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ORCIDBrooke L. Fridley
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2020 – today
- 2022
[j9]Christopher M. Wilson
, Alex C. Soupir, Ram Thapa, Jordan H. Creed, Jonathan Nguyen, Carlos Moran Segura, Travis A. Gerke, Joellen M. Schildkraut, Lauren C. Peres, Brooke L. Fridley:
Tumor immune cell clustering and its association with survival in African American women with ovarian cancer. PLoS Comput. Biol. 18(3) (2022)- 2021
- [j8]Jordan H. Creed, Christopher M. Wilson, Alex C. Soupir, Christelle M. Colin-Leitzinger, Gregory J. Kimmel, Oscar E. Ospina, Nicholas H. Chakiryan, Joseph Markowitz, Lauren C. Peres, Anna Coghill, Brooke L. Fridley:
spatialTIME and iTIME: R package and Shiny application for visualization and analysis of immunofluorescence data. Bioinform. 37(23): 4584-4586 (2021) - 2020
- [j7]Qian Li, Kate Fisher, Wenjun Meng, Bin Fang, Eric A. Welsh, Eric B. Haura, John M. Koomen, Steven A. Eschrich, Brooke L. Fridley, Yian Ann Chen:
GMSimpute: a generalized two-step Lasso approach to impute missing values in label-free mass spectrum analysis. Bioinform. 36(1): 257-263 (2020) - [j6]Prabhakar Chalise, Yonghui Ni, Brooke L. Fridley:
Network-based integrative clustering of multiple types of genomic data using non-negative matrix factorization. Comput. Biol. Medicine 118: 103625 (2020)
2010 – 2019
- 2018
- [j5]Qian Li, Janelle R. Noel-MacDonnell, Devin C. Koestler, Ellen L. Goode, Brooke L. Fridley:
Subject level clustering using a negative binomial model for small transcriptomic studies. BMC Bioinform. 19(1): 474:1-474:10 (2018) - 2016
- [j4]Prabhakar Chalise, Rama Raghavan, Brooke L. Fridley:
InterSIM: Simulation tool for multiple integrative 'omic datasets'. Comput. Methods Programs Biomed. 128: 69-74 (2016) - [i1]Richard Meier, Stefan Graw, Joseph Usset, Rama Raghavan, Junqiang Dai, Prabhakar Chalise, Shellie Ellis, Brooke L. Fridley, Devin C. Koestler:
An ensemble-based Cox proportional hazards regression framework for predicting survival in metastatic castration-resistant prostate cancer (mCRPC) patients. F1000Research 5: 2677 (2016) - 2013
- [j3]Nicholas B. Larson, Brooke L. Fridley:
PurBayes: estimating tumor cellularity and subclonality in next-generation sequencing data. Bioinform. 29(15): 1888-1889 (2013) - 2012
- [j2]Prabhakar Chalise, Brooke L. Fridley:
Comparison of penalty functions for sparse canonical correlation analysis. Comput. Stat. Data Anal. 56(2): 245-254 (2012) - [c1]Emily Rose Holzinger, Scott M. Dudek, Alex T. Frase, Brooke L. Fridley, Prabhakar Chalise, Marylyn D. Ritchie:
Comparison of Methods for Meta-dimensional Data Analysis Using in Silico and Biological Data Sets. EvoBIO 2012: 134-143
2000 – 2009
- 2008
- [j1]Brooke L. Fridley, Stephen T. Turner, Arlene B. Chapman, Andrei S. Rodin, Eric Boerwinkle, Kent R. Bailey:
Reproducibility of genotypes as measured by the affymetrix GeneChip® 100K Human Mapping Array set. Comput. Stat. Data Anal. 52(12): 5367-5374 (2008)
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