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John C. Braisted
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2020 – today
- 2023
- [j6]John C. Braisted
, Andrew Patt, Cole Tindall, Timothy Sheils, Jorge Neyra, Kyle Spencer
, Tara Eicher
, Ewy A Mathé:
RaMP-DB 2.0: a renovated knowledgebase for deriving biological and chemical insight from metabolites, proteins, and genes. Bioinform. 39(1) (2023) - [j5]Bryan Queme
, John C. Braisted
, Patricia Dranchak
, James Inglese
:
qHTSWaterfall: 3-dimensional visualization software for quantitative high-throughput screening (qHTS) data. J. Cheminformatics 15(1): 39 (2023) - 2021
- [j4]Gregory J. Tawa
, John C. Braisted, David Gerhold
, Gurmit Grewal, Christina Mazcko, Matthew Breen, Gurusingham Sittampalam
, Amy K. LeBlanc
:
Transcriptomic profiling in canines and humans reveals cancer specific gene modules and biological mechanisms common to both species. PLoS Comput. Biol. 17(9) (2021)
2010 – 2019
- 2015
- [j3]E. A. Howe, Andrea de Souza, David L. Lahr, S. Chatwin, Philip Montgomery
, B. R. Alexander, Dac-Trung Nguyen
, Yasel Cruz, D. A. Stonich, G. Walzer, J. T. Rose
, S. C. Picard
, Zihan Liu
, Jamie N. Rose
, X. Xiang, Jacob K. Asiedu, D. Durkin, J. Levine, J. J. Yang, Stephan C. Schürer, John C. Braisted, Noel Southall
, Mark R. Southern, T. D. Y. Chung, Steve Brudz
, C. Tanega, Stuart L. Schreiber, Joshua A. Bittker, Rajarshi Guha
, Paul A. Clemons:
BioAssay Research Database (BARD): chemical biology and probe-development enabled by structured metadata and result types. Nucleic Acids Res. 43(Database-Issue): 1163-1170 (2015) - 2012
- [j2]Thomas W. Chittenden, Eleanor Howe, Jennifer M. Taylor, Jessica Cara Mar
, Martin J. Aryee, Harold Gómez, Razvan Sultana, John C. Braisted, Sarita J. Nair, John Quackenbush
, Chris Holmes:
nEASE: a method for gene ontology subclassification of high-throughput gene expression data. Bioinform. 28(5): 726-728 (2012)
2000 – 2009
- 2008
- [j1]John C. Braisted, Srilatha Kuntumalla, Christine Vogel, Edward M. Marcotte
, Alan R. Rodrigues, Rong Wang, Shih-Ting Huang, Erik S. Ferlanti, Alexander I. Saeed, Robert D. Fleischmann, Scott N. Peterson, Rembert Pieper:
The APEX Quantitative Proteomics Tool: Generating protein quantitation estimates from LC-MS/MS proteomics results. BMC Bioinform. 9 (2008)
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