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Journal Articles
- 2016
[j8]Daniele Catanzaro
, Stanley E. Shackney, Alejandro A. Schäffer, Russell Schwartz:
Classifying the Progression of Ductal Carcinoma from Single-Cell Sampled Data via Integer Linear Programming: A Case Study. IEEE ACM Trans. Comput. Biol. Bioinform. 13(4): 643-655 (2016)- 2014
- [j7]Salim Akhter Chowdhury, Stanley E. Shackney, Kerstin Heselmeyer-Haddad, Thomas Ried, Alejandro A. Schäffer, Russell Schwartz:
Algorithms to Model Single Gene, Single Chromosome, and Whole Genome Copy Number Changes Jointly in Tumor Phylogenetics. PLoS Comput. Biol. 10(7) (2014) - 2013
- [j6]Salim Akhter Chowdhury, Stanley Shackney, Kerstin Heselmeyer-Haddad, Thomas Ried, Alejandro A. Schäffer, Russell Schwartz:
Phylogenetic analysis of multiprobe fluorescence in situ hybridization data from tumor cell populations. Bioinform. 29(13): 189-198 (2013) - [j5]Ayshwarya Subramanian, Stanley Shackney, Russell Schwartz:
Novel Multisample Scheme for Inferring Phylogenetic Markers from Whole Genome Tumor Profiles. IEEE ACM Trans. Comput. Biol. Bioinform. 10(6): 1422-1431 (2013) - 2010
- [j4]David Tolliver, Charalampos E. Tsourakakis, Ayshwarya Subramanian, Stanley Shackney, Russell Schwartz:
Robust unmixing of tumor states in array comparative genomic hybridization data. Bioinform. 26(12): 106-114 (2010) - [j3]Russell Schwartz, Stanley Shackney:
Applying unmixing to gene expression data for tumor phylogeny inference. BMC Bioinform. 11: 42 (2010) - 2009
- [j2]Yongjin Park, Stanley Shackney, Russell Schwartz:
Network-Based Inference of Cancer Progression from Microarray Data. IEEE ACM Trans. Comput. Biol. Bioinform. 6(2): 200-212 (2009) - 2007
- [j1]Gregory Pennington, Charles A. Smith, Stanley Shackney, Russell Schwartz:
Reconstructing Tumor phylogenies from Heterogeneous Single-Cell Data. J. Bioinform. Comput. Biol. 5(2a): 407-427 (2007)
Conference and Workshop Papers
- 2012
- [c3]Ayshwarya Subramanian, Stanley Shackney, Russell Schwartz:
Novel Multi-sample Scheme for Inferring Phylogenetic Markers from Whole Genome Tumor Profiles. ISBRA 2012: 250-262 - 2011
- [c2]Ayshwarya Subramanian, Stanley Shackney, Russell Schwartz:
Inference of tumor phylogenies from genomic assays on heterogeneous samples. BCB 2011: 172-181 - 2008
- [c1]Yongjin Park, Stanley Shackney, Russell Schwartz:
Network-Based Inference of Cancer Progression from Microarray Data. ISBRA 2008: 268-279
Coauthor Index
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