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Luciano Milanesi
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2020 – today
- 2021
- [j87]Ettore Mosca
, Matteo Bersanelli, Tommaso Matteuzzi, Noemi Di Nanni, Gastone C. Castellani, Luciano Milanesi, Daniel Remondini:
Characterization and comparison of gene-centered human interactomes. Briefings Bioinform. 22(6) (2021) - 2020
- [j86]Noemi Di Nanni
, Matteo Gnocchi, Marco Moscatelli, Luciano Milanesi, Ettore Mosca
:
Gene relevance based on multiple evidences in complex networks. Bioinform. 36(3): 865-871 (2020) - [j85]Andrea Calabria
, Stefano Beretta, Ivan Merelli, Giulio Spinozzi, Stefano Brasca, Yuri Pirola
, Fabrizio Benedicenti, Erika Tenderini, Paola Bonizzoni, Luciano Milanesi, Eugenio Montini
:
γ-TRIS: a graph-algorithm for comprehensive identification of vector genomic insertion sites. Bioinform. 36(5): 1622-1624 (2020) - [j84]Simone Pernice
, Laura Follia, Gianfranco Balbo, Luciano Milanesi, Giulia Sartini, Niccoló Totis, Pietro Lió
, Ivan Merelli, Francesca Cordero, Marco Beccuti:
Integrating Petri Nets and Flux Balance Methods in Computational Biology Models: a Methodological and Computational Practice. Fundam. Informaticae 171(1-4): 367-392 (2020)
2010 – 2019
- 2019
- [j83]Noemi Di Nanni
, Marco Moscatelli, Matteo Gnocchi, Luciano Milanesi
, Ettore Mosca
:
isma: an R package for the integrative analysis of mutations detected by multiple pipelines. BMC Bioinform. 20(1): 107:1-107:9 (2019) - [j82]Paolo Romano, Arnaud Céol
, Andreas Dräger
, Antonino Fiannaca, Rosalba Giugno, Massimo La Rosa, Luciano Milanesi
, Ulrich Pfeffer, Riccardo Rizzo, Soo-Yong Shin, Junfeng Xia, Alfonso Urso:
The 2017 Network Tools and Applications in Biology (NETTAB) workshop: aims, topics and outcomes. BMC Bioinform. 20-S(4): 125:1-125:9 (2019) - 2018
- [j81]Marco Moscatelli, Andrea Manconi
, Mauro Pessina, Giovanni Fellegara, Stefano Rampoldi, Luciano Milanesi
, Andrea Casasco, Matteo Gnocchi:
An infrastructure for precision medicine through analysis of big data. BMC Bioinform. 19-S(10): 257-267 (2018) - [j80]Stefano Beretta
, Mauro Castelli
, Luis Muñoz
, Leonardo Trujillo
, Yuliana Martínez, Ales Popovic
, Luciano Milanesi
, Ivan Merelli
:
A Scalable Genetic Programming Approach to Integrate miRNA-Target Predictions: Comparing Different Parallel Implementations of M3GP. Complex. 2018: 4963139:1-4963139:13 (2018) - 2017
- [j79]Riccardo Panero, Antonio Rinaldi
, Domenico Memoli
, Giovanni Nassa, Maria Ravo
, Francesca Rizzo
, Roberta Tarallo
, Luciano Milanesi
, Alessandro Weisz
, Giorgio Giurato
:
iSmaRT: a toolkit for a comprehensive analysis of small RNA-Seq data. Bioinform. 33(6): 938-940 (2017) - [j78]Riccardo Panero, Antonio Rinaldi, Domenico Memoli, Giovanni Nassa, Maria Ravo
, Francesca Rizzo
, Roberta Tarallo, Luciano Milanesi, Alessandro Weisz
, Giorgio Giurato:
iSmaRT: a toolkit for a comprehensive analysis of small RNA-Seq data. Bioinform. 33(24): 4050 (2017) - [j77]Giulio Spinozzi
, Andrea Calabria
, Stefano Brasca, Stefano Beretta, Ivan Merelli, Luciano Milanesi
, Eugenio Montini
:
VISPA2: a scalable pipeline for high-throughput identification and annotation of vector integration sites. BMC Bioinform. 18(1): 520:1-520:12 (2017) - [j76]Fabio Tordini
, Maurizio Drocco
, Claudia Misale, Luciano Milanesi
, Pietro Liò
, Ivan Merelli, Massimo Torquati
, Marco Aldinucci:
NuChart-II: The road to a fast and scalable tool for Hi-C data analysis. Int. J. High Perform. Comput. Appl. 31(3): 196-211 (2017) - [c46]Stefano Beretta, Lucia Morganti, Elena Corni, Andrea Ferraro, Daniele Cesini
, Daniele D'Agostino
, Luciano Milanesi
, Ivan Merelli:
Low-Power Architectures for miRNA-Target Genome Wide Analysis. PDP 2017: 309-312 - [i2]Carlo Maj, Elena Milanesi, Massimo Gennarelli, Luciano Milanesi, Ivan Merelli:
Epistasis analysis reveals associations between gene variants and bipolar disorder. PeerJ Prepr. 5: e3242 (2017) - 2016
- [j75]Gastone C. Castellani, Giulia Menichetti
, Paolo Garagnani, Maria Giulia Bacalini
, Chiara Pirazzini, Claudio Franceschi, Sebastiano Collino, Claudia Sala
, Daniel Remondini
, Enrico Giampieri, Ettore Mosca
, Matteo Bersanelli, Silvia Vitali, Ìtalo Faria do Valle
, Pietro Liò
, Luciano Milanesi
:
Systems medicine of inflammaging. Briefings Bioinform. 17(3): 527-540 (2016) - [j74]Yoli Shavit, Ivan Merelli, Luciano Milanesi
, Pietro Liò
:
How computer science can help in understanding the 3D genome architecture. Briefings Bioinform. 17(5): 733-744 (2016) - [j73]Luciano Milanesi
, Alessandro Guffanti, Giancarlo Mauri
, Marco Masseroli:
BITS 2015: the annual meeting of the Italian Society of Bioinformatics. BMC Bioinform. 17(S-12): 1-4 (2016) - [j72]Andrea Manconi, Marco Moscatelli, Giuliano Armano, Matteo Gnocchi, Alessandro Orro, Luciano Milanesi
:
Removing duplicate reads using graphics processing units. BMC Bioinform. 17(S-12): 59-71 (2016) - [j71]Matteo Bersanelli, Ettore Mosca
, Daniel Remondini
, Enrico Giampieri, Claudia Sala
, Gastone C. Castellani, Luciano Milanesi
:
Methods for the integration of multi-omics data: mathematical aspects. BMC Bioinform. 17(S-2): 15 (2016) - [j70]Claudia Sala
, Silvia Vitali, Enrico Giampieri, Ìtalo Faria do Valle
, Daniel Remondini
, Paolo Garagnani, Matteo Bersanelli, Ettore Mosca
, Luciano Milanesi
, Gastone C. Castellani:
Stochastic neutral modelling of the Gut Microbiota's relative species abundance from next generation sequencing data. BMC Bioinform. 17(S-2): 16 (2016) - [j69]Federica Chiappori
, Luca Mattiazzi, Luciano Milanesi
, Ivan Merelli:
A novel molecular dynamics approach to evaluate the effect of phosphorylation on multimeric protein interface: the αB-Crystallin case study. BMC Bioinform. 17(S-4): 57 (2016) - [j68]Emanuele Manca, Andrea Manconi, Alessandro Orro, Giuliano Armano, Luciano Milanesi
:
CUDA-quicksort: an improved GPU-based implementation of quicksort. Concurr. Comput. Pract. Exp. 28(1): 21-43 (2016) - [c45]Marco Moscatelli, Andrea Manconi, Matteo Gnocchi, Luciano Milanesi:
A Infrastructure for Disease Prevention and Precision Medicine. KDWeb 2016 - [c44]Stefano Beretta, Mauro Castelli
, Yuliana Martínez, Luis Muñoz
, Sara Silva
, Leonardo Trujillo
, Luciano Milanesi
, Ivan Merelli:
A Machine Learning Approach for the Integration of miRNA-Target Predictions. PDP 2016: 528-534 - [c43]Elisabetta Ronchieri
, Daniele D'Agostino
, Luciano Milanesi
, Ivan Merelli:
MicroRNA-Target Interaction: A Parallel Approach for Computing Pairing Energy. PDP 2016: 535-540 - 2015
- [c42]Fabio Tordini, Ivan Merelli, Pietro Liò
, Luciano Milanesi
, Marco Aldinucci
:
NuchaRt: Embedding High-Level Parallel Computing in R for Augmented Hi-C Data Analysis. CIBB 2015: 259-272 - [c41]Fabio Tordini
, Maurizio Drocco
, Claudia Misale
, Luciano Milanesi
, Pietro Liò
, Ivan Merelli, Marco Aldinucci
:
Parallel Exploration of the Nuclear Chromosome Conformation with NuChart-II. PDP 2015: 725-732 - 2014
- [j67]Andrea Manconi, Alessandro Orro, Emanuele Manca, Giuliano Armano, Luciano Milanesi
:
A tool for mapping Single Nucleotide Polymorphisms using Graphics Processing Units. BMC Bioinform. 15(S-1): S10 (2014) - [j66]Federica Viti
, Silvia Scaglione
, Alessandro Orro, Luciano Milanesi
:
Guidelines for managing data and processes in bone and cartilage tissue engineering. BMC Bioinform. 15(S-1): S14 (2014) - [j65]Daniele D'Agostino
, Andrea Clematis
, Sergio Decherchi
, Walter Rocchia
, Luciano Milanesi
, Ivan Merelli
:
CUDA accelerated molecular surface generation. Concurr. Comput. Pract. Exp. 26(10): 1819-1831 (2014) - [c40]Fabio Tordini
, Maurizio Drocco
, Ivan Merelli, Luciano Milanesi
, Pietro Liò
, Marco Aldinucci
:
NuChart-II: A Graph-Based Approach for Analysis and Interpretation of Hi-C Data. CIBB 2014: 298-311 - [c39]Ivan Merelli, Ettore Mosca, Daniele Cesini, Elisabetta Ronchieri, Luciano Milanesi:
Evaluating mixed HTC/cloud approaches for parameter sweep applications in systems biology. IWBBIO 2014: 551-562 - [c38]Elisabetta Ronchieri
, Daniele Cesini
, Daniele D'Agostino
, Vincenzo Ciaschini, Gianni Dalla Torre
, Paolo Cozzi, Davide Salomoni, Andrea Clematis
, Luciano Milanesi
, Ivan Merelli
:
The WNoDeS Cloud Virtualization Framework: A Macromolecular Surface Analysis Application Case Study. PDP 2014: 218-222 - [c37]Giulia Pasquale
, Carlo Maj
, Andrea Clematis
, Ettore Mosca
, Luciano Milanesi
, Ivan Merelli
, Daniele D'Agostino
:
A CUDA Implementation of the Spatial TAU-Leaping in Crowded Compartments (STAUCC) Simulator. PDP 2014: 609-616 - 2013
- [j64]Ivan Merelli
, Andrea Calabria
, Paolo Cozzi
, Federica Viti
, Ettore Mosca
, Luciano Milanesi
:
SNPranker 2.0: a gene-centric data mining tool for diseases associated SNP prioritization in GWAS. BMC Bioinform. 14(S-1): S9 (2013) - [j63]Carlo Maj
, Ettore Mosca
, Ivan Merelli
, Giancarlo Mauri
, Luciano Milanesi
:
Sensitivity Analysis for Studying the Relation between biochemical reactions and metabolic phenotypes. J. Bioinform. Comput. Biol. 11(1) (2013) - [c36]Mohammad Ali Moni, Pietro Liò, Luciano Milanesi:
Comparing Viral (HIV) and Bacterial (Staphylococcus aureus) Infection of the Bone Tissue. BIOINFORMATICS 2013: 196-201 - [c35]Ettore Mosca
, Ivan Merelli
, Luciano Milanesi
, Andrea Clematis
, Daniele D'Agostino
:
A Parallel Implementation of the Stau-DPP Stochastic Simulator for the Modelling of Biological Systems. PDP 2013: 427-431 - 2012
- [j62]Andrea Manconi
, Eloisa Vargiu
, Giuliano Armano, Luciano Milanesi
:
Literature Retrieval and Mining in Bioinformatics: State of the Art and Challenges. Adv. Bioinformatics 2012: 573846:1-573846:10 (2012) - [j61]Ivan Merelli
, Federica Viti
, Luciano Milanesi
:
IBDsite: a Galaxy-interacting, integrative database for supporting inflammatory bowel disease high throughput data analysis. BMC Bioinform. 13(S-14): S5 (2012) - [j60]Victor Maojo, Martin Fritts, Fernando Martín-Sánchez
, Diana de la Iglesia, Raul E. Cachau, Miguel García-Remesal, José Crespo, Joyce A. Mitchell, Alberto Anguita
, Nathan Baker
, José María Barreiro, Sonia E. Benitez, Guillermo de la Calle
, Julio C. Facelli
, Peter Ghazal, Antoine Geissbühler, Fernando D. González Nilo
, Norbert M. Graf
, Pierre Grangeat
, Isabel Hermosilla, Rada Hussein
, Josipa Kern
, Sabine Koch
, Yannick Legré, Victoria López-Alonso
, Guillermo López-Campos
, Luciano Milanesi
, Vassilis Moustakis, Cristian R. Munteanu
, Paula Otero
, Alejandro Pazos
, David Pérez-Rey, George Potamias, Ferran Sanz
, Casimir A. Kulikowski:
Nanoinformatics: developing new computing applications for nanomedicine. Computing 94(6): 521-539 (2012) - [j59]Federica Chiappori
, Ivan Merelli
, Giorgio Colombo
, Luciano Milanesi
, Giulia Morra
:
Molecular Mechanism of Allosteric Communication in Hsp70 Revealed by Molecular Dynamics Simulations. PLoS Comput. Biol. 8(12) (2012) - [c34]Daniele D'Agostino
, Andrea Clematis
, Alessandro Guffanti, Luciano Milanesi
, Ivan Merelli
:
A CUDA-based Implementation of the SSAKE Genomics Application. PDP 2012: 612-616 - 2011
- [j58]Dario Corrada, Federica Viti
, Ivan Merelli
, Cristina Battaglia
, Luciano Milanesi
:
myMIR: a genome-wide microRNA targets identification and annotation tool. Briefings Bioinform. 12(6): 588-600 (2011) - [j57]Roberta Alfieri, Ezio Bartocci
, Emanuela Merelli
, Luciano Milanesi
:
Modeling the cell cycle: From deterministic models to hybrid systems. Biosyst. 105(1): 34-40 (2011) - [j56]Roberto Barbera
, Giuseppe Andronico, Giacinto Donvito
, Alberto Falzone, J. J. Keijser, Giuseppe La Rocca
, Luciano Milanesi
, Giorgio Pietro Maggi, Saverio Vicario
:
A grid portal with robot certificates for bioinformatics phylogenetic analyses. Concurr. Comput. Pract. Exp. 23(3): 246-255 (2011) - [j55]Federica Viti
, Ivan Merelli
, Andrea Calabria
, Paolo Cozzi, Ettore Mosca
, Roberta Alfieri
, Luciano Milanesi
:
Ontology-based resources for bioinformatics analysis. Int. J. Metadata Semant. Ontologies 6(1): 35-45 (2011) - [j54]Ivan Merelli
, Paolo Cozzi
, Daniele D'Agostino
, Andrea Clematis
, Luciano Milanesi
:
Image-Based Surface Matching Algorithm Oriented to Structural Biology. IEEE ACM Trans. Comput. Biol. Bioinform. 8(4): 1004-1016 (2011) - [c33]Luna Dimitrio, Roberto Natalini, Luciano Milanesi:
A Mathematical Model for the Enhanced Cytoplasmic Transport - How to Get (Faster) to the Nucleus. BIOINFORMATICS 2011: 39-46 - [c32]Angelo M. Facchiano
, Paola Festa, Anna Marabotti
, Luciano Milanesi
, Francesco Musacchia
:
Solving Biclustering with a GRASP-Like Metaheuristic: Two Case-Studies on Gene Expression Analysis. CIBB 2011: 253-267 - [c31]Ivan Merelli
, Dario Pescini
, Ettore Mosca
, Paolo Cazzaniga, Carlo Maj
, Giancarlo Mauri
, Luciano Milanesi
:
Grid Computing for Sensitivity Analysis of Stochastic Biological Models. PaCT 2011: 62-73 - [c30]Daniele D'Agostino
, Ivan Merelli
, René L. Warren, Alessandro Guffanti, Luciano Milanesi
, Andrea Clematis
:
Parallelization of the SSAKE Genomics Application. PDP 2011: 326-330 - [p2]Ettore Mosca
, Luciano Milanesi
:
Modeling Biochemical Pathways. Mathematical Approaches to Polymer Sequence Analysis and Related Problems 2011: 111-126 - [p1]Erika Salvi
, Alessandro Orro, Guia Guffanti, Sara Lupoli, Federica Torri, Cristina Barlassina
, Steven G. Potkin, Daniele Cusi, Fabio Macciardi
, Luciano Milanesi
:
Population Stratification Analysis in Genome-Wide Association Studies. Mathematical Approaches to Polymer Sequence Analysis and Related Problems 2011: 177-196 - 2010
- [j53]Federica Viti
, Ivan Merelli
, Mieke Timmermans, Michael den Bakker, Francesco Beltrame, Peter Riegman, Luciano Milanesi
:
Semi-automatic identification of punching areas for tissue microarray building: the tubular breast cancer pilot study. BMC Bioinform. 11: 566 (2010) - [j52]Ettore Mosca
, Roberta Alfieri
, Ivan Merelli
, Federica Viti
, Andrea Calabria
, Luciano Milanesi
:
A multilevel data integration resource for breast cancer study. BMC Syst. Biol. 4: 76 (2010) - [j51]Andrea Calabria
, Davide Di Pasquale, Matteo Gnocchi, Paolo Alessandro Cozzi, Alessandro Orro, Gabriele Antonio Trombetti, Luciano Milanesi
:
Grid Based Genome Wide Studies on Atrial Flutter. J. Grid Comput. 8(4): 511-527 (2010) - [j50]Ettore Mosca
, Cinzia Cocola
, Davood Sabour, Paride Pelucchi
, Giovanni Bertalot
, Orazio Palumbo
, Massimo Carella
, Martin Götte
, Hans R. Schöler
, Rolland A. Reinbold, Ileana Zucchi, Luciano Milanesi
:
Overlapping Genes May Control Reprogramming of Mouse Somatic Cells into Induced Pluripotent Stem Cells (iPSCs) and Breast Cancer Stem Cells. Silico Biol. 10(5-6): 207-221 (2010) - [j49]Andrea Calabria, Ettore Mosca
, Federica Viti
, Ivan Merelli, Luciano Milanesi:
SNPRanker: a tool for identification and scoring of SNPs associated to target genes. J. Integr. Bioinform. 7(3) (2010) - [j48]Ivan Merelli
, Alessandro Guffanti, Marco Fabbri
, Andrea Cocito, Laura Furia, Ursula Grazini, Raoul Jean Pierre Bonnal
, Luciano Milanesi
, Fraser McBlane:
RSSsite: a reference database and prediction tool for the identification of cryptic Recombination Signal Sequences in human and murine genomes. Nucleic Acids Res. 38(Web-Server-Issue): 262-267 (2010) - [c29]Ettore Mosca
, Paolo Cazzaniga, Dario Pescini
, Giancarlo Mauri, Luciano Milanesi
:
Modelling Spatial Heterogeneity and Macromolecular Crowding with Membrane Systems. Int. Conf. on Membrane Computing 2010: 285-304 - [c28]Daniele D'Agostino
, Andrea Clematis
, Ivan Merelli
, Paolo Cozzi, Luciano Milanesi
:
A Parallel Algorithm for Molecular Surface Matching Through Image Representation. PDP 2010: 387-394 - [c27]Antonella Galizia
, Federica Viti
, Andrea Clematis
, Luciano Milanesi
:
A Dynamic Parallel Approach to Recognize Tubular Breast Cancer for TMA Image Building. PDP 2010: 403-410 - [c26]Paolo Romano, Luciano Milanesi
:
Complex Search, Ranks, and Biological Discovery: A User's Perspective. SeCO Workshop 2010: 226-235
2000 – 2009
- 2009
- [j47]Luciano Milanesi, Paolo Romano, Gastone C. Castellani, Daniel Remondini, Pietro Liò:
Trends in modeling Biomedical Complex Systems. BMC Bioinform. 10(S-12): 0 (2009) - [j46]Ivan Merelli, Andrea Caprera, Alessandra Stella, Marcello Del Corvo, Luciano Milanesi, Barbara Lazzari:
The Human EST Ontology Explorer: a tissue-oriented visualization system for ontologies distribution in human EST collections. BMC Bioinform. 10(S-12): 2 (2009) - [j45]Federica Chiappori, Pasqualina D'Ursi, Ivan Merelli, Luciano Milanesi, Ermanna Rovida:
In silico saturation mutagenesis and docking screening for the analysis of protein-ligand interaction: the Endothelial Protein C Receptor case study. BMC Bioinform. 10(S-12): 3 (2009) - [j44]Ettore Mosca
, Gloria Bertoli
, Eleonora Piscitelli
, Laura Vilardo, Rolland A. Reinbold, Ileana Zucchi, Luciano Milanesi:
Identification of functionally related genes using data mining and data integration: a breast cancer case study. BMC Bioinform. 10(S-12): 8 (2009) - [j43]Roberta Alfieri, Matteo Barberis
, Ferdinando Chiaradonna, Daniela Gaglio, Luciano Milanesi, Marco Vanoni, Edda Klipp, Lilia Alberghina:
Towards a systems biology approach to mammalian cell cycle: modeling the entrance into S phase of quiescent fibroblasts after serum stimulation. BMC Bioinform. 10(S-12): 16 (2009) - [j42]Roberto Barbera
, Giacinto Donvito
, Alberto Falzone, Giuseppe La Rocca
, Luciano Milanesi
, Giorgio Pietro Maggi, Saverio Vicario
:
The GENIUS Grid Portal and robot certificates: a new tool for e-Science. BMC Bioinform. 10(S-6) (2009) - [c25]Roberto Barbera, Giacinto Donvito, Alberto Falzone, Giuseppe La Rocca, Giorgio Pietro Maggi, Saverio Vicario, Luciano Milanesi:
On the Performance of Large Scale Bayesian Phylogenetic Analyses with Grid Portals and Robot Certificates. IWPLS 2009 - [c24]Luciano Milanesi, Roberta Alfieri, Ettore Mosca, Federica Viti, Pasqualina D'Ursi, Ivan Merelli:
Sys-Bio Gateway: a Framework of Bioinformatics Database Resources Oriented to Systems Biology. IWPLS 2009 - [c23]Paolo Cazzaniga, Giancarlo Mauri
, Luciano Milanesi
, Ettore Mosca
, Dario Pescini
:
A Novel Variant of P Systems for the Modelling and Simulation of Biochemical Systems. Workshop on Membrane Computing 2009: 210-226 - [c22]Federica Viti
, Ettore Mosca
, Ivan Merelli
, Andrea Calabria
, Roberta Alfieri
, Luciano Milanesi
:
Ontological Enrichment of the Genes-to-Systems Breast Cancer Database. MTSR 2009: 171-182 - [c21]Daniele D'Agostino
, Andrea Clematis
, Ivan Merelli
, Paolo Cozzi, Luciano Milanesi
:
Parallel Decomposition of 3D Surfaces in Images of Local Descriptors for Molecular Screening. PDP 2009: 261-267 - 2008
- [j41]Barbara Lazzari, Andrea Caprera, Alberto Vecchietti, Ivan Merelli
, Francesca Barale, Luciano Milanesi
, Alessandra Stella, Carlo Pozzi:
Version VI of the ESTree db: an improved tool for peach transcriptome analysis. BMC Bioinform. 9(S-2) (2008) - [j40]Alessandro Orro, Guia Guffanti, Erika Salvi
, Fabio Macciardi
, Luciano Milanesi
:
SNPLims: a data management system for genome wide association studies. BMC Bioinform. 9(S-2) (2008) - [j39]Mirko Francesconi
, Daniel Remondini
, Nicola Neretti
, John M. Sedivy, Leon N. Cooper, Ettore Verondini, Luciano Milanesi
, Gastone C. Castellani:
Reconstructing networks of pathways via significance analysis of their intersections. BMC Bioinform. 9(S-4) (2008) - [j38]Federica Viti
, Ivan Merelli
, Andrea Caprera, Barbara Lazzari, Alessandra Stella, Luciano Milanesi
:
Ontology-based, Tissue MicroArray oriented, image centered tissue bank. BMC Bioinform. 9(S-4) (2008) - [j37]Ivan Merelli
, Alessandro Orro, Daniele D'Agostino
, Andrea Clematis
, Luciano Milanesi
:
A parallel protein surface reconstruction system. Int. J. Bioinform. Res. Appl. 4(3): 221-239 (2008) - [j36]Chanchal K. Mitra, Luciano Milanesi:
An Unusal Distribution of 6-nt Sequences Near The Transcription Start Site. J. Integr. Bioinform. 5(2) (2008) - [j35]Roberta Alfieri
, Ivan Merelli
, Ettore Mosca
, Luciano Milanesi
:
The cell cycle DB: a systems biology approach to cell cycle analysis. Nucleic Acids Res. 36(Database-Issue): 641-645 (2008) - [c20]Ivan Merelli
, Paolo Cozzi, Daniele D'Agostino
, Andrea Clematis, Luciano Milanesi
:
Images Based System for Surface Matching in Macromolecular Screening. BIBM 2008: 397-401 - [c19]Richard Carl Van der Wath, Elizabeth van der Wath, Antonio Carapelli, Francesco Nardi, Francesco Frati, Luciano Milanesi, Pietro Liò:
Bayesian Phylogeny on Grid. BIRD 2008: 404-416 - [c18]Antonella Galizia
, Federica Viti
, Alessandro Orro, Daniele D'Agostino
, Ivan Merelli
, Luciano Milanesi
, Andrea Clematis
:
TMAinspect, an EGEE Framework for Tissue MicroArray Image Handling. CCGRID 2008: 741-746 - [c17]Paolo Cozzi, Ivan Merelli
, Luciano Milanesi
:
A Visualization ToolKit Based Application for Representing Macromolecular Surfaces. CIBB 2008: 284-292 - [c16]Antonella Galizia
, Daniele D'Agostino
, Andrea Clematis
, Federica Viti
, Alessandro Orro, Ivan Merelli
, Luciano Milanesi
:
Enabling Parallel TMA Image Analysis in a Grid Environment. CISIS 2008: 394-399 - [c15]Daniele D'Agostino
, Andrea Clematis
, Ivan Merelli
, Luciano Milanesi
, Matteo Coloberti:
A Grid Service based Parallel Molecular Surface Reconstruction System. PDP 2008: 455-462 - 2007
- [j34]Emanuela Merelli
, Giuliano Armano, Nicola Cannata, Flavio Corradini, Mark d'Inverno, Andreas Doms, Phillip W. Lord
, Andrew C. R. Martin
, Luciano Milanesi
, Steffen Möller
, Michael Schroeder, Michael Luck
:
Agents in bioinformatics, computational and systems biology. Briefings Bioinform. 8(1): 45-59 (2007) - [j33]Pasqualina D'Ursi, Francesca Marino, Andrea Caprera, Luciano Milanesi
, Elena M. Faioni, Ermanna Rovida:
ProCMD: a database and 3D web resource for protein C mutants. BMC Bioinform. 8(S-1) (2007) - [j32]Barbara Lazzari, Andrea Caprera, Cristian Cosentino
, Alessandra Stella, Luciano Milanesi
, Angelo Viotti:
ESTuber db: an online database for Tuber borchii EST sequences. BMC Bioinform. 8(S-1) (2007) - [j31]Dietrich Rebholz-Schuhmann, Graham Cameron, Dominic Clark
, Erik M. van Mulligen
, Jean-Louis Coatrieux, Eva del Hoyo-Barbolla, Fernando Martín-Sánchez
, Luciano Milanesi
, Ivan Porro, Francesco Beltrame, Ioannis G. Tollis, Johan van der Lei:
SYMBIOmatics: Synergies in Medical Informatics and Bioinformatics - exploring current scientific literature for emerging topics. BMC Bioinform. 8(S-1) (2007) - [j30]Paolo Romano
, Ezio Bartocci
, Guglielmo Bertolini, Flavio De Paoli
, Domenico Marra, Giancarlo Mauri
, Emanuela Merelli
, Luciano Milanesi
:
Biowep: a workflow enactment portal for bioinformatics applications. BMC Bioinform. 8(S-1) (2007) - [j29]Gabriele Antonio Trombetti, Raoul Jean Pierre Bonnal
, Ermanno Rizzi
, Gianluca De Bellis
, Luciano Milanesi
:
Data handling strategies for high throughput pyrosequencers. BMC Bioinform. 8(S-1) (2007) - [j28]Roberta Alfieri
, Ivan Merelli
, Ettore Mosca
, Luciano Milanesi
:
A data integration approach for cell cycle analysis oriented to model simulation in systems biology. BMC Syst. Biol. 1: 35 (2007) - [j27]Daniel Remondini
, Nicola Neretti
, Claudio Franceschi, Paolo Tieri
, John M. Sedivy, Luciano Milanesi
, Gastone C. Castellani:
Networks from Gene Expression Time Series: Characterization of Correlation Patterns. Int. J. Bifurc. Chaos 17(7): 2477-2483 (2007) - [j26]Fedor A. Kolpakov
, Vladimir Poroikov
, Ruslan N. Sharipov, Yury V. Kondrakhin, Alexey V. Zakharov, Alexey Lagunin
, Luciano Milanesi
, Alexander E. Kel:
CYCLONET - an integrated database on cell cycle regulation and carcinogenesis. Nucleic Acids Res. 35(Database-Issue): 550-556 (2007) - [j25]Jean-Yves Bansard, Dietrich Rebholz-Schuhmann, Graham Cameron, Dominic Clark
, Erik M. van Mulligen
, Francesco Beltrame, Eva del Hoyo-Barbolla, Fernando Martín-Sánchez
, Luciano Milanesi
, Ioannis G. Tollis, Johan van der Lei, Jean-Louis Coatrieux:
Medical Informatics and Bioinformatics: A Bibliometric Study. IEEE Trans. Inf. Technol. Biomed. 11(3): 237-243 (2007) - [c14]Gabriele Antonio Trombetti, Ivan Merelli, Alessandro Orro, Luciano Milanesi:
BGBlast: A BLAST Grid Implementation with Database Self-Updating and Adaptive Replication. HealthGrid 2007: 23-30 - [c13]Roberta Alfieri, Ettore Mosca, Ivan Merelli, Luciano Milanesi:
Parameter Estimation for Cell Cycle Ordinary Differential Equation (ODE) Models using a Grid Approach. HealthGrid 2007: 93-102 - [c12]Federica Viti, Ivan Merelli, Antonella Galizia, Daniele D'Agostino, Andrea Clematis, Luciano Milanesi:
Tissue MicroArray: a Distributed Grid Approach for Image Analysis. HealthGrid 2007: 291-298 - [c11]Alessandro Orro, Luciano Milanesi:
An Agent Approach for Protein Function Analysis in a Grid Infrastructure. HealthGrid 2007: 314-321 - [c10]Antonella Galizia, Federica Viti, Daniele D'Agostino, Ivan Merelli, Luciano Milanesi, Andrea Clematis:
Experimenting Grid Protocols to Improve Privacy Preservation in Efficient Distributed Image Processing. PARCO 2007: 139-146 - [c9]