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2020 – today
- 2020
[i3]Rutger A. Vos
, Toshiaki Katayama, Hiroyuki Mishima, Shin Kawano, Shuichi Kawashima, Jin-Dong Kim, Yuki Moriya, Toshiaki Tokimatsu, Atsuko Yamaguchi, Yasunori Yamamoto, Hongyan Wu, Peter Amstutz, Erick Antezana, Nobuyuki P. Aoki, Kazuharu Arakawa, Jerven T. Bolleman, Evan E. Bolton, Raoul Jean Pierre Bonnal, Hidemasa Bono, Kees Burger, Hirokazu Chiba, Kevin Bretonnel Cohen, Eric W. Deutsch, Jesualdo Tomás Fernández-Breis, Gang Fu, Takatomo Fujisawa, Atsushi Fukushima, Alexander García Castro, Naohisa Goto, Tudor Groza, Colin Hercus, Robert Hoehndorf, Kotone Itaya, Nick S. Juty, Takeshi Kawashima, Jee-Hyub Kim, Akira R. Kinjo, Masaaki Kotera, Kouji Kozaki, Sadahiro Kumagai, Tatsuya Kushida, Thomas Lütteke, Masaaki Matsubara, Joe Miyamoto, Attayeb Mohsen, Hiroshi Mori, Yuki Naito, Takeru Nakazato, Jeremy NguyenXuan, Kozo Nishida, Naoki Nishida, Hiroyo Nishide, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Benedict Paten, Jean-Luc Perret, Philip Prathipati, Pjotr Prins, Núria Queralt-Rosinach, Daisuke Shinmachi, Shinya Suzuki, Tsuyosi Tabata, Terue Takatsuki, Kieron R. Taylor, Mark Thompson, Ikuo Uchiyama, Bruno Vieira, Chih-Hsuan Wei, Mark D. Wilkinson, Issaku Yamada, Ryota Yamanaka, Kazutoshi Yoshitake, Akiyasu C. Yoshizawa, Michel Dumontier, Kenjiro Kosaki, Toshihisa Takagi:
BioHackathon 2015: Semantics of data for life sciences and reproducible research. F1000Research 9: 136 (2020)
2010 – 2019
- 2019
- [j54]Toshiaki Katayama, Shuichi Kawashima, Shinobu Okamoto, Yuki Moriya, Hirokazu Chiba, Yuki Naito, Takatomo Fujisawa, Hiroshi Mori, Toshihisa Takagi:
TogoGenome/TogoStanza: modularized Semantic Web genome database. Database J. Biol. Databases Curation 2019: bay132 (2019) - [j53]Tatsuya Kushida, Kouji Kozaki, Takahiro Kawamura, Yuka Tateisi, Yasunori Yamamoto, Toshihisa Takagi:
Interconnection of Biological Knowledge Using NikkajiRDF and Interlinking Ontology for Biological Concepts. New Gener. Comput. 37(4): 525-549 (2019) - [c46]Tatsuya Kushida, Kouji Kozaki, Yasunori Yamamoto, Atsuko Yamaguchi, Takahiro Kawamura, Takako Nakagawa, Yuka Tateisi, Toshihisa Takagi:
Reconstruction of Hierarchical Structures in a Thesaurus-based Ontology through Curation by Domain Experts. ICBO 2019: 1 - [c45]Kouji Kozaki, Tatsuya Kushida, Yasunori Yamamoto, Toshihisa Takagi:
Building Knowledge Graph Across Different Subdomains Using Interlinking Ontology for Biomedical Concepts. JIST (2) 2019: 182-190 - [i2]Toshiaki Katayama, Shuichi Kawashima, Gos Micklem, Shin Kawano, Jin-Dong Kim, Simon Kocbek, Shinobu Okamoto, Yue Wang, Hongyan Wu, Atsuko Yamaguchi, Yasunori Yamamoto, Erick Antezana, Kiyoko F. Aoki-Kinoshita, Kazuharu Arakawa, Masaki Banno, Joachim Baran, Jerven T. Bolleman, Raoul Jean Pierre Bonnal, Hidemasa Bono, Jesualdo Tomás Fernández-Breis, Robert M. Buels, Matthew P. Campbell, Hirokazu Chiba, Peter J. A. Cock, Kevin Bretonnel Cohen, Michel Dumontier, Takatomo Fujisawa, Toyofumi Fujiwara, Leyla J. García, Pascale Gaudet, Emi Hattori, Robert Hoehndorf, Kotone Itaya, Maori Ito, Daniel Jamieson, Simon Jupp, Nick S. Juty, Alex Kalderimis, Fumihiro Kato, Hideya Kawaji, Takeshi Kawashima, Akira R. Kinjo, Yusuke Komiyama, Masaaki Kotera, Tatsuya Kushida, James Malone, Masaaki Matsubara, Satoshi Mizuno, Sayaka Mizutani, Hiroshi Mori, Yuki Moriya, Katsuhiko Murakami, Takeru Nakazato, Hiroyo Nishide, Yosuke Nishimura, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Hiromasa Ono, Yasset Pérez-Riverol, Daisuke Shinmachi, Andrea Splendiani, Francesco Strozzi, Shinya Suzuki, Junichi Takehara, Mark Thompson, Toshiaki Tokimatsu, Ikuo Uchiyama, Karin Verspoor, Mark D. Wilkinson, Sarala M. Wimalaratne, Issaku Yamada, Nozomi Yamamoto, Masayuki Yarimizu, Shoko Kawamoto, Toshihisa Takagi:
BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services. F1000Research 8: 1677 (2019) - 2018
- [j52]Shuichi Kawashima, Toshiaki Katayama, Hideki Hatanaka, Tatsuya Kushida, Toshihisa Takagi:
NBDC RDF portal: a comprehensive repository for semantic data in life sciences. Database J. Biol. Databases Curation 2018: bay123 (2018) - [j51]Yuichi Kodama, Jun Mashima, Takehide Kosuge, Eli Kaminuma, Osamu Ogasawara, Kousaku Okubo, Yasukazu Nakamura, Toshihisa Takagi:
DNA Data Bank of Japan: 30th anniversary. Nucleic Acids Res. 46(Database-Issue): D30-D35 (2018) - [j50]Ilene Karsch-Mizrachi, Toshihisa Takagi, Guy Cochrane:
The international nucleotide sequence database collaboration. Nucleic Acids Res. 46(Database-Issue): D48-D51 (2018) - [c44]Takuto Asakura, Jin-Dong Kim, Yasunori Yamamoto, Yuka Tateisi, Toshihisa Takagi:
A Quantitative Evaluation of Natural Language Question Interpretation for Question Answering Systems. JIST 2018: 215-231 - [c43]Tatsuya Kushida, Kouji Kozaki, Takahiro Kawamura, Yuka Tateisi, Yasunori Yamamoto, Toshihisa Takagi:
Inference of Functions, Roles, and Applications of Chemicals Using Linked Open Data and Ontologies. JIST 2018: 385-397 - [i1]Takuto Asakura, Jin-Dong Kim, Yasunori Yamamoto, Yuka Tateisi, Toshihisa Takagi:
A Quantitative Evaluation of Natural Language Question Interpretation for Question Answering Systems. CoRR abs/1809.07485 (2018) - 2017
- [j49]Jun Mashima, Yuichi Kodama, Takatomo Fujisawa, Toshiaki Katayama, Yoshihiro Okuda, Eli Kaminuma, Osamu Ogasawara, Kousaku Okubo, Yasukazu Nakamura, Toshihisa Takagi:
DNA Data Bank of Japan. Nucleic Acids Res. 45(Database-Issue): D25-D31 (2017) - [c42]Tatsuya Kushida, Kouji Kozaki, Yuka Tateisi, Katsutaro Watanabe, Takeshi Masuda, Katsuji Matsumura, Takahiro Kawamura, Toshihisa Takagi:
Efficient Construction of a New Ontology for Life Sciences by Sub-classifying Related Terms in the Japan Science, Technology Agency Thesaurus. ICBO 2017 - [c41]Tatsuya Kushida, Yuka Tateisi, Takeshi Masuda, Katsutaro Watanabe, Katsuji Matsumura, Takahiro Kawamura, Kouji Kozaki, Toshihisa Takagi:
Refined JST Thesaurus Extended with Data from Other Open Life Science Data Sources. JIST 2017: 35-48 - [c40]Morita Kazui, Toshihisa Takagi:
DrG at NTCIR-13: MedWeb Task. NTCIR 2017 - 2016
- [j48]Guy Cochrane, Ilene Karsch-Mizrachi, Toshihisa Takagi:
The International Nucleotide Sequence Database Collaboration. Nucleic Acids Res. 44(Database-Issue): 48-50 (2016) - [j47]Jun Mashima, Yuichi Kodama, Takehide Kosuge, Takatomo Fujisawa, Toshiaki Katayama, Hideki Nagasaki, Yoshihiro Okuda, Eli Kaminuma, Osamu Ogasawara, Kousaku Okubo, Yasukazu Nakamura, Toshihisa Takagi:
DNA data bank of Japan (DDBJ) progress report. Nucleic Acids Res. 44(Database-Issue): 51-57 (2016) - 2015
- [j46]Yuichi Kodama, Jun Mashima, Takehide Kosuge, Toshiaki Katayama, Takatomo Fujisawa, Eli Kaminuma, Osamu Ogasawara, Kousaku Okubo, Toshihisa Takagi, Yasukazu Nakamura:
The DDBJ Japanese Genotype-phenotype Archive for genetic and phenotypic human data. Nucleic Acids Res. 43(Database-Issue): 18-22 (2015) - 2014
- [j45]Takehide Kosuge, Jun Mashima, Yuichi Kodama, Takatomo Fujisawa, Eli Kaminuma, Osamu Ogasawara, Kousaku Okubo, Toshihisa Takagi, Yasukazu Nakamura:
DDBJ progress report: a new submission system for leading to a correct annotation. Nucleic Acids Res. 42(Database-Issue): 44-49 (2014) - 2013
- [j44]Osamu Ogasawara, Jun Mashima, Yuichi Kodama, Eli Kaminuma, Yasukazu Nakamura, Kousaku Okubo, Toshihisa Takagi:
DDBJ new system and service refactoring. Nucleic Acids Res. 41(Database-Issue): 25-29 (2013) - 2012
- [j43]Shin Kawano, Hiromasa Ono, Toshihisa Takagi, Hidemasa Bono:
Tutorial videos of bioinformatics resources: online distribution trial in Japan named TogoTV. Briefings Bioinform. 13(2): 258-268 (2012) - [j42]Jin-Dong Kim, Ngan L. T. Nguyen, Yue Wang, Jun'ichi Tsujii, Toshihisa Takagi, Akinori Yonezawa:
The Genia Event and Protein Coreference tasks of the BioNLP Shared Task 2011. BMC Bioinform. 13(S-11): S1 (2012) - [j41]Yuichi Kodama, Jun Mashima, Eli Kaminuma, Takashi Gojobori, Osamu Ogasawara, Toshihisa Takagi, Kousaku Okubo, Yasukazu Nakamura:
The DNA Data Bank of Japan launches a new resource, the DDBJ Omics Archive of functional genomics experiments. Nucleic Acids Res. 40(Database-Issue): 38-42 (2012) - 2011
- [j40]Satoko Yamamoto, Noriko Sakai, Hiromi Nakamura, Hiroshi Fukagawa, Ken Fukuda, Toshihisa Takagi:
INOH: ontology-based highly structured database of signal transduction pathways. Database J. Biol. Databases Curation 2011 (2011) - [j39]Yasunori Yamamoto, Atsuko Yamaguchi, Hidemasa Bono, Toshihisa Takagi:
Allie: a database and a search service of abbreviations and long forms. Database J. Biol. Databases Curation 2011 (2011) - [j38]Thanet Praneenararat, Toshihisa Takagi, Wataru Iwasaki:
Interactive, multiscale navigation of large and complicated biological networks. Bioinform. 27(8): 1121-1127 (2011) - [j37]Toshiaki Katayama, Mark D. Wilkinson, Rutger A. Vos, Takeshi Kawashima, Shuichi Kawashima, Mitsuteru Nakao, Yasunori Yamamoto, Hong-Woo Chun, Atsuko Yamaguchi, Shin Kawano, Jan Aerts, Kiyoko F. Aoki-Kinoshita, Kazuharu Arakawa, Bruno Aranda, Raoul Jean Pierre Bonnal, José María Fernández, Takatomo Fujisawa, Paul M. K. Gordon, Naohisa Goto, Syed Haider, Todd W. Harris, Takashi Hatakeyama, Isaac Ho, Masumi Itoh, Arek Kasprzyk, Nobuhiro Kido, Young-Joo Kim, Akira R. Kinjo, Fumikazu Konishi, Yulia Kovarskaya, Gregory Von Kuster, Alberto Labarga, Vachiranee Limviphuvadh, E. Luke McCarthy, Yasukazu Nakamura, Yunsun Nam, Kozo Nishida, Kunihiro Nishimura, Tatsuya Nishizawa, Soichi Ogishima, Tom Oinn, Shinobu Okamoto, Shujiro Okuda, Keiichiro Ono, Kazuki Oshita, Keun-Joon Park, Nicholas H. Putnam, Martin Senger, Jessica Severin, Yasumasa Shigemoto, Hideaki Sugawara, James Taylor, Oswaldo Trelles, Chisato Yamasaki, Riu Yamashita, Noriyuki Satoh, Toshihisa Takagi:
The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications. J. Biomed. Semant. 2: 4 (2011) - [j36]Sebastian Riedel, Rune Sætre, Hong-Woo Chun, Toshihisa Takagi, Jun'ichi Tsujii:
Bio-molecular Event Extraction with Markov Logic. Comput. Intell. 27(4): 558-582 (2011) - [j35]Eli Kaminuma, Takehide Kosuge, Yuichi Kodama, Hideo Aono, Jun Mashima, Takashi Gojobori, Hideaki Sugawara, Osamu Ogasawara, Toshihisa Takagi, Kousaku Okubo, Yasukazu Nakamura:
DDBJ progress report. Nucleic Acids Res. 39(Database-Issue): 22-27 (2011) - [c39]Atsuko Yamaguchi, Yasunori Yamamoto, Jin-Dong Kim, Toshihisa Takagi, Akinori Yonezawa:
Discriminative Application of String Similarity Methods to Chemical and Non-chemical Names for Biomedical Abbreviation Clustering. BIBM 2011: 544-549 - [c38]Jin-Dong Kim, Yue Wang, Toshihisa Takagi, Akinori Yonezawa:
Overview of Genia Event Task in BioNLP Shared Task 2011. BioNLP@ACL (Shared Task) 2011: 7-15 - [c37]Atsuko Yamaguchi, Yasunori Yamamoto, Jin-Dong Kim, Toshihisa Takagi, Akinori Yonezawa:
Discriminative Optimization of String Similarity and Its Application to Biomedical Abbreviation Clustering. ICMLA (2) 2011: 72-77 - 2010
- [j34]Natsu Ishii, Asako Koike, Yasunori Yamamoto, Toshihisa Takagi:
Figure classification in biomedical literature to elucidate disease mechanisms, based on pathways. Artif. Intell. Medicine 49(3): 135-143 (2010) - [j33]Kota Kasahara, Kengo Kinoshita, Toshihisa Takagi:
Ligand-binding site prediction of proteins based on known fragment-fragment interactions. Bioinform. 26(12): 1493-1499 (2010) - [j32]Toshiaki Katayama, Kazuharu Arakawa, Mitsuteru Nakao, Keiichiro Ono, Kiyoko F. Aoki-Kinoshita, Yasunori Yamamoto, Atsuko Yamaguchi, Shuichi Kawashima, Hong-Woo Chun, Jan Aerts, Bruno Aranda, Lord H. Barboza, Raoul Jean Pierre Bonnal, Richard M. Bruskiewich, Jan Christian Bryne, José María Fernández, Akira Funahashi, Paul M. K. Gordon, Naohisa Goto, Andreas Groscurth, Alex Gutteridge, Richard C. G. Holland, Yoshinobu Kano, Edward A. Kawas, Arnaud Kerhornou, Eri Kibukawa, Akira R. Kinjo, Michael Kuhn, Hilmar Lapp, Heikki Lehväslaiho, Hiroyuki Nakamura, Yasukazu Nakamura, Tatsuya Nishizawa, Chikashi Nobata, Tamotsu Noguchi, Thomas M. Oinn, Shinobu Okamoto, Stuart Owen, Evangelos Pafilis, Matthew R. Pocock, Pjotr Prins, René Ranzinger, Florian Reisinger, Lukasz Salwínski, Mark J. Schreiber, Martin Senger, Yasumasa Shigemoto, Daron M. Standley, Hideaki Sugawara, Toshiyuki Tashiro, Oswaldo Trelles, Rutger A. Vos, Mark D. Wilkinson, William S. York, Christian M. Zmasek, Kiyoshi Asai, Toshihisa Takagi:
The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. J. Biomed. Semant. 1: 8 (2010) - [j31]Eli Kaminuma, Jun Mashima, Yuichi Kodama, Takashi Gojobori, Osamu Ogasawara, Kousaku Okubo, Toshihisa Takagi, Yasukazu Nakamura:
DDBJ launches a new archive database with analytical tools for next-generation sequence data. Nucleic Acids Res. 38(Database-Issue): 33-38 (2010) - [j30]Toshiaki Katayama, Mitsuteru Nakao, Toshihisa Takagi:
TogoWS: integrated SOAP and REST APIs for interoperable bioinformatics Web services. Nucleic Acids Res. 38(Web-Server-Issue): 706-711 (2010) - [c36]Jin-Dong Kim, Yasunori Yamamoto, Atsuko Yamaguchi, Mitsuteru Nakao, Kenta Oouchida, Hong-Woo Chun, Toshihisa Takagi:
Natural Language Query Processing for Life Science Knowledge - Position Paper. AMT 2010: 158-165 - [c35]Steven B. Kraines, Weisen Guo, Daisuke Hoshiyama, Haruo Mizutani, Toshihisa Takagi:
Generating Literature-based Knowledge Discoveries in Life Sciences using Relationship Associations. KDIR 2010: 35-44 - [c34]Steven B. Kraines, Weisen Guo, Daisuke Hoshiyama, Takaki Makino, Haruo Mizutani, Yoshihiro Okuda, Yo Shidahara, Toshihisa Takagi:
Literature-Based Knowledge Discovery from Relationship Associations Based on a DL Ontology Created from MeSH. IC3K 2010: 87-106 - [c33]Steven B. Kraines, Takaki Makino, Weisen Guo, Haruo Mizutani, Toshihisa Takagi:
Bridging the Knowledge Gap between Research and Education through Textbooks. ICWL 2010: 121-130 - [c32]Steven B. Kraines, Weisen Guo, Toshihisa Takagi:
Authoring Computer-Understandable Semantic Summaries of Life Science Articles Optimized for Knowledge Mining. ICDM (Workshops) 2010: 133-143 - [c31]Mihoko Otake, Motoichiro Kato, Toshihisa Takagi, Shuichi Iwata, Hajime Asama, Jun Ota:
Multiscale Service Design Method and Its Application to Sustainable Service for Prevention and Recovery from Dementia. JSAI-isAI Workshops 2010: 321-330
2000 – 2009
- 2009
- [j29]Nobutaka Mitsuhashi, Kaori Fujieda, Takuro Tamura, Shoko Kawamoto, Toshihisa Takagi, Kousaku Okubo:
BodyParts3D: 3D structure database for anatomical concepts. Nucleic Acids Res. 37(Database-Issue): 782-785 (2009) - [j28]Takeru Nakazato, Hidemasa Bono, Hideo Matsuda, Toshihisa Takagi:
Gendoo: Functional profiling of gene and disease features using MeSH vocabulary. Nucleic Acids Res. 37(Web-Server-Issue): 166-169 (2009) - [c30]Sebastian Riedel, Hong-Woo Chun, Toshihisa Takagi, Jun'ichi Tsujii:
A Markov Logic Approach to Bio-Molecular Event Extraction. BioNLP@HLT-NAACL (Shared Task) 2009: 41-49 - [c29]Tatsuya Kushida, Takao Asanuma, Yoshihiro Okuda, Yo Shidahara, Toshihisa Takagi:
Collection of Disease Networks by Hybrid Curation Method and the Application for Pathway Analysis. CISIS 2009: 800-806 - [c28]Asako Koike, Toshihisa Takagi:
Classifying Biomedical Figures Using Combination of Bag of Keypoints and Bag of Words. CISIS 2009: 848-853 - [c27]Mihoko Otake, Motoichiro Kato, Toshihisa Takagi, Hajime Asama:
Coimagination Method: Communication Support System with Collected Images and Its Evaluation via Memory Task. HCI (5) 2009: 403-411 - [c26]Kenta Oouchida, Jin-Dong Kim, Toshihisa Takagi, Jun'ichi Tsujii:
GuideLink: A Corpus Annotation System that Integrates the Management of Annotation Guidelines. PACLIC 2009: 771-778 - [c25]Mihoko Otake, Motoichiro Kato, Toshihisa Takagi, Hajime Asama:
Development of coimagination method towards cognitive enhancement via image based interactive communication. RO-MAN 2009: 835-840 - 2008
- [c24]Natsu Ishii, Asako Koike, Yasunori Yamamoto, Toshihisa Takagi:
Figure Classification in Biomedical Literature towards Figure Mining. BIBM 2008: 263-269 - [c23]Hong-Woo Chun, Chisato Yamasaki, Naomi Saichi, Masayuki Tanaka, Teruyoshi Hishiki, Tadashi Imanishi, Takashi Gojobori, Jin-Dong Kim, Jun'ichi Tsujii, Toshihisa Takagi:
Prediction of Protein Sub-cellular Localization using Information from Texts and Sequences. BioNLP 2008: 90-91 - [c22]Takaki Makino, Toshihisa Takagi:
On-line discovery of temporal-difference networks. ICML 2008: 632-639 - [c21]Mihoko Otake, Toshihisa Takagi, Hajime Asama:
Open brain simulator estimating internal state of human through external observation towards human biomechatronics. ICRA 2008: 1089-1093 - 2007
- [j27]Yasunori Yamamoto, Toshihisa Takagi:
OReFiL: an online resource finder for life sciences. BMC Bioinform. 8 (2007) - [j26]Asako Koike, Toshihisa Takagi:
Knowledge discovery based on an implicit and explicit conceptual network. J. Assoc. Inf. Sci. Technol. 58(1): 51-65 (2007) - [j25]Yasunori Yamamoto, Toshihisa Takagi:
Biomedical knowledge navigation by literature clustering. J. Biomed. Informatics 40(2): 114-130 (2007) - [j24]Mihoko Otake, Kohei Arai, Motoichiro Kato, Takaki Maeda, Yusuke Ikemoto, Kuniaki Kawabata, Toshihisa Takagi, Hajime Asama:
Experimental Analysis of the Attribution of Own Actions to the Intention of Self or Others by the Multiple Forward Models. J. Robotics Mechatronics 19(4): 482-488 (2007) - [c20]Wataru Iwasaki, Toshihisa Takagi:
Reconstruction of highly heterogeneous gene-content evolution across the three domains of life. ISMB/ECCB (Supplement of Bioinformatics) 2007: 230-239 - [c19]Mihoko Otake, Kohei Arai, Motoichiro Kato, Takaki Maeda, Yusuke Ikemoto, Kuniaki Kawabata, Toshihisa Takagi, Hajime Asama:
Experimental analysis and computational simulation of the attribution of own actions by the multiple forward models. ROBIO 2007: 1417-1421 - 2006
- [j23]Shinsuke Dohkan, Asako Koike, Toshihisa Takagi:
Improving the Performance of an SVM-Based Method for Predicting Protein-Protein Interactions. Silico Biol. 6(6): 515-529 (2006) - [c18]Tatsuya Kushida, Toshihisa Takagi, Ken-ichiro Fukuda:
Event Ontology: A Pathway-Centric Ontology for Biological Processes. Pacific Symposium on Biocomputing 2006: 152-163 - 2005
- [j22]Asako Koike, Yoshiki Niwa, Toshihisa Takagi:
Automatic extraction of gene/protein biological functions from biomedical text. Bioinform. 21(7): 1227-1236 (2005) - [j21]Hiroko Ao, Toshihisa Takagi:
Research Paper: ALICE: An Algorithm to Extract Abbreviations from MEDLINE. J. Am. Medical Informatics Assoc. 12(5): 576-586 (2005) - [j20]Kikuya Kato, Riu Yamashita, Ryo Matoba, Morito Monden, Shinzaburo Noguchi, Toshihisa Takagi, Kenta Nakai:
Cancer gene expression database (CGED): a database for gene expression profiling with accompanying clinical information of human cancer tissues. Nucleic Acids Res. 33(Database-Issue): 533-536 (2005) - [c17]Yasunori Yamamoto, Toshihisa Takagi:
A Sentence Classification System for Multi Biomedical Literature Summarization. ICDE Workshops 2005: 1163 - 2004
- [j19]Goro Terai, Toshihisa Takagi:
Predicting rules on organization of cis-regulatory elements, taking the order of elements into account. Bioinform. 20(7): 1119-1128 (2004) - [j18]Yutaka Suzuki, Riu Yamashita, Matsuyuki Shirota, Yuta Sakakibara, Joe Chiba, Junko Mizushima-Sugano, Alexander E. Kel, Takahiro Arakawa, Piero Carninci, Jun Kawai, Yoshihide Hayashizaki, Toshihisa Takagi, Kenta Nakai, Sumio Sugano:
Large-scale collection and characterization of promoters of human and mouse genes. Silico Biol. 4(4): 429-444 (2004) - [j17]Takako Takai-Igarashi, Toshihisa Takagi, Holger Michael, Edgar Wingender:
Preface - Third "Ontology Workshop on Ontology and Genomes". Silico Biol. 5(1): 1-3 (2004) - [j16]Asako Koike, Toshihisa Takagi:
PRIME: automatically extracted PRotein Interactions and Molecular Information databas. Silico Biol. 5(1): 9-20 (2004) - [c16]Ken-ichiro Fukuda, Toshihisa Takagi:
A Pathway Editor for Literature-based Knowledge Curation. APBC 2004: 339-344 - [c15]Shinsuke Dohkan, Asako Koike, Toshihisa Takagi:
Prediction of Protein-Protein Interactions Using Support Vector Machines. BIBE 2004: 576-586 - [c14]Yasunori Yamamoto, Toshihisa Takagi:
A Practical Partial Parser for Biomedical Literature Summarization. NLUCS 2004: 75-85 - 2003
- [j15]Natalia V. Poluliakh, Toshihisa Takagi, Kenta Nakai:
MELINA: motif extraction from promoter regions of potentially co-regulated genes. Bioinform. 19(3): 423-424 (2003) - [j14]Takako Takai-Igarashi, Toshihisa Takagi, Edgar Wingender:
Preface: The Second Workshop on Ontology and Genome. Silico Biol. 4(1): 1-3 (2003) - [j13]Ken-ichiro Fukuda, Yuki Yamagata, Toshihisa Takagi:
FREX: A query interface for biological processes with hierarchical and recursive structures. Silico Biol. 4(1): 63-79 (2003) - [c13]Tetsushi Yada, Yasushi Totoki, Y. Takaeda, Yasubumi Sakaki, Toshihisa Takagi:
DIGIT: A Novel Gene Finding Program by Combining Gene-Finders. Pacific Symposium on Biocomputing 2003: 375-387 - [c12]Hiroko Ao, Yasunori Yamamoto, Toshihisa Takagi:
A Method to Retrieve Papers from MEDLINE: PETER System. TREC 2003: 806-809 - 2002
- [j12]Mika Hirakawa, Toshihiro Tanaka, Yoichi Hashimoto, Masako Kuroda, Toshihisa Takagi, Yusuke Nakamura:
JSNP: a database of common gene variations in the Japanese population. Nucleic Acids Res. 30(1): 158-162 (2002) - 2001
- [j11]Toshihide Ono, Haretsugu Hishigaki, Akira Tanigami, Toshihisa Takagi:
Automated extraction of information on protein-protein interactions from the biological literature. Bioinform. 17(1): 155-161 (2001) - [j10]Ken-ichiro Fukuda, Toshihisa Takagi:
Knowledge representation of signal transduction pathways. Bioinform. 17(9): 829-837 (2001) - [c11]Takako Takai-Igarashi, Toshihisa Takagi:
Ontology and functional genomics. German Conference on Bioinformatics 2001: 46 - 2000
- [j9]Mikio Yoshida, Ken-ichiro Fukuda, Toshihisa Takagi:
PNAD-CSS: a workbench for constructing a protein name abbreviation dictionary. Bioinform. 16(2): 169-175 (2000)
1990 – 1999
- 1999
- [j8]Tatsuhiko Tsunoda, Toshihisa Takagi:
Estimating transcription factor bindability on DNA. Bioinform. 15(7): 622-630 (1999) - [c10]Katsuhiko Murakami, Toshihisa Takagi:
Clustering and Detection of 5' Splice Sites of mRNA by k Weight-Matrices Model. Pacific Symposium on Biocomputing 1999: 171-181 - [c9]Tatsuhiko Tsunoda, Masao Fukagawa, Toshihisa Takagi:
Time and Memory Efficient Algorithm for Extracting Palindromic and Repetitive Subsequences in Nucleic Acid Sequences. Pacific Symposium on Biocomputing 1999: 202-213 - 1998
- [j7]Katsuhiko Murakami, Toshihisa Takagi:
Gene recognition by combination of several gene-finding programs. Bioinform. 14(8): 665-675 (1998) - 1997
- [j6]Y. Tsukamoto, Kyoko Takiguchi, Kenji Satou, Emiko Furuichi, Toshihisa Takagi, Satoru Kuhara:
Application of a deductive database system to search for topological and similar three-dimensional structures in protein. Comput. Appl. Biosci. 13(2): 183-190 (1997) - [c8]Yoshihiro Ohta, Yasunori Yamamoto, Tomoko Okazaki, Ikuo Uchiyama, Toshihisa Takagi:
Automatic Construction of Knowledge Base from Biological Papers. ISMB 1997: 218-225 - [c7]Kenji Satou, Toshihide Ono, Yoshihisa Yamamura, Emiko Furuichi, Satoru Kuhara, Toshihisa Takagi:
Extraction of Substructures of Proteins Essential to their Biological Functions by a Data Mining Technique. ISMB 1997: 254-257 - 1994
- [c6]Takahiko Suzuki, Toshihisa Takagi, Satoru Kuhara, Minoru Kanehisa:
Development of an integrated Database for Genome Mapping and Nucleotide Sequences. HICSS (5) 1994: 68-76 - [c5]Susumu Goto, Norihiro Sakamoto, Toshihisa Takagi:
A Deductive Object-Oriented Language for Integrated Genome Databaser. HICSS (5) 1994: 108-110 - [c4]Kenji Satou, Emiko Furuichi, Kyoko Takiguchi, Satoru Kuhara, Toshihisa Takagi:
Application of a Deductive Database System PACADE toward Discovery of Clusters of Similar Structures in Proteins. HICSS (5) 1994: 160-170 - 1993
- [j5]Kenji Satou, Emiko Furuichi, Kyoko Takiguchi, Toshihisa Takagi, Satoru Kuhara:
A deductive database system PACADE for analyzing 3-D and secondary structures of protein. Comput. Appl. Biosci. 9(3): 259-265 (1993) - [j4]Norihiro Sakamoto, Toshihisa Takagi, Yasubumi Sakaki:
Development of the Overlapping Oligonucleotide Database and its application to signal sequence search of the human genome. Comput. Appl. Biosci. 9(4): 427-434 (1993) - [c3]Susumu Goto, Norihiro Sakamoto, Toshihisa Takagi:
Object-Oriented Database with Rule-Based Query Interface for Genomic Computation. DASFAA 1993: 65-72 - 1992
- [j3]Toshihisa Takagi, Takahiko Suzuki, Susumu Goto, Kazuo Ushijima:
Evaluation of a deductive database system for CAD applications. Syst. Comput. Jpn. 23(13): 15-27 (1992) - 1991
- [j2]Neng-Fa Zhou, Kazuo Ushijima, Toshihisa Takagi:
Bidirectional inference of mode information for logic programs. Syst. Comput. Jpn. 22(4): 1-9 (1991) - 1990
- [c2]Neng-Fa Zhou, Toshihisa Takagi, Kazuo Ushijima:
A Matching Tree Oriented Abstract Machine for Prolog. ICLP 1990: 159-173
1980 – 1989
- 1985
- [c1]Toshihisa Takagi, Fumihiro Matsuo, Shouichi Futamura, Kazuo Ushijima:
Implementation of Inferential Relational Database System. FODO 1985: 539-546 - 1984
- [j1]Satoru Kuhara, Fumihiro Matsuo, Syoichi Futamura, Atsushi Fujita, Takeshi Shinohara, Toshihisa Takagi, Yoshiyuki Sakaki:
GENAS: a database system for nucleic acid sequence analysis. Nucleic Acids Res. 12(1): 89-99 (1984)