joel T. Dudley, Keyan Salari, Michael Snyder, Russ B. Altman, Stuart K. Kim:
Interpretome: A Freely Available, Modular, and Secure Personal Genome Interpretation Engine. Pacific Symposium on Biocomputing 2012: 339-350 - [c57]Bethany Percha, Yael Garten, Russ B. Altman:
Discovery and Explanation of Drug-Drug Interactions via Text Mining. Pacific Symposium on Biocomputing 2012: 410-421 - [c56]Marylyn D. Ritchie, Nancy J. Cox, Cheng Cheng, Scott Weiss, Teri E. Klein, Russ B. Altman:
Systems Pharmacogenomics-Bridging the Gap. Pacific Symposium on Biocomputing 2012: 442 - [e17]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, Teri E. Klein:
Biocomputing 2012: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 3-7, 2012. World Scientific Publishing 2012, ISBN 978-1-61839-811-6 [contents] - 2011
- [j66]Guy Haskin Fernald, Emidio Capriotti, Roxana Daneshjou, Konrad J. Karczewski, Russ B. Altman:
Genome Analysis. Bioinform. 27(13): 1741-1748 (2011) - [j65]Kai J. Kohlhoff, Marc H. Sosnick, William T. Hsu, Vijay S. Pande, Russ B. Altman:
CAMPAIGN: an open-source library of GPU-accelerated data clustering algorithms. Bioinform. 27(16): 2321-2322 (2011) - [j64]Guy Haskin Fernald, Emidio Capriotti, Roxana Daneshjou, Konrad J. Karczewski, Russ B. Altman:
Bioinformatics challenges for personalized medicine. Bioinform. 27(16): 2323 (2011) - [j63]Adrien Coulet, Yael Garten, Michel Dumontier, Russ B. Altman, Mark A. Musen, Nigam H. Shah:
Integration and publication of heterogeneous text-mined relationships on the Semantic Web. J. Biomed. Semant. 2(S-2): S10 (2011) - [j62]Emidio Capriotti, Russ B. Altman:
Improving the prediction of disease-related variants using protein three-dimensional structure. BMC Bioinform. 12(S-4): S3 (2011) - [j61]Russ B. Altman, Katharine S. Miller:
2010 Translational bioinformatics year in review. J. Am. Medical Informatics Assoc. 18(4): 358-366 (2011) - [j60]Tianyun Liu, Russ B. Altman:
Using Multiple Microenvironments to Find Similar Ligand-Binding Sites: Application to Kinase Inhibitor Binding. PLoS Comput. Biol. 7(12) (2011) - [j59]Samuel Coulbourn Flores, Michael A. Sherman, Christopher M. Bruns, Peter Eastman, Russ B. Altman:
Fast Flexible Modeling of RNA Structure Using Internal Coordinates. IEEE ACM Trans. Comput. Biol. Bioinform. 8(5): 1247-1257 (2011) - [c55]Samuel Coulbourn Flores, Russ B. Altman:
Structural insights into Pre-Translocation Ribosome Motions. Pacific Symposium on Biocomputing 2011: 205-216 - [e16]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, Teri E. Klein:
Biocomputing 2011: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, 3-7 January 2011. World Scientific Publishing 2011, ISBN 978-981-4335-04-1 [contents] - 2010
- [j58]Russ B. Altman:
Editorial: Current progress in Bioinformatics 2010. Briefings Bioinform. 11(1): 1-2 (2010) - [j57]Jesse M. Engreitz, Alexander A. Morgan, Joel Dudley, Rong Chen, Rahul Thathoo, Russ B. Altman, Atul J. Butte:
Content-based microarray search using differential expression profiles. BMC Bioinform. 11: 603 (2010) - [j56]Nicholas P. Tatonetti, Joel Dudley, Hersh Sagreiya, Atul J. Butte, Russ B. Altman:
An integrative method for scoring candidate genes from association studies: application to warfarin dosing. BMC Bioinform. 11(S-9): S9 (2010) - [j55]Hersh Sagreiya, Russ B. Altman:
The utility of general purpose versus specialty clinical databases for research: Warfarin dose estimation from extracted clinical variables. J. Biomed. Informatics 43(5): 747-751 (2010) - [j54]Jesse M. Engreitz, Bernie J. Daigle Jr., Jonathan J. Marshall, Russ B. Altman:
Independent component analysis: Mining microarray data for fundamental human gene expression modules. J. Biomed. Informatics 43(6): 932-944 (2010) - [j53]Adrien Coulet, Nigam H. Shah, Yael Garten, Mark A. Musen, Russ B. Altman:
Using text to build semantic networks for pharmacogenomics. J. Biomed. Informatics 43(6): 1009-1019 (2010) - [j52]Bernie J. Daigle Jr., Alicia Deng, Tracey McLaughlin, Samuel W. Cushman, Margaret C. Cam, Gerald Reaven, Philip S. Tsao, Russ B. Altman:
Using Pre-existing Microarray Datasets to Increase Experimental Power: Application to Insulin Resistance. PLoS Comput. Biol. 6(3) (2010) - [c54]Samuel Flores, Yaqi Wan, Rick Russell, Russ B. Altman:
Predicting RNA Structure by Multiple Template Homology Modeling. Pacific Symposium on Biocomputing 2010: 216-227 - [c53]Yael Garten, Nicholas P. Tatonetti, Russ B. Altman:
Improving the Prediction of Pharmacogenes Using Text-Derived Gene-Drug Relationships. Pacific Symposium on Biocomputing 2010: 305-314 - [c52]Adrien Coulet, Nigam H. Shah, Lawrence Hunter, Chitta Baral, Russ B. Altman:
Extraction of Genotype-Phenotype-Drug Relationships from Text: From Entity Recognition to Bioinformatics Application. Pacific Symposium on Biocomputing 2010: 485-487 - [e15]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, Teri E. Klein:
Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010. World Scientific Publishing 2010, ISBN 978-981-4295-29-1 [contents]
2000 – 2009
- 2009
- [j51]Magdalena A. Jonikas, Randall J. Radmer, Russ B. Altman:
Knowledge-based instantiation of full atomic detail into coarse-grain RNA 3D structural models. Bioinform. 25(24): 3259-3266 (2009) - [j50]Yael Garten, Russ B. Altman:
Pharmspresso: a text mining tool for extraction of pharmacogenomic concepts and relationships from full text. BMC Bioinform. 10(S-2) (2009) - [c51]Robert G. Turcott, Hersh Sagreiya, Euan A. Ashley, Russ B. Altman, Amar K. Das:
A General Framework for Dose Optimization. AMIA 2009 - [c50]Shai Shen-Orr, Ofir Goldberger, Yael Garten, Yael Rosenberg-Hasson, Patricia A. Lovelace, David L. Hirschberg, Russ B. Altman, Mark M. Davis, Atul J. Butte:
Towards a Cytokine-Cell Interaction Knowledgebase of the Adaptive Immune System. Pacific Symposium on Biocomputing 2009: 439-450 - [e14]Doheon Lee, Russ B. Altman, Min Song, Jun Huan:
Proceeding of the 3rd International Workshop on Data and Text Mining in Bioinformatics, DTMBIO 2009, Hong Kong, China, November 6, 2009. ACM 2009, ISBN 978-1-60558-803-2 [contents] - [e13]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, Teri E. Klein:
Biocomputing 2009: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, 5-9 January 2009. 2009, ISBN 978-981-283-692-2 [contents] - 2008
- [j49]Bernie J. Daigle Jr., Russ B. Altman:
M-BISON: Microarray-based integration of data sources using networks. BMC Bioinform. 9 (2008) - [j48]Graham L. Poulter, Daniel L. Rubin, Russ B. Altman, Cathal Seoighe:
MScanner: a classifier for retrieving Medline citations. BMC Bioinform. 9 (2008) - [j47]Tina Hernandez-Boussard, Michelle Whirl Carrillo, Joan M. Hebert, Li Gong, Ryan Owen, Mei Gong, Winston Gor, Feng Liu, Chuong Truong, Ryan Whaley, Mark Woon, Tina Zhou, Russ B. Altman, Teri E. Klein:
The pharmacogenetics and pharmacogenomics knowledge base: accentuating the knowledge. Nucleic Acids Res. 36(Database-Issue): 913-918 (2008) - [j46]Jeanette P. Schmidt, Scott L. Delp, Michael A. Sherman, Charles A. Taylor, Vijay S. Pande, Russ B. Altman:
The Simbios National Center: Systems Biology in Motion. Proc. IEEE 96(8): 1266-1280 (2008) - [j45]Peggy Yao, Ankur Dhanik, Nathan Marz, Ryan Propper, Charles Kou, Guanfeng Liu, Henry van den Bedem, Jean-Claude Latombe, Inbal Halperin-Landsberg, Russ B. Altman:
Efficient Algorithms to Explore Conformation Spaces of Flexible Protein Loops. IEEE ACM Trans. Comput. Biol. Bioinform. 5(4): 534-545 (2008) - [c49]Russ B. Altman:
Text mining for pharmacogenomics. DTMBIO 2008: 1-2 - [c48]Dariya S. Glazer, Randall J. Radmer, Russ B. Altman:
Combining Molecular Dynamics and Machine Learning to Improve Protein Function Recognition. Pacific Symposium on Biocomputing 2008: 332-343 - [e12]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, Teri E. Klein:
Biocomputing 2008, Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, 4-8 January 2008. World Scientific 2008, ISBN 978-981-277-608-2 [contents] - 2007
- [j44]Russ B. Altman:
Current progress in bioinformatics 2007. Briefings Bioinform. 8(5): 277-278 (2007) - [j43]Sungroh Yoon, Jessica C. Ebert, Eui-Young Chung, Giovanni De Micheli, Russ B. Altman:
Clustering protein environments for function prediction: finding PROSITE motifs in 3D. BMC Bioinform. 8(S-4) (2007) - [j42]Russ B. Altman, Teri E. Klein:
Biomedical informatics training at Stanford in the 21st century. J. Biomed. Informatics 40(1): 55-58 (2007) - [j41]Lawrence Hunter