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Caroline Colijn
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2020 – today
- 2024
- [i1]Cédric Chauve, Caroline Colijn, Louxin Zhang:
A Vector Representation for Phylogenetic Trees. CoRR abs/2405.07110 (2024) - 2023
- [j16]Shijia Wang
, Shufei Ge, Benjamin Sobkowiak, Liangliang Wang, Louis Grandjean
, Caroline Colijn, Lloyd T. Elliott
:
Genome-Wide Association with Uncertainty in the Genetic Similarity Matrix. J. Comput. Biol. 30(2): 189-203 (2023) - [j15]Nicola Mulberry
, Alexander R. Rutherford, Caroline Colijn:
Pneumococcal population dynamics: Investigating vaccine-induced changes through multiscale modelling. PLoS Comput. Biol. 19(12) (2023) - 2021
- [j14]Shijia Wang
, Shufei Ge
, Caroline Colijn, Priscila Biller, Liangliang Wang, Lloyd T. Elliott
:
Estimating Genetic Similarity Matrices Using Phylogenies. J. Comput. Biol. 28(6): 587-600 (2021) - [j13]Paul F. Tupper
, Caroline Colijn
:
COVID-19 in schools: Mitigating classroom clusters in the context of variable transmission. PLoS Comput. Biol. 17(7) (2021) - 2020
- [j12]Cornelia Metzig
, Caroline Colijn:
A Maximum Entropy Method for the Prediction of Size Distributions. Entropy 22(3): 312 (2020) - [j11]Sean C. Anderson
, Andrew M. Edwards, Madi Yerlanov
, Nicola Mulberry
, Jessica E. Stockdale
, Sarafa A. Iyaniwura, Rebeca C. Falcao
, Michael C. Otterstatter
, Michael A. Irvine
, Naveed Z. Janjua
, Daniel Coombs, Caroline Colijn:
Quantifying the impact of COVID-19 control measures using a Bayesian model of physical distancing. PLoS Comput. Biol. 16(12) (2020) - [j10]Cornelia Metzig
, Matthew Gould, Roshan Noronha
, Roshani Abbey, Mark Sandler
, Caroline Colijn:
Classification of origin with feature selection and network construction for folk tunes. Pattern Recognit. Lett. 133: 356-364 (2020)
2010 – 2019
- 2019
- [j9]Cornelia Metzig
, Oliver Ratmann
, Daniela Bezemer, Caroline Colijn
:
Phylogenies from dynamic networks. PLoS Comput. Biol. 15(2) (2019) - 2017
- [j8]Don Klinkenberg
, Jantien A. Backer
, Xavier Didelot
, Caroline Colijn
, Jacco Wallinga
:
Simultaneous inference of phylogenetic and transmission trees in infectious disease outbreaks. PLoS Comput. Biol. 13(5) (2017) - [j7]Nick Fyson, Jerry King, Thomas Belcher
, Andrew Preston
, Caroline Colijn
:
A curated genome-scale metabolic model of Bordetella pertussis metabolism. PLoS Comput. Biol. 13(7) (2017) - 2016
- [j6]Giacomo Plazzotta, Caroline Colijn:
Asymptotic frequency of shapes in supercritical branching trees. J. Appl. Probab. 53(4): 1143-1155 (2016) - [j5]Leonid Chindelevitch
, Caroline Colijn, Prashini Moodley, Douglas Wilson, Ted Cohen
:
ClassTR: Classifying Within-Host Heterogeneity Based on Tandem Repeats with Application to Mycobacterium tuberculosis Infections. PLoS Comput. Biol. 12(2) (2016) - 2013
- [j4]Katy Robinson, Nick Fyson, Ted Cohen
, Christophe Fraser
, Caroline Colijn:
How the Dynamics and Structure of Sexual Contact Networks Shape Pathogen Phylogenies. PLoS Comput. Biol. 9(6) (2013) - 2011
- [j3]Kuhn Ip, Caroline Colijn, Desmond S. Lun:
Analysis of complex metabolic behavior through pathway decomposition. BMC Syst. Biol. 5: 91 (2011)
2000 – 2009
- 2009
- [j2]Caroline Colijn, Aaron Brandes, Jeremy Zucker
, Desmond S. Lun, Brian Weiner
, Maha R. Farhat
, Tan-Yun Cheng, D. Branch Moody, Megan Murray, James E. Galagan
:
Interpreting Expression Data with Metabolic Flux Models: Predicting Mycobacterium tuberculosis Mycolic Acid Production. PLoS Comput. Biol. 5(8) (2009) - 2007
- [j1]Caroline Colijn, Michael C. Mackey
:
Bifurcation and Bistability in a Model of Hematopoietic Regulation. SIAM J. Appl. Dyn. Syst. 6(2): 378-394 (2007)
Coauthor Index

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