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2020 – today
- 2022
[j9]Karen E. Batch, Jianwei Yue, Alex Darcovich, Kaelan Lupton, Corinne C. Liu, David P. Woodlock, Mohammad Ali K. El Amine, Pamela I. Causa-Andrieu, Lior Gazit, Gary H. Nguyen, Farhana H. Zulkernine, Richard K. G. Do, Amber L. Simpson:
Developing a Cancer Digital Twin: Supervised Metastases Detection From Consecutive Structured Radiology Reports. Frontiers Artif. Intell. 5: 826402 (2022)- [c36]Ramtin Mojtahedi
, Mohammad Hamghalam, Richard K. G. Do, Amber L. Simpson:
Towards Optimal Patch Size in Vision Transformers for Tumor Segmentation. MMMI@MICCAI 2022: 110-120 - 2021
- [c35]Mohammad Hamghalam, Alejandro F. Frangi, Baiying Lei, Amber L. Simpson:
Modality Completion via Gaussian Process Prior Variational Autoencoders for Multi-modal Glioma Segmentation. MICCAI (7) 2021: 442-452 - [c34]Hassan Muhammad, Chensu Xie, Carlie S. Sigel, Michael Doukas, Lindsay Alpert, Amber Lea Simpson, Thomas J. Fuchs:
EPIC-Survival: End-to-end Part Inferred Clustering for Survival Analysis, with Prognostic Stratification Boosting. MIDL 2021: 520-531 - [i4]Michela Antonelli, Annika Reinke, Spyridon Bakas, Keyvan Farahani, Annette Kopp-Schneider, Bennett A. Landman, Geert Litjens, Bjoern H. Menze, Olaf Ronneberger, Ronald M. Summers, Bram van Ginneken, Michel Bilello, Patrick Bilic, Patrick Ferdinand Christ, Richard K. G. Do, Marc Gollub, Stephan Heckers, Henkjan J. Huisman, William R. Jarnagin, Maureen McHugo, Sandy Napel, Jennifer Goli-Pernicka, Kawal S. Rhode, Catalina Tobon-Gomez, Eugene Vorontsov, James A. Meakin, Sébastien Ourselin, Manuel Wiesenfarth, Pablo Arbelaez, Byeonguk Bae, Sihong Chen, Laura Alexandra Daza, Jianjiang Feng, Baochun He, Fabian Isensee, Yuanfeng Ji, Fucang Jia, Namkug Kim, Ildoo Kim, Dorit Merhof, Akshay Pai, BeomHee Park, Mathias Perslev, Ramin Rezaiifar, Oliver Rippel, Ignacio Sarasua, Wei Shen, Jaemin Son, Christian Wachinger, Liansheng Wang, Yan Wang, Yingda Xia, Daguang Xu, Zhanwei Xu, Yefeng Zheng, Amber L. Simpson, Lena Maier-Hein, M. Jorge Cardoso:
The Medical Segmentation Decathlon. CoRR abs/2106.05735 (2021) - [i3]Mohammad Hamghalam, Alejandro F. Frangi, Baiying Lei, Amber L. Simpson:
Modality Completion via Gaussian Process Prior Variational Autoencoders for Multi-Modal Glioma Segmentation. CoRR abs/2107.03442 (2021) - 2020
- [c33]Travis L. Williams, Kate A. Harrington, Sharon A. Lawrence, Jayasree Chakraborty, Mohammad A. Al Efishat, Marc A. Attiyeh, Gokce Askan, Yuting Chou, Alessandra Pulvirenti, Caitlin A. McIntyre, Mithat Gonen, Olca Basturk, Vinod P. Balachandran, T. Peter Kingham, Michael I. D'Angelica, William R. Jarnagin, Jeffrey A. Drebin, Richard K. G. Do, Peter J. Allen, Amber L. Simpson:
A combined radiomics and cyst fluid inflammatory markers model to predict preoperative risk in pancreatic cystic lesions. Medical Imaging: Image-Guided Procedures 2020: 113151Q
2010 – 2019
- 2019
- [c32]Hassan Muhammad, Carlie S. Sigel, Gabriele Campanella, Thomas Börner, Linda M. Pak, Stefan Büttner, Jan N. M. IJzermans, Bas Groot Koerkamp, Michael Doukas, William R. Jarnagin, Amber L. Simpson, Thomas J. Fuchs:
Unsupervised Subtyping of Cholangiocarcinoma Using a Deep Clustering Convolutional Autoencoder. MICCAI (1) 2019: 604-612 - [i2]Amber L. Simpson, Michela Antonelli, Spyridon Bakas, Michel Bilello, Keyvan Farahani, Bram van Ginneken, Annette Kopp-Schneider, Bennett A. Landman, Geert Litjens, Bjoern H. Menze, Olaf Ronneberger, Ronald M. Summers, Patrick Bilic, Patrick Ferdinand Christ, Richard K. G. Do, Marc Gollub, Jennifer Golia-Pernicka, Stephan Heckers, William R. Jarnagin, Maureen McHugo, Sandy Napel, Eugene Vorontsov, Lena Maier-Hein, M. Jorge Cardoso:
A large annotated medical image dataset for the development and evaluation of segmentation algorithms. CoRR abs/1902.09063 (2019) - [i1]Hassan Muhammad, Carlie S. Sigel, Gabriele Campanella, Thomas Börner, Linda M. Pak, Stefan Büttner, Jan N. M. IJzermans, Bas Groot Koerkamp, Michael Doukas, William R. Jarnagin, Amber L. Simpson, Thomas J. Fuchs:
Towards Unsupervised Cancer Subtyping: Predicting Prognosis Using A Histologic Visual Dictionary. CoRR abs/1903.05257 (2019) - 2018
- [c31]Jayasree Chakraborty, Alessandra Pulvirenti, Rikiya Yamashita, Abhishek Midya, Mithat Gönen, David S. Klimstra, Diane L. Reidy, Peter J. Allen, Richard K. G. Do, Amber L. Simpson:
Quantitative CT analysis for the preoperative prediction of pathologic grade in pancreatic neuroendocrine tumors. Medical Imaging: Computer-Aided Diagnosis 2018: 105751N - [c30]Abhishek Midya, Jayasree Chakraborty, Linda M. Pak, Jian Zheng, William R. Jarnagin, Richard K. G. Do, Amber L. Simpson:
Deep convolutional neural network for the classification of hepatocellular carcinoma and intrahepatic cholangiocarcinoma. Medical Imaging: Computer-Aided Diagnosis 2018: 1057528 - [c29]Jon S. Heiselman, Jarrod A. Collins, Logan W. Clements, Jared A. Weis, Amber L. Simpson, Sunil K. Geevarghese, T. Peter Kingham, William R. Jarnagin, Michael I. Miga:
Technical note: Nonrigid registration for laparoscopic liver surgery using sparse intraoperative data. Medical Imaging: Image-Guided Procedures 2018: 105760D - [e1]Danail Stoyanov, Zeike Taylor, Stephen R. Aylward, João Manuel R. S. Tavares, Yiming Xiao, Amber L. Simpson, Anne L. Martel, Lena Maier-Hein, Shuo Li, Hassan Rivaz, Ingerid Reinertsen, Matthieu Chabanas, Keyvan Farahani:
Simulation, Image Processing, and Ultrasound Systems for Assisted Diagnosis and Navigation - International Workshops, POCUS 2018, BIVPCS 2018, CuRIOUS 2018, and CPM 2018, Held in Conjunction with MICCAI 2018, Granada, Spain, September 16-20, 2018, Proceedings. Lecture Notes in Computer Science 11042, Springer 2018, ISBN 978-3-030-01044-7 [contents] - 2017
- [j8]Jarrod A. Collins, Jared A. Weis, Jon S. Heiselman, Logan W. Clements, Amber L. Simpson, William R. Jarnagin, Michael I. Miga:
Improving Registration Robustness for Image-Guided Liver Surgery in a Novel Human-to-Phantom Data Framework. IEEE Trans. Medical Imaging 36(7): 1502-1510 (2017) - [c28]Lior Gazit, Jayasree Chakraborty, Marc A. Attiyeh, Liana Langdon-Embry, Peter J. Allen, Richard K. G. Do, Amber L. Simpson:
Quantification of CT images for the classification of high- and low-risk pancreatic cysts. Medical Imaging: Computer-Aided Diagnosis 2017: 101340X - [c27]Jayasree Chakraborty, Jian Zheng, Mithat Gönen, William R. Jarnagin, Ronald P. DeMatteo, Richard K. G. Do, Amber L. Simpson:
Preoperative assessment of microvascular invasion in hepatocellular carcinoma. Medical Imaging: Computer-Aided Diagnosis 2017: 1013410 - [c26]William R. Jarnagin, Amber L. Simpson, Michael I. Miga:
Toward integrated image guided liver surgery. Medical Imaging: Image-Guided Procedures 2017: 101350R - [c25]Jarrod A. Collins, Jon S. Heiselman, Jared A. Weis, Logan W. Clements, Amber L. Simpson, William R. Jarnagin, Michael I. Miga:
On the nature of data collection for soft-tissue image-to-physical organ registration: a noise characterization study. Medical Imaging: Image-Guided Procedures 2017: 101351Y - [c24]Burton Ma, Niloofar Banihaveb, Joy Choi, Elvis C. S. Chen, Amber L. Simpson:
Is pose-based pivot calibration superior to sphere fitting? Medical Imaging: Image-Guided Procedures 2017: 101351U - [c23]Burton Ma, T. Peter Kingham, Michael I. Miga, William R. Jarnagin, Amber L. Simpson:
Liver segmentation in color images. Medical Imaging: Image-Guided Procedures 2017: 101351O - [c22]Jon S. Heiselman, Jarrod A. Collins, Logan W. Clements, Jared A. Weis, Amber L. Simpson, Sunil K. Geevarghese, William R. Jarnagin, Michael I. Miga:
Emulation of the laparoscopic environment for image-guided liver surgery via an abdominal phantom system with anatomical ligamenture. Medical Imaging: Image-Guided Procedures 2017: 101352W - 2016
- [j7]Michael I. Miga, Kay Sun, Ishita Chen, Logan W. Clements, Thomas S. Pheiffer, Amber L. Simpson, Reid Carleton Thompson:
Clinical evaluation of a model-updated image-guidance approach to brain shift compensation: experience in 16 cases. Int. J. Comput. Assist. Radiol. Surg. 11(8): 1467-1474 (2016) - [j6]Rowena E. Ong, Courtenay L. Glisson, Jessica Burgner-Kahrs, Amber L. Simpson, Andrei Danilchenko, Ray A. Lathrop, S. Duke Herrell, Robert J. Webster III, Michael I. Miga, Robert L. Galloway:
A novel method for texture-mapping conoscopic surfaces for minimally invasive image-guided kidney surgery. Int. J. Comput. Assist. Radiol. Surg. 11(8): 1515-1526 (2016) - [c21]Jayasree Chakraborty, Liana Langdon-Embry, Joanna G. Escalon, Peter J. Allen, Maeve A. Lowery, Eileen M. O'Reilly, Richard K. G. Do, Amber L. Simpson:
Texture analysis for survival prediction of pancreatic ductal adenocarcinoma patients with neoadjuvant chemotherapy. Medical Imaging: Image Processing 2016: 97841W - 2015
- [c20]Logan W. Clements, Jarrod A. Collins, Yifei Wu, Amber L. Simpson, William R. Jarnagin, Michael I. Miga:
Validation of model-based deformation correction in image-guided liver surgery via tracked intraoperative ultrasound: preliminary method and results. Medical Imaging: Image-Guided Procedures 2015: 94150T - [c19]Universe Leung, Amber L. Simpson, Lauryn B. Adams, William R. Jarnagin, Michael I. Miga, T. Peter Kingham:
Image guidance improves localization of sonographically occult colorectal liver metastases. Medical Imaging: Image-Guided Procedures 2015: 94151L - 2014
- [j5]Amber L. Simpson, Kay Sun, Thomas S. Pheiffer, D. Caleb Rucker, Allen K. Sills, Reid Carleton Thompson, Michael I. Miga:
Evaluation of Conoscopic Holography for Estimating Tumor Resection Cavities in Model-Based Image-Guided Neurosurgery. IEEE Trans. Biomed. Eng. 61(6): 1833-1843 (2014) - [j4]D. Caleb Rucker, Yifei Wu, Logan W. Clements, Janet E. Ondrake, Thomas S. Pheiffer, Amber L. Simpson, William R. Jarnagin, Michael I. Miga:
A Mechanics-Based Nonrigid Registration Method for Liver Surgery Using Sparse Intraoperative Data. IEEE Trans. Medical Imaging 33(1): 147-158 (2014) - [c18]Yifei Wu, D. Caleb Rucker, Rebekah H. Conley, Thomas S. Pheiffer, Amber L. Simpson, Sunil K. Geevarghese, Michael I. Miga:
Registration of liver images to minimally invasive intraoperative surface and subsurface data. Medical Imaging: Image-Guided Procedures 2014: 90360V - [c17]Amber L. Simpson, Richard K. G. Do, E. Patricia Parada, Michael I. Miga, William R. Jarnagin:
Texture feature analysis for prediction of postoperative liver failure prior to surgery. Medical Imaging: Image Processing 2014: 903414 - 2013
- [j3]Amber L. Simpson, Jessica Burgner, Courtenay L. Glisson, S. Duke Herrell, Burton Ma, Thomas S. Pheiffer, Robert J. Webster III, Michael I. Miga:
Comparison Study of Intraoperative Surface Acquisition Methods for Surgical Navigation. IEEE Trans. Biomed. Eng. 60(4): 1090-1099 (2013) - [j2]Ishita Chen, Rowena E. Ong, Amber L. Simpson, Kay Sun, Reid Carleton Thompson, Michael I. Miga:
Integrating Retraction Modeling Into an Atlas-Based Framework for Brain Shift Prediction. IEEE Trans. Biomed. Eng. 60(12): 3494-3504 (2013) - [c16]Ishita Chen, Amber L. Simpson, Kay Sun, Reid Carleton Thompson, Michael I. Miga:
Sensitivity analysis and automation for intraoperative implementation of the atlas-based method for brain shift correction. Medical Imaging: Image-Guided Procedures 2013: 86710T - [c15]D. Caleb Rucker, Yifei Wu, Janet E. Ondrake, Thomas S. Pheiffer, Amber L. Simpson, Michael I. Miga:
Nonrigid liver registration for image-guided surgery using partial surface data: a novel iterative approach. Medical Imaging: Image-Guided Procedures 2013: 86710B - [c14]Thomas S. Pheiffer, Amber L. Simpson, Janet E. Ondrake, Michael I. Miga:
Geometric reconstruction using tracked ultrasound strain imaging. Medical Imaging: Image-Guided Procedures 2013: 86711E - [c13]Amber L. Simpson, Neal P. Dillon, Michael I. Miga, Burton Ma:
A framework for measuring TRE at the tip of an optically tracked pointing stylus. Medical Imaging: Image-Guided Procedures 2013: 867114 - [c12]Ankur N. Kumar, Thomas S. Pheiffer, Amber L. Simpson, Reid Carleton Thompson, Michael I. Miga, Benoit M. Dawant:
Phantom-based comparison of the accuracy of point clouds extracted from stereo cameras and laser range scanner. Medical Imaging: Image-Guided Procedures 2013: 867125 - 2012
- [c11]Philip J. Swaney, Jessica Burgner, Thomas S. Pheiffer, D. Caleb Rucker, Hunter B. Gilbert, Janet E. Ondrake, Amber L. Simpson, Everette Clif Burdette, Michael I. Miga, Robert J. Webster III:
Tracked 3D ultrasound targeting with an active cannula. Medical Imaging: Image-Guided Procedures 2012: 83160R - [c10]Kristen E. Miller, Janet E. Ondrake, Thomas S. Pheiffer, Amber L. Simpson, Michael I. Miga:
Utilizing ultrasound as a surface digitization tool in image guided liver surgery. Medical Imaging: Image-Guided Procedures 2012: 83163D - [c9]Michael J. Shannon, Ingrid M. Meszoely, Janet E. Ondrake, Thomas S. Pheiffer, Amber L. Simpson, Kay Sun, Michael I. Miga:
Initial study of breast tissue retraction toward image guided breast surgery. Medical Imaging: Image-Guided Procedures 2012: 831621 - [c8]Amber L. Simpson, Jessica Burgner, Ishita Chen, Thomas S. Pheiffer, Kay Sun, Reid Carleton Thompson, Robert J. Webster III, Michael I. Miga:
Intraoperative brain tumor resection cavity characterization with conoscopic holography. Medical Imaging: Image-Guided Procedures 2012: 831631 - 2011
- [j1]Siyi Ding, Michael I. Miga, Thomas S. Pheiffer, Amber L. Simpson, Reid Carleton Thompson, Benoit M. Dawant:
Tracking of Vessels in Intra-Operative Microscope Video Sequences for Cortical Displacement Estimation. IEEE Trans. Biomed. Eng. 58(7): 1985-1993 (2011) - [c7]Michael I. Miga, Prashanth Dumpuri, Amber L. Simpson, Jared A. Weis, William R. Jarnagin:
The sparse data extrapolation problem: strategies for soft-tissue correction for image-guided liver surgery. Medical Imaging: Image-Guided Procedures 2011: 79640C - [c6]Amber L. Simpson, Burton Ma, Randy E. Ellis, A. James Stewart, Michael I. Miga:
Uncertainty propagation and analysis of image-guided surgery. Medical Imaging: Image-Guided Procedures 2011: 79640H - [c5]Courtenay L. Glisson, Rowena E. Ong, Amber L. Simpson, Peter Clark, S. Duke Herrell, Robert L. Galloway:
The use of virtual fiducials in image-guided kidney surgery. Medical Imaging: Image-Guided Procedures 2011: 796402 - [c4]Thomas S. Pheiffer, Brian Lennon, Amber L. Simpson, Michael I. Miga:
Development of a novel laser range scanner. Medical Imaging: Image-Guided Procedures 2011: 796424 - 2010
- [b1]Amber L. Simpson:
The Computation and Visualization of Uncertainty in Surgical Navigation. Queen's University at Kingston, Ontario, Canada, 2010
2000 – 2009
- 2007
- [c3]Burton Ma, Amber L. Simpson, Randy E. Ellis:
Proof of Concept of a Simple Computer-Assisted Technique for Correcting Bone Deformities. MICCAI (2) 2007: 935-942 - 2006
- [c2]Amber L. Simpson, Burton Ma, Elvis C. S. Chen, Randy E. Ellis, A. James Stewart:
Using Registration Uncertainty Visualization in a User Study of a Simple Surgical Task. MICCAI (2) 2006: 397-404 - 2005
- [c1]Amber L. Simpson, Burton Ma, Dan P. Borschneck, Randy E. Ellis:
Computer-Assisted Deformity Correction Using the Ilizarov Method. MICCAI 2005: 459-466
Coauthor Index
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