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Michela Taufer
Person information
- affiliation: University of Tennesee, Knoxville, Knoxville, TN, USA
- affiliation: University of Delaware, USA
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2020 – today
- 2024
- [j53]Michela Taufer
, Daniel Milroy
, Todd Gamblin
, Andrew Jones
, Bill Magro, Heidi Poxon
, Seetharami R. Seelam:
HPC and Cloud Convergence Beyond Technical Boundaries: Strategies for Economic Sustainability, Standardization, and Data Accessibility. Computer 57(6): 128-136 (2024) - [j52]Michela Taufer:
Recognition of best paper, outstanding editors, and outstanding reviewers for Future Generation Computer Systems in 2023. Future Gener. Comput. Syst. 155: 463-464 (2024) - [j51]Connor Scully-Allison
, Ian Lumsden
, Katy Williams
, Jesse Bartels
, Michela Taufer
, Stephanie Brink
, Abhinav Bhatele
, Olga Pearce
, Katherine E. Isaacs
:
Design Concerns for Integrated Scripting and Interactive Visualization in Notebook Environments. IEEE Trans. Vis. Comput. Graph. 30(9): 6572-6585 (2024) - [c129]Ian Lumsden, Hariharan Devarajan, Jack Marquez, Stephanie Brink, David Böhme, Olga Pearce, Jae-Seung Yeom, Michela Taufer:
Empirical Study of Molecular Dynamics Workflow Data Movement: DYAD vs. Traditional I/O Systems. IPDPS (Workshops) 2024: 543-553 - 2023
- [j50]Tu Mai Anh Do
, Loïc Pottier
, Rafael Ferreira da Silva
, Silvina Caíno-Lores, Michela Taufer, Ewa Deelman:
Performance assessment of ensembles of in situ workflows under resource constraints. Concurr. Comput. Pract. Exp. 35(20) (2023) - [j49]Michela Taufer
, Heberth F. Martinez
, Jakob Lüttgau
, Lauren Whitnah
, Giorgio Scorzelli
, Pania Newell
, Aashish Panta
, Peer-Timo Bremer
, Douglas Fils
, Christine R. Kirkpatrick
, Valerio Pascucci
:
Enhancing Scientific Research with FAIR Digital Objects in the National Science Data Fabric. Comput. Sci. Eng. 25(5): 39-47 (2023) - [j48]Chaitanya Afle
, Patrick R. Miles
, Silvina Caíno-Lores
, Collin D. Capano
, Ingo Tews
, Karan Vahi
, Ewa Deelman
, Michela Taufer
, Duncan A. Brown
:
Reproducing the Results for Neutron Star Interior Composition Explorer Observation of PSR J0030 + 0451. Comput. Sci. Eng. 25(6): 16-26 (2023) - [j47]Michela Taufer:
Recognition of Outstanding Future Generation Computer Systems Reviewers for 2022. Future Gener. Comput. Syst. 143: 420-421 (2023) - [j46]Naweiluo Zhou, Giorgio Scorzelli, Jakob Lüttgau, Rahul R. Kancharla, Joshua J. Kane, Robert Wheeler, Brendan P. Croom, Pania Newell, Valerio Pascucci
, Michela Taufer
:
Orchestration of materials science workflows for heterogeneous resources at large scale. Int. J. High Perform. Comput. Appl. 37(3-4): 260-271 (2023) - [j45]Sanjukta Bhowmick, Patrick Bell, Michela Taufer
:
A Survey of Graph Comparison Methods with Applications to Nondeterminism in High-Performance Computing. Int. J. High Perform. Comput. Appl. 37(3-4): 306-327 (2023) - [j44]Paula Olaya
, Dominic Kennedy
, Ricardo M. Llamas
, Leobardo Valera
, Rodrigo Vargas
, Jay F. Lofstead
, Michela Taufer
:
Building Trust in Earth Science Findings through Data Traceability and Results Explainability. IEEE Trans. Parallel Distributed Syst. 34(2): 704-717 (2023) - [c128]Paula Olaya, Jakob Lüttgau, Camila Roa
, Ricardo M. Llamas, Rodrigo Vargas, Sophia Wen, I-Hsin Chung, Seetharami R. Seelam, Yoonho Park, Jay F. Lofstead, Michela Taufer:
Enabling Scalability in the Cloud for Scientific Workflows: An Earth Science Use Case. CLOUD 2023: 383-393 - [c127]Seoyoung An, Georgia Channing, Catherine D. Schuman, Michela Taufer:
VINARCH: A Visual Analytics Interactive Tool for Neural Network Archaeology. CLUSTER Workshops 2023: 50-51 - [c126]Nigel Tan, Scott V. Luedtke, Michela Taufer, Brian J. Albright:
Efficient Particle Tracing for Scalable Kinetic Plasma Simulation Analysis. CLUSTER Workshops 2023: 54-55 - [c125]Harshita Sahni, Hector Carrillo-Cabada, Ekaterina D. Kots, Silvina Caíno-Lores, Jack Marquez
, Ewa Deelman, Michel A. Cuendet
, Harel Weinstein, Michela Taufer, Trilce Estrada
:
Online Boosted Gaussian Learners for In-Situ Detection and Characterization of Protein Folding States in Molecular Dynamics Simulations. e-Science 2023: 1-10 - [c124]Jakob Lüttgau
, Giorgio Scorzelli, Valerio Pascucci
, Michela Taufer
:
Development of Large-Scale Scientific Cyberinfrastructure and the Growing Opportunity to Democratize Access to Platforms and Data. HCI (26) 2023: 378-389 - [c123]Stephanie Brink
, Michael McKinsey
, David Böhme
, Connor Scully-Allison
, Ian Lumsden
, W. Daryl Hawkins
, Treece Burgess
, Vanessa Lama
, Jakob Lüttgau
, Katherine E. Isaacs
, Michela Taufer
, Olga Pearce
:
Thicket: Seeing the Performance Experiment Forest for the Individual Run Trees. HPDC 2023: 281-293 - [c122]Camila Roa
, Paula Olaya
, Ricardo M. Llamas
, Rodrigo Vargas
, Michela Taufer
:
GEOtiled: A Scalable Workflow for Generating Large Datasets of High-Resolution Terrain Parameters. HPDC 2023: 311-312 - [c121]Jakob Lüttgau
, Heberth F. Martinez
, Glenn Tarcea
, Giorgio Scorzelli
, Valerio Pascucci
, Michela Taufer
:
Studying Latency and Throughput Constraints for Geo-Distributed Data in the National Science Data Fabric. HPDC 2023: 325-326 - [c120]Georgia Channing
, Ria Patel
, Paula Olaya
, Ariel Keller Rorabaugh
, Osamu Miyashita
, Silvina Caíno-Lores
, Catherine D. Schuman
, Florence Tama
, Michela Taufer
:
Composable Workflow for Accelerating Neural Architecture Search Using In Situ Analytics for Protein Classification. ICPP 2023: 1 - [c119]Nigel Tan
, Jakob Lüttgau
, Jack Marquez
, Keita Teranishi
, Nicolas M. Morales
, Sanjukta Bhowmick
, Franck Cappello
, Michela Taufer
, Bogdan Nicolae
:
Scalable Incremental Checkpointing using GPU-Accelerated De-Duplication. ICPP 2023: 665-674 - [c118]Silvina Caíno-Lores
, Michel A. Cuendet
, Jack Marquez
, Ekaterina D. Kots
, Trilce Estrada
, Ewa Deelman
, Harel Weinstein
, Michela Taufer
:
Runtime Steering of Molecular Dynamics Simulations Through In Situ Analysis and Annotation of Collective Variables. PASC 2023: 21:1-21:11 - [c117]Michael Alexander
, Sanjukta Bhowmick
, Befikir Bogale
, Gilberto Díaz
, Anne C. Elster
, Danielle A. Ellsworth
, Carlos Jaime Barrios Hernández
, Evan Jaffe
, Jack Marquez
, Alison Melton
, Aashish Pandey
, Suzanne Parete-Koon
, Nigel Tan
, Michela Taufer
, Verónica G. Melesse Vergara
, Lauren Whitnah
, George K. Thiruvathukal
:
EduHPC Lightning Talk Summary. SC Workshops 2023: 374-378 - [c116]Jakob Lüttgau, Heberth F. Martinez, Paula Olaya
, Giorgio Scorzelli, Glenn Tarcea
, Jay F. Lofstead
, Christine R. Kirkpatrick
, Valerio Pascucci
, Michela Taufer
:
NSDF-Services: Integrating Networking, Storage, and Computing Services into a Testbed for Democratization of Data Delivery. UCC 2023: 11 - [c115]Camila Roa
, Mats Rynge
, Paula Olaya
, Karan Vahi
, Todd Miller, James Griffioen, Shelley Knuth
, John Goodhue
, Dávid Hudák, Alana Romanella
, Ricardo M. Llamas, Rodrigo Vargas, Miron Livny, Ewa Deelman, Michela Taufer:
End-to-end Integration of Scientific Workflows on Distributed Cyberinfrastructures: Challenges and Lessons Learned with an Earth Science Application. UCC 2023: 17 - [i13]Chaitanya Afle, Patrick R. Miles, Silvina Caíno-Lores, Collin D. Capano, Ingo Tews, Karan Vahi, Ewa Deelman, Michela Taufer, Duncan A. Brown:
Reproducing the results for NICER observation of PSR J0030+0451. CoRR abs/2304.01035 (2023) - 2022
- [j43]Ria Patel
, Brandan Roachell
, Silvina Caíno-Lores
, Ross Ketron, Jacob Leonard, Nigel Tan, Karan Vahi
, Duncan A. Brown
, Ewa Deelman
, Michela Taufer
:
Reproducibility of the First Image of a Black Hole in the Galaxy M87 From the Event Horizon Telescope Collaboration. Comput. Sci. Eng. 24(5): 42-52 (2022) - [j42]Stephen Herbein
, Tapasya Patki, Dong H. Ahn, Sebastian Mobo, Clark Hathaway, Silvina Caíno-Lores, James Corbett, David Domyancic, Thomas R. W. Scogland
, Bronis R. de Supinski, Michela Taufer:
An analytical performance model of generalized hierarchical scheduling. Int. J. High Perform. Comput. Appl. 36(3): 289-306 (2022) - [j41]Michael R. Wyatt II, Stephen Herbein
, Todd Gamblin, Michela Taufer
:
AI4IO: A suite of AI-based tools for IO-aware scheduling. Int. J. High Perform. Comput. Appl. 36(3): 370-387 (2022) - [j40]Nigel Tan
, Robert F. Bird, Guangye Chen
, Scott V. Luedtke
, Brian J. Albright, Michela Taufer
:
Analysis of Vector Particle-In-Cell (VPIC) memory usage optimizations on cutting-edge computer architectures. J. Comput. Sci. 60: 101566 (2022) - [j39]Ricardo M. Llamas
, Leobardo Valera, Paula Olaya
, Michela Taufer, Rodrigo Vargas
:
Downscaling Satellite Soil Moisture Using a Modular Spatial Inference Framework. Remote. Sens. 14(13): 3137 (2022) - [j38]Robert F. Bird, Nigel Tan, Scott V. Luedtke
, Stephen Lien Harrell
, Michela Taufer
, Brian J. Albright:
VPIC 2.0: Next Generation Particle-in-Cell Simulations. IEEE Trans. Parallel Distributed Syst. 33(4): 952-963 (2022) - [j37]Ariel Keller Rorabaugh, Silvina Caíno-Lores
, Travis Johnston
, Michela Taufer
:
Building High-Throughput Neural Architecture Search Workflows via a Decoupled Fitness Prediction Engine. IEEE Trans. Parallel Distributed Syst. 33(11): 2913-2926 (2022) - [c114]Paula Olaya, Silvina Caíno-Lores, Vanessa Lama, Ria Patel, Ariel Keller Rorabaugh, Osamu Miyashita, Florence Tama
, Michela Taufer:
Identifying Structural Properties of Proteins from X-ray Free Electron Laser Diffraction Patterns. e-Science 2022: 21-31 - [c113]Ian Lumsden, Jakob Lüttgau, Vanessa Lama, Connor Scully-Allison, Stephanie Brink, Katherine E. Isaacs
, Olga Pearce, Michela Taufer:
Enabling Call Path Querying in Hatchet to Identify Performance Bottlenecks in Scientific Applications. e-Science 2022: 256-266 - [c112]Ria Patel, Ariel Keller Rorabaugh, Paula Olaya, Silvina Caíno-Lores, Georgia Channing
, Catherine D. Schuman, Osamu Miyashita, Florence Tama
, Michela Taufer:
A Methodology to Generate Efficient Neural Networks for Classification of Scientific Datasets. e-Science 2022: 389-390 - [c111]Dominic Kennedy, Paula Olaya, Jay F. Lofstead
, Rodrigo Vargas, Michela Taufer:
Augmenting Singularity to Generate Fine-grained Workflows, Record Trails, and Data Provenance. e-Science 2022: 403-404 - [c110]Glenn Tarcea, Brian Puchala, Tracy Berman
, Giorgio Scorzelli, Valerio Pascucci
, Michela Taufer, John Allison:
The Materials Commons Data Repository. e-Science 2022: 405-406 - [c109]Jae-Seung Yeom, Dong H. Ahn, Ian Lumsden, Jakob Lüttgau, Silvina Caíno-Lores, Michela Taufer:
Ubique: A New Model for Untangling Inter-task Data Dependence in Complex HPC Workflows. e-Science 2022: 421-422 - [c108]Jakob Lüttgau, Silvina Caíno-Lores, Kae Suarez, Dong H. Ahn, Stephen Herbein, Michela Taufer:
Reproducing and Extending Analytical Performance Models of Generalized Hierarchical Scheduling. e-Science 2022: 450-455 - [c107]Paula Olaya
, Jakob Lüttgau
, Naweiluo Zhou, Jay F. Lofstead
, Giorgio Scorzelli, Valerio Pascucci
, Michela Taufer:
NSDF-FUSE: A Testbed for Studying Object Storage via FUSE File Systems. HPDC 2022: 277-278 - [c106]Jakob Lüttgau
, Paula Olaya
, Naweiluo Zhou, Giorgio Scorzelli, Valerio Pascucci
, Michela Taufer:
NSDF-Cloud: Enabling Ad-Hoc Compute Clusters Across Academic and Commercial Clouds. HPDC 2022: 279-280 - [c105]Patrick Bell, Kae Suarez, Barbara Fossum, Dylan Chapp, Sanjukta Bhowmick, Michela Taufer:
A Research-Based Course Module to Study Non-determinism in High Performance Applications. IPDPS Workshops 2022: 346-353 - [c104]Jakob Lüttgau, Giorgio Scorzelli, Valerio Pascucci
, Glenn Tarcea, Christine R. Kirkpatrick, Michela Taufer:
NSDF-Catalog: Lightweight Indexing Service for Democratizing Data Delivery. UCC 2022: 1-10 - [c103]Tu Mai Anh Do, Loïc Pottier, Rafael Ferreira da Silva, Frédéric Suter, Silvina Caíno-Lores, Michela Taufer, Ewa Deelman:
Co-scheduling Ensembles of In Situ Workflows. WORKS@SC 2022: 43-51 - [d1]Duncan A. Brown
, Karan Vahi
, Michela Taufer
, Von Welch
, Ewa Deelman
:
Reproducing GW150914: the first observation of gravitational waves from a binary black hole merger. IEEE DataPort, 2022 - [i12]Connor Scully-Allison, Ian Lumsden, Katy Williams, Jesse Bartels, Michela Taufer, Stephanie Brink, Abhinav Bhatele, Olga Pearce, Katherine E. Isaacs:
Designing an Interactive, Notebook-Embedded, Tree Visualization to Support Exploratory Performance Analysis. CoRR abs/2205.04557 (2022) - [i11]Ria Patel
, Brandan Roachell, Silvina Caíno-Lores, Ross Ketron, Jacob Leonard, Nigel Tan, Duncan A. Brown, Ewa Deelman, Michela Taufer:
Reproducibility of the First Image of a Black Hole in the Galaxy M87 from the Event Horizon Telescope (EHT) Collaboration. CoRR abs/2205.10267 (2022) - [i10]Tu Mai Anh Do, Loïc Pottier, Rafael Ferreira da Silva, Frédéric Suter, Silvina Caíno-Lores, Michela Taufer, Ewa Deelman:
Co-scheduling Ensembles of In Situ Workflows. CoRR abs/2208.09190 (2022) - 2021
- [j36]Duncan A. Brown
, Karan Vahi
, Michela Taufer
, Von Welch
, Ewa Deelman
, Lorena A. Barba, George K. Thiruvathukal:
Reproducing GW150914: The First Observation of Gravitational Waves From a Binary Black Hole Merger. Comput. Sci. Eng. 23(2): 73-82 (2021) - [j35]Tu Mai Anh Do
, Loïc Pottier, Silvina Caíno-Lores, Rafael Ferreira da Silva
, Michel A. Cuendet
, Harel Weinstein
, Trilce Estrada
, Michela Taufer
, Ewa Deelman
:
A lightweight method for evaluating in situ workflow efficiency. J. Comput. Sci. 48: 101259 (2021) - [j34]Patrick Bell
, Kae Suarez, Dylan Chapp, Nigel Tan, Sanjukta Bhowmick, Michela Taufer
:
ANACIN-X: A software framework for studying non-determinism in MPI applications. Softw. Impacts 10: 100151 (2021) - [j33]Hector Carrillo-Cabada
, Jeremy Benson
, Asghar M. Razavi, Brianna Mulligan, Michel A. Cuendet
, Harel Weinstein
, Michela Taufer
, Trilce Estrada
:
A Graphic Encoding Method for Quantitative Classification of Protein Structure and Representation of Conformational Changes. IEEE ACM Trans. Comput. Biol. Bioinform. 18(4): 1336-1349 (2021) - [j32]Dylan Chapp
, Nigel Tan
, Sanjukta Bhowmick
, Michela Taufer
:
Identifying Degree and Sources of Non-Determinism in MPI Applications Via Graph Kernels. IEEE Trans. Parallel Distributed Syst. 32(12): 2936-2952 (2021) - [c102]Michela Taufer
, Ewa Deelman, Rafael Ferreira da Silva
, Trilce Estrada
, Mary W. Hall
, Miron Livny:
A Roadmap to Robust Science for High-throughput Applications: The Developers' Perspective. CLUSTER 2021: 807-808 - [c101]Michela Taufer
, Ewa Deelman, Rafael Ferreira da Silva
, Trilce Estrada
, Mary W. Hall
:
A Roadmap to Robust Science for High-throughput Applications: The Scientists' Perspective. e-Science 2021: 247-248 - [c100]Ross Ketron, Jacob Leonard, Brandan Roachell, Ria Patel
, R. White, Silvina Caíno-Lores, Nigel Tan, Patrick R. Miles, Karan Vahi, Ewa Deelman, Duncan A. Brown, Michela Taufer
:
A Case Study in Scientific Reproducibility from the Event Horizon Telescope (EHT). e-Science 2021: 249-250 - [c99]Michela Taufer:
AI4IO: A Suite of Ai-Based Tools for IO-Aware HPC Resource Management. HiPC 2021: 1 - [c98]Nigel Tan, Robert F. Bird, Guangye Chen, Michela Taufer
:
Optimize Memory Usage in Vector Particle-In-Cell (VPIC) to Break the 10 Trillion Particle Barrier in Plasma Simulations. ICCS (2) 2021: 452-465 - [c97]Tu Mai Anh Do, Loïc Pottier, Rafael Ferreira da Silva
, Silvina Caíno-Lores, Michela Taufer
, Ewa Deelman:
Assessing Resource Provisioning and Allocation of Ensembles of In Situ Workflows. ICPP Workshops 2021: 38:1-38:10 - [i9]Ariel Keller Rorabaugh, Silvina Caíno-Lores, Michael R. Wyatt II, Travis Johnston, Michela Taufer:
PEng4NN: An Accurate Performance Estimation Engine for Efficient Automated Neural Network Architecture Search. CoRR abs/2101.04185 (2021) - [i8]Robert F. Bird, Nigel Tan, Scott V. Luedtke, Stephen Lien Harrell
, Michela Taufer, Brian J. Albright:
VPIC 2.0: Next Generation Particle-in-Cell Simulations. CoRR abs/2102.13133 (2021) - [i7]Mark Asch, François Bodin, Micah Beck, Terry Moore, Michela Taufer, Jean-Pierre Vilotte
:
Cybercosm: New Foundations for a Converged Science Data Ecosystem. CoRR abs/2105.10680 (2021) - 2020
- [j31]Dong H. Ahn, Ned Bass, Albert Chu, Jim Garlick, Mark Grondona, Stephen Herbein, Helgi I. Ingólfsson
, Joseph Koning
, Tapasya Patki
, Thomas R. W. Scogland
, Becky Springmeyer, Michela Taufer
:
Flux: Overcoming scheduling challenges for exascale workflows. Future Gener. Comput. Syst. 110: 202-213 (2020) - [j30]Ricardo M. Llamas
, Mario Guevara
, Danny Rorabaugh
, Michela Taufer
, Rodrigo Vargas
:
Spatial Gap-Filling of ESA CCI Satellite-Derived Soil Moisture Based on Geostatistical Techniques and Multiple Regression. Remote. Sens. 12(4): 665 (2020) - [j29]Dylan Chapp, Victoria Stodden, Michela Taufer
:
Building a Vision for Reproducibility in the Cyberinfrastructure Ecosystem: Leveraging Community Efforts. Supercomput. Front. Innov. 7(1): 112-129 (2020) - [j28]Tao Gao
, Yanfei Guo
, Boyu Zhang, Pietro Cicotti, Yutong Lu, Pavan Balaji, Michela Taufer
:
Memory-Efficient and Skew-Tolerant MapReduce Over MPI for Supercomputing Systems. IEEE Trans. Parallel Distributed Syst. 31(12): 2734-2748 (2020) - [c96]Tu Mai Anh Do, Loïc Pottier, Stephen Thomas, Rafael Ferreira da Silva
, Michel A. Cuendet
, Harel Weinstein, Trilce Estrada
, Michela Taufer
, Ewa Deelman:
A Novel Metric to Evaluate In Situ Workflows. ICCS (1) 2020: 538-553 - [c95]Michael R. Wyatt II, Stephen Herbein, Kathleen Shoga, Todd Gamblin, Michela Taufer
:
CanarIO: Sounding the Alarm on IO-Related Performance Degradation. IPDPS 2020: 73-83 - [c94]Stephanie Brink, Ian Lumsden, Connor Scully-Allison, Katy Williams, Olga Pearce, Todd Gamblin, Michela Taufer
, Katherine E. Isaacs
, Abhinav Bhatele:
Usability and Performance Improvements in Hatchet. HUST/ProTools@SC 2020: 49-58 - [i6]Paula Olaya, Jay F. Lofstead, Michela Taufer:
Building Containerized Environments for Reproducibility and Traceability of Scientific Workflows. CoRR abs/2009.08495 (2020) - [i5]Duncan A. Brown
, Karan Vahi, Michela Taufer, Von Welch, Ewa Deelman:
Reproducing GW150914: the first observation of gravitational waves from a binary black hole merger. CoRR abs/2010.07244 (2020)
2010 – 2019
- 2019
- [j27]Dylan Chapp
, Danny Rorabaugh
, Kento Sato, Dong H. Ahn, Michela Taufer
:
A three-phase workflow for general and expressive representations of nondeterminism in HPC applications. Int. J. High Perform. Comput. Appl. 33(6) (2019) - [j26]Robert Searles, Stephen Herbein, Travis Johnston, Michela Taufer
, Sunita Chandrasekaran:
Creating a portable, high-level graph analytics paradigm for compute and data-intensive applications. Int. J. High Perform. Comput. Netw. 13(1): 105-118 (2019) - [c93]Danny Rorabaugh, Mario Guevara
, Ricardo M. Llamas, Joy Kitson, Rodrigo Vargas
, Michela Taufer
:
SOMOSPIE: A Modular SOil MOisture SPatial Inference Engine Based on Data-Driven Decisions. eScience 2019: 1-10 - [c92]Michela Taufer
, Ewa Deelman, Stephen Thomas
, Michael R. Wyatt II, Tu Mai Anh Do, Loïc Pottier, Rafael Ferreira da Silva
, Harel Weinstein, Michel A. Cuendet
, Trilce Estrada
:
Characterizing In Situ and In Transit Analytics of Molecular Dynamics Simulations for Next-Generation Supercomputers. eScience 2019: 188-198 - [c91]Dylan Chapp, Danny Rorabaugh, Duncan A. Brown
, Ewa Deelman, Karan Vahi, Von Welch
, Michela Taufer
:
Applicability Study of the PRIMAD Model to LIGO Gravitational Wave Search Workflows. P-RECS@HPDC 2019: 1-6 - [c90]Ewa Deelman, Victoria Stodden, Michela Taufer
, Von Welch
:
Initial Thoughts on Cybersecurity And Reproducibility. P-RECS@HPDC 2019: 13-15 - [c89]Michela Taufer:
Session details: Reliability and Variability. HPDC 2019 - [c88]Joshua Hoke Davis
, Tao Gao, Sunita Chandrasekaran, Heike Jagode, Anthony Danalis, Jack J. Dongarra, Pavan Balaji, Michela Taufer
:
Characterization of Power Usage and Performance in Data-Intensive Applications Using MapReduce over MPI. PARCO 2019: 287-298 - [e4]Michela Taufer, Pavan Balaji, Antonio J. Peña:
Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis, SC 2019, Denver, Colorado, USA, November 17-19, 2019. ACM 2019, ISBN 978-1-4503-6229-0 [contents] - [i4]Joshua Hoke Davis, Tao Gao, Sunita Chandrasekaran, Michela Taufer:
Studying the Impact of Power Capping on MapReduce-based, Data-intensive Mini-applications on Intel KNL and KNM Architectures. CoRR abs/1903.11694 (2019) - [i3]Dylan Chapp, Danny Rorabaugh, Duncan A. Brown
, Ewa Deelman, Karan Vahi, Von Welch, Michela Taufer:
Applicability study of the PRIMAD model to LIGO gravitational wave search workflows. CoRR abs/1904.05211 (2019) - [i2]Danny Rorabaugh, Mario Guevara, Ricardo M. Llamas
, Joy Kitson, Rodrigo Vargas, Michela Taufer:
SOMOSPIE: A modular SOil MOisture SPatial Inference Engine based on data driven decision. CoRR abs/1904.07754 (2019) - 2018
- [j25]Ewa Deelman, Tom Peterka, Ilkay Altintas, Christopher D. Carothers, Kerstin Kleese van Dam
, Kenneth Moreland, Manish Parashar, Lavanya Ramakrishnan, Michela Taufer
, Jeffrey S. Vetter:
The future of scientific workflows. Int. J. High Perform. Comput. Appl. 32(1): 159-175 (2018) - [j24]Dylan Chapp, Kento Sato, Dong H. Ahn, Michela Taufer
:
Record-and-Replay Techniques for HPC Systems: A Survey. Supercomput. Front. Innov. 5(1): 11-30 (2018) - [c87]Trilce Estrada
, Jeremy Benson, Hector Carrillo-Cabada, Asghar M. Razavi, Michel A. Cuendet
, Harel Weinstein
, Ewa Deelman, Michela Taufer
:
Graphic Encoding of Macromolecules for Efficient High-Throughput Analysis. BCB 2018: 315-324 - [c86]Sean McDaniel-Gray, David L. Boothe, Alfred B. Yu, Dale R. Shires, Michela Taufer
:
Leveraging In Situ Data Analysis to Enable Computational Steering of Brain's Neocortex Simulations with GENESIS. HPCC/SmartCity/DSS 2018: 873-880 - [c85]Tao Gao, Yanfei Guo, Boyu Zhang, Pietro Cicotti, Yutong Lu, Pavan Balaji, Michela Taufer
:
On the Power of Combiner Optimizations in MapReduce Over MPI Workflows. ICPADS 2018: 441-448 - [c84]Xinyu Chen, Jeremy Benson, Matt Peterson, Michela Taufer
, Trilce Estrada
:
KeyBin2: Distributed Clustering for Scalable and In-Situ Analysis. ICPP 2018: 34:1-34:10 - [c83]Michael R. Wyatt II, Stephen Herbein, Todd Gamblin, Adam Moody, Dong H. Ahn, Michela Taufer
:
PRIONN: Predicting Runtime and IO using Neural Networks. ICPP 2018: 46:1-46:12 - [c82]Michela Taufer
:
Modeling the Next-Generation High Performance Schedulers. SIGSIM-PADS 2018: 1 - 2017
- [j23]Michela Taufer
, Arnold L. Rosenberg:
Scheduling DAG-based workflows on single cloud instances: High-performance and cost effectiveness with a static scheduler. Int. J. High Perform. Comput. Appl. 31(1): 19-31 (2017) - [j22]Travis Johnston, Boyu Zhang, Adam Liwo
, Silvia Crivelli, Michela Taufer
:
In situ data analytics and indexing of protein trajectories. J. Comput. Chem. 38(16): 1419-1430 (2017) - [j21]Boyu Zhang, Trilce Estrada
, Pietro Cicotti, Pavan Balaji, Michela Taufer
:
Enabling scalable and accurate clustering of distributed ligand geometries on supercomputers. Parallel Comput. 63: 38-60 (2017) - [c81]Thomas Kitson, Paula Olaya, Elizabeth Racca, Michael R. Wyatt II, Mario Guevara
, Rodrigo Vargas
, Michela Taufer
:
Data analytics for modeling soil moisture patterns across united states ecoclimatic domains. IEEE BigData 2017: 4768-4770 - [c80]Tao Gao, Yanfei Guo, Yanjie Wei, Bingqiang Wang, Yutong Lu, Pietro Cicotti, Pavan Balaji, Michela Taufer
:
Bloomfish: A Highly Scalable Distributed K-mer Counting Framework. ICPADS 2017: 170-179 - [c79]Tao Gao, Yanfei Guo, Boyu Zhang, Pietro Cicotti, Yutong Lu, Pavan Balaji, Michela Taufer
:
Mimir: Memory-Efficient and Scalable MapReduce for Large Supercomputing Systems. IPDPS 2017: 1098-1108 - [e3]Julian M. Kunkel, Rio Yokota, Michela Taufer
, John Shalf:
High Performance Computing - ISC High Performance 2017 International Workshops, DRBSD, ExaComm, HCPM, HPC-IODC, IWOPH, IXPUG, P^3MA, VHPC, Visualization at Scale, WOPSSS, Frankfurt, Germany, June 18-22, 2017, Revised Selected Papers. Lecture Notes in Computer Science 10524, Springer 2017, ISBN 978-3-319-67629-6 [contents] - 2016
- [j20]Stephen Herbein
, Sean McDaniel, Norbert Podhorszki
, Jeremy Logan, Scott Klasky, Michela Taufer
:
Performance characterization of irregular I/O at the extreme scale. Parallel Comput. 51: 17-36 (2016) - [j19]Michela Taufer
, Pavan Balaji, Satoshi Matsuoka:
Special Issue on Cluster Computing. Parallel Comput. 58: 25-26 (2016) - [c78]Michael R. Wyatt II, Travis Johnston
, Mia Papas
, Michela Taufer
:
Development of a Scalable Method for Creating Food Groups Using the NHANES Dataset and MapReduce. BCB 2016: 118-127 - [c77]Ryan McKenna, Stephen Herbein, Adam Moody, Todd Gamblin, Michela Taufer
:
Machine Learning Predictions of Runtime and IO Traffic on High-End Clusters. CLUSTER 2016: 255-258 - [c76]Michela Taufer
:
Who is Afraid of I/O?: Exploring I/O Challenges and Opportunities at the Exascale. ScienceCloud@HPDC 2016: 1 - [c75]Stephen Herbein, Dong H. Ahn, Don Lipari, Thomas R. W. Scogland, Marc Stearman, Mark Grondona, Jim Garlick, Becky Springmeyer, Michela Taufer
:
Scalable I/O-Aware Job Scheduling for Burst Buffer Enabled HPC Clusters. HPDC 2016: 69-80 - [c74]Sean McDaniel, David L. Boothe, Joshua C. Crone, Song Jun Park, Dale R. Shires, Alfred B. Yu, Michela Taufer
:
Study of Neocortex Simulations with GENESIS on High Performance Computing Resources. ICPADS 2016: 924-931 - [c73]Travis Johnston, Connor Zanin, Michela Taufer
:
HYPPO: A Hybrid, Piecewise Polynomial Modeling Technique for Non-Smooth Surfaces. SBAC-PAD 2016: 26-33 - [c72]Jeremy Benson, Trilce Estrada
, Arnold L. Rosenberg, Michela Taufer
:
Scheduling Matters: Area-Oriented Heuristic for Resource Management. SBAC-PAD 2016: 214-221 - [c71]Stephen Herbein, Ayush Dusia
, Aaron Myles Landwehr, Sean McDaniel, José Monsalve Diaz, Yang Yang, Seetharami R. Seelam, Michela Taufer
:
Resource Management for Running HPC Applications in Container Clouds. ISC 2016: 261-278 - [e2]Michela Taufer
, Bernd Mohr
, Julian M. Kunkel:
High Performance Computing - ISC High Performance 2016 International Workshops, ExaComm, E-MuCoCoS, HPC-IODC, IXPUG, IWOPH, P^3MA, VHPC, WOPSSS, Frankfurt, Germany, June 19-23, 2016, Revised Selected Papers. Lecture Notes in Computer Science 9945, 2016, ISBN 978-3-319-46078-9 [contents] - 2015
- [j18]Shuching Ou, Di Cui
, Matthew Wezowicz, Michela Taufer
, Sandeep Patel:
Free energetics of carbon nanotube association in aqueous inorganic NaI salt solutions: Temperature effects using all-atom molecular dynamics simulations. J. Comput. Chem. 36(16): 1196-1212 (2015) - [c70]Boyu Zhang, Trilce Estrada
, Pietro Cicotti, Pavan Balaji, Michela Taufer
:
Accurate Scoring of Drug Conformations at the Extreme Scale. CCGRID 2015: 817-822 - [c69]Dylan Chapp, Travis Johnston
, Michela Taufer
:
On the Need for Reproducible Numerical Accuracy through Intelligent Runtime Selection of Reduction Algorithms at the Extreme Scale. CLUSTER 2015: 166-175 - [c68]Sean McDaniel, Stephen Herbein
, Michela Taufer
:
A Two-Tiered Approach to I/O Quality of Service in Docker Containers. CLUSTER 2015: 490-491 - [c67]Ayush Dusia
, Yang Yang, Michela Taufer
:
Network Quality of Service in Docker Containers. CLUSTER 2015: 527-528 - [c66]José Monsalve Diaz, Aaron Myles Landwehr, Michela Taufer
:
Dynamic CPU Resource Allocation in Containerized Cloud Environments. CLUSTER 2015: 535-536 - [c65]Ryan McKinney, Vivek K. Pallipuram, Rodrigo Vargas
, Michela Taufer
:
From HPC Performance to Climate Modeling: Transforming Methods for HPC Predictions into Models of Extreme Climate Conditions. e-Science 2015: 108-117 - [c64]Travis Johnston
, Mohammad Alsulmi
, Pietro Cicotti, Michela Taufer
:
Performance Tuning of MapReduce Jobs Using Surrogate-based Modeling. ICCS 2015: 49-59 - [c63]Trilce Estrada
, Michael R. Wyatt II, Michela Taufer
:
A Genetic Programming Approach to Design Resource Allocation Policies for Heterogeneous Workflows in the Cloud. ICPADS 2015: 372-379 - [c62]Vivek K. Pallipuram, Trilce Estrada
, Michela Taufer
:
A Testing Engine for High-Performance and Cost-Effective Workflow Execution in the Cloud. ICPP 2015: 849-858 - [c61]Ramesh Hariharan, Ananth Kalyanaraman, Michela Taufer
, Trilce Estrada, Pietro Cicotti, Pavan Balaji:
HiCOMB 2015 Keynote and Invited Talks. IPDPS Workshops 2015: 331 - [c60]Michela Taufer
:
AsHES Keynote. IPDPS Workshops 2015: 593 - [e1]Thilo Kielmann, Dean Hildebrand, Michela Taufer:
Proceedings of the 24th International Symposium on High-Performance Parallel and Distributed Computing, HPDC 2015, Portland, OR, USA, June 15-19, 2015. ACM 2015, ISBN 978-1-4503-3550-8 [contents] - [i1]Travis Johnston, Boyu Zhang, Adam Liwo, Silvia Crivelli, Michela Taufer:
It-Situ Data Analysis of Protein Folding Trajectories. CoRR abs/1510.08789 (2015) - 2014
- [j17]Samuel Schlachter, Stephen Herbein
, Shuching Ou, Jeremy S. Logan, Sandeep Patel, Michela Taufer
:
Pursuing Coordinated Trajectory Progression and Efficient Resource Utilization of GPU-Enabled Molecular Dynamics Simulations. IEEE Des. Test 31(1): 40-50 (2014) - [c59]Vivek K. Pallipuram, Jeffrey DiMarco, Michela Taufer
:
Applying frequency analysis techniques to dag-based workflows to benchmark and predict resource behavior on non-dedicated clusters. CLUSTER 2014: 29-37 - [c58]Feng Raoking, Joanne McGrath Cohoon, Kathryn Cooke, Michela Taufer
, Trilce Estrada
:
Gender and volunteer computing: A survey study. FIE 2014: 1-5 - [c57]Marcos Portnoi, Samuel Schlachter, Michela Taufer
:
Study of the Network Impact on Earthquake Early Warning in the Quake-catcher Network Project. ICCS 2014: 453-464 - [c56]Michael Matheny, Stephen Herbein
, Norbert Podhorszki, Scott Klasky, Michela Taufer
:
Using surrogate-based modeling to predict optimal I/O parameters of applications at the extreme scale. ICPADS 2014: 568-575 - [c55]Stephen Herbein
, Scott Klasky, Michela Taufer
:
Benchmarking the Performance of Scientific Applications with Irregular I/O at the Extreme Scale. ICPP Workshops 2014: 292-301 - [c54]Boyu Zhang, Trilce Estrada
, Pietro Cicotti, Michela Taufer
:
Enabling In-Situ Data Analysis for Large Protein-Folding Trajectory Datasets. IPDPS 2014: 221-230 - [c53]Bahman Javadi, Boyu Zhang, Michela Taufer
:
Bandwidth Modeling in Large Distributed Systems for Big Data Applications. PDCAT 2014: 21-27 - 2013
- [j16]Michela Taufer
, Narayan Ganesan, Sandeep Patel:
GPU-Enabled Macromolecular Simulation: Challenges and Opportunities. Comput. Sci. Eng. 15(1): 56-65 (2013) - [j15]Kyle E. Benson, Samuel Schlachter, Trilce Estrada
, Michela Taufer
, Jesse Lawrence, Elizabeth Cochran
:
On the powerful use of simulations in the Quake-Catcher Network to efficiently position low-cost earthquake sensors. Future Gener. Comput. Syst. 29(8): 2128-2142 (2013) - [c52]Stephen Herbein
, Michael Matheny, Matthew Wezowicz, Jaron T. Krogel
, Jeremy Logan, J. Kim, Scott Klasky, Michela Taufer
:
Performance Impact of I/O on QMCPack Simulations at the Petascale and Beyond. CSE 2013: 92-99 - [c51]Boyu Zhang, Trilce Estrada
, Pietro Cicotti, Michela Taufer
:
On Efficiently Capturing Scientific Properties in Distributed Big Data without Moving the Data: A Case Study in Distributed Structural Biology Using MapReduce. CSE 2013: 117-124 - [c50]Samuel Schlachter, Stephen Herbein
, Michela Taufer
, Shuching Ou, Sandeep Patel, Jeremy S. Logan:
Efficient SDS Simulations on Multi-GPU Nodes of XSEDE High-End Clusters. e-Science 2013: 116-123 - [c49]Trilce Estrada
, Kathleen L. Pusecker, Manuel R. Torres, Joanne McGrath Cohoon, Michela Taufer
:
Benchmarking Gender Differences in Volunteer Computing Projects. e-Science 2013: 342-349 - [c48]Daniel T. Yehdego, Boyu Zhang, Vikram Kumar Reddy Kodimala, Kyle L. Johnson, Michela Taufer
, Ming-Ying Leung:
Secondary Structure Predictions for Long RNA Sequences Based on Inversion Excursions and MapReduce. IPDPS Workshops 2013: 520-529 - [c47]Matthew Wezowicz, Trilce Estrada
, Sandeep Patel, Michela Taufer
:
Performance Dissection of a Molecular Dynamics Code across CUDA and GPU Generations. IPDPS Workshops 2013: 1355-1364 - 2012
- [j14]Trilce Estrada
, Boyu Zhang, Pietro Cicotti, Roger S. Armen, Michela Taufer
:
A scalable and accurate method for classifying protein-ligand binding geometries using a MapReduce approach. Comput. Biol. Medicine 42(7): 758-771 (2012) - [j13]Giorgos Arampatzis, Markos A. Katsoulakis
, Petr Plechác, Michela Taufer
, Lifan Xu:
Hierarchical fractional-step approximations and parallel kinetic Monte Carlo algorithms. J. Comput. Phys. 231(23): 7795-7814 (2012) - [c46]Daniel T. Yehdego, Boyu Zhang, Michela Taufer
, Vikram Kumar Reddy Kodimala, Rahulsimham Vegesna, Sameera Viswakula, Kyle L. Johnson, Ming-Ying Leung:
Secondary structure predictions for long RNA sequences based on inversion excursions: preliminary results. BCB 2012: 545-547 - [c45]Boyu Zhang, Daniel T. Yehdego, Kyle L. Johnson, Ming-Ying Leung
, Michela Taufer
:
A modularized MapReduce framework to support RNA secondary structure prediction and analysis workflows. BIBM Workshops 2012: 86-93 - [c44]Michael Matheny, Samuel Schlachter, L. M. Crouse, E. T. Kimmel, Trilce Estrada
, Marcel Schumann, Roger S. Armen, Gary M. Zoppetti, Michela Taufer
:
ExSciTecH: Expanding volunteer computing to Explore Science, Technology, and Health. eScience 2012: 1-8 - [c43]Trilce Estrada
, Boyu Zhang, Michela Taufer
, Pietro Cicotti, Roger S. Armen:
Reengineering High-throughput Molecular Datasets for Scalable Clustering Using MapReduce. HPCC-ICESS 2012: 351-359 - [c42]Trilce Estrada
, Michela Taufer
:
On the effectiveness of application-aware self-management for scientific discovery in volunteer computing systems. SC 2012: 80 - [c41]Matthew Wezowicz, Michela Taufer
:
On the Cost of a General GPU Framework: The Strange Case of CUDA 4.0 vs. CUDA 5.0. SC Companion 2012: 1535-1536 - 2011
- [j12]Jong Hyuk Park, Sheikh Iqbal Ahamed, Willy Susilo
, Michela Taufer
:
Special issue of computer communications on information and future communication security. Comput. Commun. 34(3): 223-225 (2011) - [j11]Brad A. Bauer, Joseph E. Davis, Michela Taufer
, Sandeep Patel
:
Molecular dynamics simulations of aqueous ions at the liquid-vapor interface accelerated using graphics processors. J. Comput. Chem. 32(3): 375-385 (2011) - [j10]Narayan Ganesan, Brad A. Bauer, Timothy R. Lucas, Sandeep Patel
, Michela Taufer
:
Structural, dynamic, and electrostatic properties of fully hydrated DMPC bilayers from molecular dynamics simulations accelerated with graphical processing units (GPUs). J. Comput. Chem. 32(14): 2958-2973 (2011) - [j9]Obaidur Rahaman, Trilce Estrada
, Douglas J. Doren, Michela Taufer
, Charles L. Brooks III, Roger S. Armen:
Evaluation of Several Two-Step Scoring Functions Based on Linear Interaction Energy, Effective Ligand Size, and Empirical Pair Potentials for Prediction of Protein-Ligand Binding Geometry and Free Energy. J. Chem. Inf. Model. 51(9): 2047-2065 (2011) - [c40]Kyle E. Benson, Trilce Estrada
, Michela Taufer
, Jesse Lawrence, Elizabeth Cochran
:
On the Powerful Use of Simulations in the Quake-Catcher Network to Efficiently Position Low-cost Earthquake Sensors. eScience 2011: 77-84 - [c39]Rolf Riesen, Kurt B. Ferreira, Maria Ruiz Varela, Michela Taufer, Arun Rodrigues:
Simulating Application Resilience at Exascale. Euro-Par Workshops (2) 2011: 221-230 - [c38]Trilce Estrada
, Michela Taufer
:
Providing Quality of Science in Volunteer Computing. HPCC 2011: 68-77 - [c37]Narayan Ganesan, Michela Taufer
, Brad A. Bauer, Sandeep Patel:
FENZI: GPU-Enabled Molecular Dynamics Simulations of Large Membrane Regions Based on the CHARMM Force Field and PME. IPDPS Workshops 2011: 472-480 - [c36]Trilce Estrada
, Boyu Zhang, Pietro Cicotti, Roger S. Armen, Michela Taufer
:
Poster: study of protein-ligand binding geometries using a scalable and accurate octree-based algorithm in mapReduce. SC Companion 2011: 39-40 - [r1]Roger S. Armen, Eric R. May, Michela Taufer:
Protein Docking. Encyclopedia of Parallel Computing 2011: 1638-1647 - 2010
- [c35]Trilce Estrada
, Roger S. Armen, Michela Taufer
:
Automatic selection of near-native protein-ligand conformations using a hierarchical clustering and volunteer computing. BCB 2010: 204-213 - [c34]Narayan Ganesan, Roger D. Chamberlain, Jeremy Buhler, Michela Taufer
:
Accelerating HMMER on GPUs by implementing hybrid data and task parallelism. BCB 2010: 418-421 - [c33]Abel Licon, Michela Taufer, Ming-Ying Leung, Kyle L. Johnson:
A Dynamic Programming Algorithm for Finding the Optimal Segmentation of an RNA Sequence in Secondary Structure Predictions. BICoB 2010: 165-170 - [c32]Michela Taufer
, Omar Padron, Philip Saponaro, Sandeep Patel:
Improving numerical reproducibility and stability in large-scale numerical simulations on GPUs. IPDPS 2010: 1-9 - [c31]Lifan Xu, Michela Taufer
, Stuart Collins, Dionisios G. Vlachos
:
Parallelization of tau-leap coarse-grained Monte Carlo simulations on GPUs. IPDPS 2010: 1-9
2000 – 2009
- 2009
- [j8]Trilce Estrada
, Michela Taufer
, David P. Anderson:
Performance Prediction and Analysis of BOINC Projects: An Empirical Study with EmBOINC. J. Grid Comput. 7(4): 537-554 (2009) - [j7]Michela Taufer
, Abel Licon, Roberto Araiza, David Mireles, F. H. D. van Batenburg, Alexander P. Gultyaev, Ming-Ying Leung:
PseudoBase++: an extension of PseudoBase for easy searching, formatting and visualization of pseudoknots. Nucleic Acids Res. 37(Database-Issue): 127-135 (2009) - [c30]Joseph E. Davis, Adnan Ozsoy, Sandeep Patel, Michela Taufer
:
Towards Large-Scale Molecular Dynamics Simulations on Graphics Processors. BICoB 2009: 176-186 - [c29]Trilce Estrada
, Michela Taufer
, Kevin Reed:
Modeling Job Lifespan Delays in Volunteer Computing Projects. CCGRID 2009: 331-338 - [c28]James Atlas
, Trilce Estrada
, Keith Decker, Michela Taufer
:
Balancing Scientist Needs and Volunteer Preferences in Volunteer Computing Using Constraint Optimization. ICCS (1) 2009: 143-152 - [c27]Patrick McClory, Ezra Kissel, D. Martin Swany
, Michela Taufer
:
MNEMONIC: A Network Environment for Automatic Optimization and Tuning of Data Movement over Advanced Networks. ICCCN 2009: 1-7 - [c26]Trilce Estrada
, Michela Taufer
, Kevin Reed, David P. Anderson:
EmBOINC: An emulator for performance analysis of BOINC projects. IPDPS 2009: 1-8 - 2008
- [j6]Michela Taufer, Ming-Ying Leung, Thamar Solorio, Abel Licon, David Mireles, Roberto Araiza, Kyle L. Johnson:
RNAVLab: A virtual laboratory for studying RNA secondary structures based on grid computing technology. Parallel Comput. 34(11): 661-680 (2008) - [j5]Trilce Estrada, Olac Fuentes, Michela Taufer:
A distributed evolutionary method to design scheduling policies for volunteer computing. SIGMETRICS Perform. Evaluation Rev. 36(3): 40-49 (2008) - [c25]Trilce Estrada
, Olac Fuentes, Michela Taufer
:
A distributed evolutionary method to design scheduling policies for volunteer computing. Conf. Computing Frontiers 2008: 313-322 - [c24]Michela Taufer
, Thamar Solorio, Abel Licon, David Mireles, Ming-Ying Leung
:
On the Effectiveness of Rebuilding RNA Secondary Structures from Sequence Chunks. IPDPS 2008: 1-8 - 2007
- [c23]Michela Taufer
, Andre Kerstens, Trilce Estrada
, David A. Flores, Richard Zamudio, Patricia J. Teller, Roger S. Armen, Charles L. Brooks III:
Moving Volunteer Computing towards Knowledge-Constructed, Dynamically-Adaptive Modeling and Scheduling. IPDPS 2007: 1-8 - [c22]Michela Taufer
, Ming-Ying Leung, Kyle L. Johnson, Abel Licon:
RNAVLab: A unified environment for computational RNA structure analysis based on grid computing technology. IPDPS 2007: 1-8 - [c21]Richard Zamudio, Daniel Catarino, Michela Taufer
, Brent Stearn, Karan Bhatia:
Topaz: Extending Firefox to Accommodate the GridFTP Protocol. IPDPS 2007: 1-8 - [c20]Michela Taufer
, Andre Kerstens, Trilce Estrada
, David A. Flores, Patricia J. Teller:
SimBA: A Discrete Event Simulator for Performance Prediction of Volunteer Computing Projects. PADS 2007: 189-197 - [c19]Guillermo A. Lopez, Michela Taufer
, Patricia J. Teller:
Evaluation of IEEE 754 floating-point arithmetic compliance across a wide range of heterogeneous computers. Richard Tapia Celebration of Diversity in Computing Conference 2007: 1-4 - 2006
- [j4]Michela Taufer
, Chahm An, Andreas Kerstens, Charles L. Brooks III:
Predictor@Home: A "Protein Structure Prediction Supercomputer' Based on Global Computing. IEEE Trans. Parallel Distributed Syst. 17(8): 786-796 (2006) - [c18]Trilce Estrada
, David A. Flores, Michela Taufer
, Patricia J. Teller, Andre Kerstens, David P. Anderson:
The Effectiveness of Threshold-Based Scheduling Policies in BOINC Projects. e-Science 2006: 88 - [c17]Maria Gabriela Aguilera, Patricia J. Teller, Michela Taufer
, Felix Wolf:
A systematic multi-step methodology for performance analysis of communication traces of distributed applications based on hierarchical clustering. IPDPS 2006 - [c16]Trilce Estrada
, Abel Licon, Michela Taufer
:
compPknots: A Framework for Parallel Prediction and Comparison of RNA Secondary Structures with Pseudoknots. ISPA Workshops 2006: 677-686 - [c15]David A. Flores, Trilce Estrada
, Michela Taufer
, Patricia J. Teller, Andre Kerstens:
Poster reception - SimBA: a discrete event simulator for performance prediction of volunteer computing projects. SC 2006: 168 - 2005
- [j3]Michela Taufer
, Michael F. Crowley
, Daniel J. Price, Andrew A. Chien, Charles L. Brooks III:
Study of a highly accurate and fast protein-ligand docking method based on molecular dynamics. Concurr. Comput. Pract. Exp. 17(14): 1627-1641 (2005) - [j2]Kim K. Baldridge, Jerry P. Greenberg, Wibke Sudholt, Stephen Mock, Ilkay Altintas, Céline Amoreira, Yohann Potier, Adam Birnbaum, Karan Bhatia, Michela Taufer
:
The Computational Chemistry Prototyping Environment. Proc. IEEE 93(3): 510-521 (2005) - [j1]Pietro Cicotti, Michela Taufer
, Andrew A. Chien:
DGMonitor: A Performance Monitoring Tool for Sandbox-Based Desktop Grid Platforms. J. Supercomput. 34(2): 113-133 (2005) - [c14]Michela Taufer
, Patricia J. Teller, David P. Anderson, Charles L. Brooks III:
Metrics for Effective Resource Management in Global Computing Environments. e-Science 2005: 204-211 - [c13]Michela Taufer
, David P. Anderson, Pietro Cicotti, Charles L. Brooks III:
Homogeneous Redundancy: a Technique to Ensure Integrity of Molecular Simulation Results Using Public Computing. IPDPS 2005 - [c12]Michela Taufer
, Chahm An, Andreas Kerstens, Charles L. Brooks III:
Predictor@Home: A "Protein Structure Prediction Supercomputer" Based on Public-Resource Computing. IPDPS 2005 - 2004
- [c11]Pietro Cicotti, Michela Taufer
, Andrew A. Chien:
DGMonitor: A Performance Monitoring Tool for Sandbox-Based Desktop Grid Platforms. IPDPS 2004 - [c10]Derrick Kondo, Michela Taufer
, Charles L. Brooks III, Henri Casanova, Andrew A. Chien:
Characterizing and Evaluating Desktop Grids: An Empirical Study. IPDPS 2004 - [c9]Michela Taufer
, Michael F. Crowley, Daniel J. Price, Andrew A. Chien, Charles L. Brooks III:
Study of a Highly Accurate and Fast Protein-Ligand Docking Algorithm Based on Molecular Dynamics. IPDPS 2004 - 2003
- [c8]Bennet Uk, Michela Taufer
, Thomas Stricker, Giovanni Settanni
, Andrea Cavalli, Amedeo Caflisch:
Combining Task- and Data Parallelism to Speed up Protein Folding on a Desktop Grid Platform. CCGRID 2003: 240-247 - [c7]Michela Taufer
, Thomas Stricker:
A Performance Monitor Based on Virtual Global Time for Clusters of PCs. CLUSTER 2003: 64-72 - [c6]Bennet Uk, Michela Taufer
, Thomas Stricker, Giovanni Settanni
, Andrea Cavalli:
Implementation and Characterization of Protein Folding on a Desktop Computational Grid - Is CHARMM a Suitable Candidate for the United Devices MetaProcessor? IPDPS 2003: 50 - 2002
- [b1]Michela Taufer:
Inverting middleware: performance analysis of layered application codes in high performance distributed computing. ETH Zurich, 2002, ISBN 3-89649-821-5, pp. 1-137 - [c5]Michela Taufer
, Thomas Stricker, Gerard Roos, Peter Güntert:
On the Migration of the Scientific Code Dyana from SMPs to Clusters of PCs and on to the Grid. CCGRID 2002: 93-101 - [c4]Michela Taufer
, Egon Perathoner, Andrea Cavalli, Amedeo Caflisch, Thomas Stricker:
Performance Characterization of a Molecular Dynamics Code on PC Clusters: Is There Any Easy Parallelism in CHARMM?. IPDPS 2002 - [c3]Michela Taufer
, Thomas Stricker, Roger Weber:
Scalability and resource usage of an OLAP benchmark on clusters of PCs. SPAA 2002: 83-94
1990 – 1999
- 1998
- [c2]Michela Taufer
, Thomas Stricker:
Accurate Performance Evaluation, Modelling and Prediction of a Message Passing Simulation Code based on Middleware. SC 1998: 52 - 1996
- [c1]Peter Arbenz, Martin Billeter, Peter Güntert, Peter Luginbühl, Michela Taufer
, Urs von Matt:
Molecular Dynamics Simulations on Cray Clusters using the SCIDDLE-PVM environment. PVM 1996: 142-149
Coauthor Index
![](https://dblp.dagstuhl.de/img/cog.dark.24x24.png)
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