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Nima Aghaeepour
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2020 – today
- 2025
- [j16]Arvind Veluvali, Ashkan Dehghani Zahedani, Amir Hosseinian, Nima Aghaeepour, Tracey McLaughlin, Mark Woodward, Alex Ditullio, Noosheen Hashemi, Michael P. Snyder:
Impact of digital health interventions on glycemic control and weight management. npj Digit. Medicine 8(1) (2025) - 2024
- [j15]David Seong
, Samson Mataraso, Camilo Espinosa, Eloïse Berson, S. Momsen Reincke, Lei Xue, Chloe Kashiwagi, Yeasul Kim, Chi-Hung Shu, Philip Chung, Marc Ghanem, Feng Xie, Ronald J. Wong, Martin S. Angst, Brice Gaudilliere, Gary M. Shaw, David K. Stevenson, Nima Aghaeepour:
Generating pregnant patient biological profiles by deconvoluting clinical records with electronic health record foundation models. Briefings Bioinform. 25(6) (2024) - [j14]Ashkan Dehghani Zahedani, Tracey McLaughlin, Arvind Veluvali, Nima Aghaeepour, Amir Hosseinian, Saransh Agarwal, Jingyi Ruan, Shital Tripathi, Mark Woodward, Noosheen Hashemi, Michael Snyder
:
Correction: Digital health application integrating wearable data and behavioral patterns improves metabolic health. npj Digit. Medicine 7(1) (2024) - [c3]Scott L. Fleming, Alejandro Lozano, William J. Haberkorn, Jenelle A. Jindal, Eduardo Pontes Reis, Rahul Thapa, Louis Blankemeier, Julian Z. Genkins, Ethan Steinberg, Ashwin Nayak, Birju S. Patel, Chia-Chun Chiang, Alison Callahan, Zepeng Huo, Sergios Gatidis, Scott J. Adams, Oluseyi Fayanju, Shreya J. Shah, Thomas Savage, Ethan Goh, Akshay S. Chaudhari, Nima Aghaeepour, Christopher D. Sharp, Michael A. Pfeffer, Percy Liang, Jonathan H. Chen, Keith E. Morse, Emma P. Brunskill, Jason A. Fries, Nigam H. Shah:
MedAlign: A Clinician-Generated Dataset for Instruction Following with Electronic Medical Records. AAAI 2024: 22021-22030 - [i3]Philip Chung, Christine T. Fong, Andrew M. Walters, Nima Aghaeepour, Meliha Yetisgen, Vikas N. O'Reilly-Shah:
Large Language Model Capabilities in Perioperative Risk Prediction and Prognostication. CoRR abs/2401.01620 (2024) - 2023
- [j13]Martin Becker
, Huda Nassar, Camilo Espinosa
, Ina A. Stelzer
, Dorien Feyaerts
, Eloïse Berson
, Neda Hajiakhoond Bidoki, Alan L. Chang, Geetha Saarunya
, Anthony Culos, Davide De Francesco, Ramin Fallahzadeh, Qun Liu, Yeasul Kim
, Ivana Maric
, Samson Mataraso, Seyedeh Neelufar Payrovnaziri, Thanaphong Phongpreecha
, Neal G. Ravindra, Natalie Stanley, Sayane Shome, Yuqi Tan
, Melan Thuraiappah, Maria Xenochristou, Lei Xue, Gary M. Shaw
, David K. Stevenson, Martin S. Angst
, Brice Gaudilliere, Nima Aghaeepour:
Large-scale correlation network construction for unraveling the coordination of complex biological systems. Nat. Comput. Sci. 3(4): 346-359 (2023) - [j12]Neal G. Ravindra
, Camilo Espinosa
, Eloïse Berson
, Thanaphong Phongpreecha
, Peinan Zhao, Martin Becker
, Alan L. Chang, Sayane Shome, Ivana Maric
, Davide De Francesco, Samson Mataraso, Geetha Saarunya
, Melan Thuraiappah, Lei Xue, Brice Gaudilliere
, Martin S. Angst
, Gary M. Shaw
, Erik D. Herzog, David K. Stevenson, Sarah K. England
, Nima Aghaeepour
:
Deep representation learning identifies associations between physical activity and sleep patterns during pregnancy and prematurity. npj Digit. Medicine 6 (2023) - [j11]Ashkan Dehghani Zahedani, Arvind Veluvali, Tracey McLaughlin, Nima Aghaeepour, Amir Hosseinian, Saransh Agarwal, Jingyi Ruan, Shital Tripathi, Mark Woodward, Noosheen Hashemi, Michael Snyder
:
Digital health application integrating wearable data and behavioral patterns improves metabolic health. npj Digit. Medicine 6 (2023) - [i2]Scott L. Fleming, Alejandro Lozano, William J. Haberkorn, Jenelle A. Jindal, Eduardo Pontes Reis, Rahul Thapa, Louis Blankemeier, Julian Z. Genkins, Ethan Steinberg, Ashwin Nayak
, Birju S. Patel, Chia-Chun Chiang, Alison Callahan, Zepeng Huo, Sergios Gatidis, Scott J. Adams, Oluseyi Fayanju, Shreya J. Shah, Thomas Savage, Ethan Goh, Akshay S. Chaudhari, Nima Aghaeepour, Christopher D. Sharp, Michael A. Pfeffer, Percy Liang, Jonathan H. Chen, Keith E. Morse, Emma P. Brunskill, Jason A. Fries, Nigam H. Shah:
MedAlign: A Clinician-Generated Dataset for Instruction Following with Electronic Medical Records. CoRR abs/2308.14089 (2023) - 2022
- [j10]Ivana Maric
, Kévin Contrepois, Mira N. Moufarrej, Ina A. Stelzer
, Dorien Feyaerts
, Xiaoyuan Han, Andy Tang, Natalie Stanley, Ronald J. Wong, Gavin M. Traber, Mathew Ellenberger, Alan L. Chang, Ramin Fallahzadeh, Huda Nassar, Martin Becker
, Maria Xenochristou, Camilo Espinosa, Davide De Francesco
, Mohammad S. Ghaemi, Elizabeth K. Costello, Anthony Culos, Xuefeng Bruce Ling
, Karl G. Sylvester
, Gary L. Darmstadt
, Virginia D. Winn
, Gary M. Shaw
, David A. Relman
, Stephen R. Quake, Martin S. Angst
, Michael P. Snyder
, David K. Stevenson, Brice Gaudilliere, Nima Aghaeepour:
Early prediction and longitudinal modeling of preeclampsia from multiomics. Patterns 3(12): 100655 (2022) - 2021
- [j9]Hootan Rashtian
, Solmaz Shariat Torbaghan, Salar Rahili
, Michael P. Snyder, Nima Aghaeepour:
Heart Rate and CGM Feature Representation Diabetes Detection From Heart Rate: Learning Joint Features of Heart Rate and Continuous Glucose Monitors Yields Better Representations. IEEE Access 9: 83234-83240 (2021) - 2020
- [j8]Anthony Culos
, Amy Tsai
, Natalie Stanley, Martin Becker
, Mohammad Sajjad Ghaemi, David Mcilwain, Ramin Fallahzadeh, Athena Tanada, Huda Nassar, Camilo Espinosa
, Maria Xenochristou, Edward Ganio, Laura Peterson
, Xiaoyuan Han
, Ina A. Stelzer
, Kazuo Ando
, Dyani Gaudilliere
, Thanaphong Phongpreecha
, Ivana Maric
, Alan L. Chang, Gary M. Shaw
, David K. Stevenson, Sean Bendall
, Kara L. Davis
, Wendy J. Fantl, Garry P. Nolan
, Trevor Hastie
, Robert Tibshirani, Martin S. Angst
, Brice Gaudilliere
, Nima Aghaeepour
:
Integration of mechanistic immunological knowledge into a machine learning pipeline improves predictions. Nat. Mach. Intell. 2(10): 619-628 (2020) - [i1]J. Kenneth Tay, Nima Aghaeepour, Trevor Hastie, Robert Tibshirani:
Feature-weighted elastic net: using "features of features" for better prediction. CoRR abs/2006.01395 (2020)
2010 – 2019
- 2019
- [j7]Mohammad Sajjad Ghaemi, Daniel B. DiGiulio, Kévin Contrepois, Benjamin J. Callahan
, Thuy T. M. Ngo, Brittany Lee-McMullen, Benoit Lehallier, Anna Robaczewska, David Mcilwain, Yael Rosenberg-Hasson, Ronald J. Wong, Cecele Quaintance, Anthony Culos, Natalie Stanley, Athena Tanada, Amy Tsai
, Dyani Gaudilliere
, Edward Ganio, Xiaoyuan Han, Kazuo Ando
, Leslie McNeil, Martha Tingle, Paul H. Wise, Ivana Maric, Marina Sirota, Tony Wyss-Coray
, Virginia D. Winn
, Maurice L. Druzin
, Ronald Gibbs, Gary L. Darmstadt
, David B. Lewis, Vahid Partovi Nia
, Bruno Agard
, Robert Tibshirani, Garry P. Nolan, Michael P. Snyder
, David A. Relman, Stephen R. Quake, Gary M. Shaw
, David K. Stevenson, Martin S. Angst, Brice Gaudilliere, Nima Aghaeepour:
Multiomics modeling of the immunome, transcriptome, microbiome, proteome and metabolome adaptations during human pregnancy. Bioinform. 35(1): 95-103 (2019) - 2018
- [j6]Nima Aghaeepour, Erin F. Simonds, David J. H. F. Knapp
, Robert V. Bruggner, Karen Sachs, Anthony Culos, Pier Federico Gherardini, Nikolay Samusik, Gabriela K. Fragiadakis, Sean Bendall, Brice Gaudilliere, Martin S. Angst, Connie J. Eaves
, William A. Weiss
, Wendy J. Fantl, Garry P. Nolan
:
GateFinder: projection-based gating strategy optimization for flow and mass cytometry. Bioinform. 34(23): 4131-4133 (2018) - 2017
- [c2]Nikolay Samusik, Nima Aghaeepour, Sean Bendall:
Session Introduction. PSB 2017: 557-563 - 2015
- [j5]Kieran O'Neill
, Nima Aghaeepour, Jeremy Parker
, Donna Hogge
, Aly Karsan, Bakul Dalal, Ryan Remy Brinkman:
Deep profiling of multitube flow cytometry data. Bioinform. 31(10): 1623-1631 (2015) - 2014
- [j4]Kieran O'Neill
, Adrin Jalali, Nima Aghaeepour, Holger H. Hoos
, Ryan Remy Brinkman:
Enhanced flowType/RchyOptimyx: a Bioconductor pipeline for discovery in high-dimensional cytometry data. Bioinform. 30(9): 1329-1330 (2014) - 2013
- [j3]Nima Aghaeepour, Holger H. Hoos
:
Ensemble-based prediction of RNA secondary structures. BMC Bioinform. 14: 139 (2013) - [j2]Kieran O'Neill
, Nima Aghaeepour, Josef Spidlen, Ryan Remy Brinkman:
Flow Cytometry Bioinformatics. PLoS Comput. Biol. 9(12) (2013) - 2012
- [j1]Nima Aghaeepour, Pratip K. Chattopadhyay
, Anuradha Ganesan, Kieran O'Neill
, Habil Zare
, Adrin Jalali, Holger H. Hoos
, Mario Roederer, Ryan Remy Brinkman:
Early immunologic correlates of HIV protection can be identified from computational analysis of complex multivariate T-cell flow cytometry assays. Bioinform. 28(7): 1009-1016 (2012)
2000 – 2009
- 2009
- [p1]Bahman Yari Saeed Khanloo, Daryanaz Dargahi, Nima Aghaeepour, Ali Masoudi-Nejad
:
Support Vector Clustering: From Local Constraint to Global Stability. Foundations of Computational Intelligence (6) 2009: 209-227 - 2005
- [c1]HesamAddin Dashti, Nima Aghaeepour, Sahar Asadi
, Meysam Bastani, Zahra Delafkar, Fatemeh Miri Disfani, Serveh Ghaderi, Shahin Kamali, Sepideh Pashami, Alireza Siahpirani:
Dynamic Positioning Based on Voronoi Cells (DPVC). RoboCup 2005: 219-229
Coauthor Index

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last updated on 2025-02-05 20:27 CET by the dblp team
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