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ORCIDLaura Inés Furlong
Laura I. Furlong
Person information
- affiliation: Pompeu Fabra University, Research Programme on Biomedical Informatics, Barcelona, Spain
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Journal Articles
- 2023
[j28]Piotr Gawron, David Hoksza, Janet Piñero, María Peña-Chilet, Marina Esteban-Medina, Jose Luis Fernandez-Rueda, Vincenza Colonna, Ewa Smula, Laurent Heirendt, François Ancien, Valentin Grouès, Venkata P. Satagopam, Reinhard Schneider, Joaquín Dopazo, Laura I. Furlong, Marek Ostaszewski:
Visualization of automatically combined disease maps and pathway diagrams for rare diseases. Frontiers Bioinform. 3 (2023)- 2021
- [j27]Alexia Giannoula, Emilio Centeno, Miguel Angel Mayer
, Ferran Sanz, Laura I. Furlong:
A system-level analysis of patient disease trajectories based on clinical, phenotypic and molecular similarities. Bioinform. 37(10): 1435-1443 (2021) - 2020
- [j26]Janet Piñero González, Juan Manuel Ramírez-Anguita, Josep Saüch-Pitarch, Francesco Ronzano, Emilio Centeno, Ferran Sanz, Laura I. Furlong:
The DisGeNET knowledge platform for disease genomics: 2019 update. Nucleic Acids Res. 48(Database-Issue): D845-D855 (2020) - 2019
- [j25]Judith Pérez-Granado, Janet Piñero González, Laura Inés Furlong:
ResMarkerDB: a database of biomarkers of response to antibody therapy in breast and colorectal cancer. Database J. Biol. Databases Curation 2019: baz060 (2019) - [j24]Francesco Ronzano, Alba Gutiérrez-Sacristán, Laura I. Furlong:
Comorbidity4j: a tool for interactive analysis of disease comorbidities over large patient datasets. Bioinform. 35(18): 3530-3532 (2019) - 2018
- [j23]Alba Gutiérrez-Sacristán, Romain Guedj, Gabor Korodi, Jason Stedman, Laura Inés Furlong, Chirag J. Patel, Isaac S. Kohane, Paul Avillach:
Rcupcake: an R package for querying and analyzing biomedical data through the BD2K PIC-SURE RESTful API. Bioinform. 34(8): 1431-1432 (2018) - [j22]Alba Gutiérrez-Sacristán, Àlex Bravo, Alexia Giannoula, Miguel Angel Mayer, Ferran Sanz, Laura Inés Furlong:
comoRbidity: an R package for the systematic analysis of disease comorbidities. Bioinform. 34(18): 3228-3230 (2018) - 2017
- [j21]Alba Gutiérrez-Sacristán, Àlex Bravo, Marta Portero-Tresserra, Olga Valverde, Antonio Armario, M. C. Blanco-Gandía, Adriana Farré, Lierni Fernández-Ibarrondo, Francina Fonseca, Jesús Giraldo, Angela Leis, Anna Mané, Miguel Angel Mayer, Sandra Montagud-Romero, Roser Nadal, Jordi Ortiz, Francisco Javier Pavon, Ezequiel Perez, Marta Rodríguez-Arias, Antonia Serrano, Marta Torrens, Vincent Warnault, Ferran Sanz, Laura I. Furlong:
Text mining and expert curation to develop a database on psychiatric diseases and their genes. Database J. Biol. Databases Curation 2017: bax043 (2017) - [j20]Alba Gutiérrez-Sacristán, Carles Hernandez-Ferrer, Juan R. González, Laura Inés Furlong:
psygenet2r: a R/Bioconductor package for the analysis of psychiatric disease genes. Bioinform. 33(24): 4004-4006 (2017) - [j19]Janet Piñero González, Àlex Bravo, Núria Queralt-Rosinach, Alba Gutiérrez-Sacristán, Jordi Deu-Pons, Emilio Centeno, Javier García-García, Ferran Sanz, Laura I. Furlong:
DisGeNET: a comprehensive platform integrating information on human disease-associated genes and variants. Nucleic Acids Res. 45(Database-Issue): D833-D839 (2017) - 2016
- [j18]Àlex Bravo, Tong Shu Li, Andrew I. Su, Benjamin M. Good, Laura I. Furlong:
Combining machine learning, crowdsourcing and expert knowledge to detect chemical-induced diseases in text. Database J. Biol. Databases Curation 2016 (2016) - [j17]Tong Shu Li, Àlex Bravo, Laura I. Furlong, Benjamin M. Good, Andrew I. Su:
A crowdsourcing workflow for extracting chemical-induced disease relations from free text. Database J. Biol. Databases Curation 2016 (2016) - [j16]Núria Queralt-Rosinach, Janet Piñero González, Àlex Bravo, Ferran Sanz, Laura I. Furlong:
DisGeNET-RDF: harnessing the innovative power of the Semantic Web to explore the genetic basis of diseases. Bioinform. 32(14): 2236-2238 (2016) - [j15]María Florencia Abascal, María José Besso, Marina Rosso, María Victoria Mencucci, Evangelina Aparicio, Gala Szapiro, Laura Inés Furlong, Mónica Hebe Vazquez-Levin:
CDH1/E-cadherin and solid tumors. An updated gene-disease association analysis using bioinformatics tools. Comput. Biol. Chem. 60: 9-20 (2016) - [j14]Núria Queralt-Rosinach, Tobias Kuhn, Christine Chichester, Michel Dumontier, Ferran Sanz, Laura I. Furlong:
Publishing DisGeNET as nanopublications. Semantic Web 7(5): 519-528 (2016) - 2015
- [j13]Janet Piñero González, Núria Queralt-Rosinach, Àlex Bravo, Jordi Deu-Pons, Anna Bauer-Mehren, Martin Baron, Ferran Sanz, Laura Inés Furlong:
DisGeNET: a discovery platform for the dynamical exploration of human diseases and their genes. Database J. Biol. Databases Curation 2015 (2015) - [j12]Alba Gutiérrez-Sacristán, Solène Grosdidier, Olga Valverde, Marta Torrens, Àlex Bravo, Janet Piñero González, Ferran Sanz, Laura Inés Furlong:
PsyGeNET: a knowledge platform on psychiatric disorders and their genes. Bioinform. 31(18): 3075-3077 (2015) - [j11]Àlex Bravo, Janet Piñero González, Núria Queralt-Rosinach, Michael Rautschka, Laura Inés Furlong:
Extraction of relations between genes and diseases from text and large-scale data analysis: implications for translational research. BMC Bioinform. 16: 55:1-55:17 (2015) - 2014
- [j10]Michel Dumontier, Christopher J. O. Baker, Joachim Baran, Alison Callahan, Leonid L. Chepelev, Jose Cruz-Toledo, Nicholas R. Del Rio, Geraint Duck, Laura Inés Furlong, Nichealla Keath, Dana Klassen, Jamie P. McCusker, Núria Queralt-Rosinach, Matthias Samwald, Natalia Villanueva-Rosales, Mark D. Wilkinson, Robert Hoehndorf:
The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery. J. Biomed. Semant. 5: 14 (2014) - 2012
- [j9]Erik M. van Mulligen, Annie Fourrier-Réglat, David Gurwitz, Mariam Molokhia, Ainhoa Nieto, Gianluca Trifirò, Jan A. Kors, Laura Inés Furlong:
The EU-ADR corpus: Annotated drugs, diseases, targets, and their relationships. J. Biomed. Informatics 45(5): 879-884 (2012) - [j8]Anna Bauer-Mehren, Erik M. van Mulligen, Paul Avillach, María del Carmen Carrascosa, Ricard García-Serna, Janet Piñero González, Bharat Singh, Pedro Lopes, José Luís Oliveira, Gayo Diallo, Ernst Ahlberg Helgee, Scott Boyer, Jordi Mestres, Ferran Sanz, Jan A. Kors, Laura Inés Furlong:
Automatic Filtering and Substantiation of Drug Safety Signals. PLoS Comput. Biol. 8(4) (2012) - 2011
- [j7]Dietrich Rebholz-Schuhmann, Antonio Jimeno-Yepes, Chen Li, Senay Kafkas, Ian Lewin, Ning Kang, Peter T. Corbett, David Milward, Ekaterina Buyko, Elena Beisswanger, Kerstin Hornbostel, Alexandre Kouznetsov, René Witte, Jonas B. Laurila, Christopher J. O. Baker, Cheng-Ju Kuo, Simon Clematide, Fabio Rinaldi, Richárd Farkas, György Móra, Kazuo Hara, Laura Inés Furlong, Michael Rautschka, Mariana L. Neves, Alberto D. Pascual-Montano, Qi Wei, Nigel Collier, Md. Faisal Mahbub Chowdhury, Alberto Lavelli, Rafael Berlanga Llavori, Roser Morante, Vincent Van Asch, Walter Daelemans, José Luís Marina, Erik M. van Mulligen, Jan A. Kors, Udo Hahn:
Assessment of NER solutions against the first and second CALBC Silver Standard Corpus. J. Biomed. Semant. 2(S-5): S11 (2011) - [j6]Philippe E. Thomas, Roman Klinger, Laura Inés Furlong, Martin Hofmann-Apitius, Christoph M. Friedrich:
Challenges in the association of human single nucleotide polymorphism mentions with unique database identifiers. BMC Bioinform. 12(S-4): S4 (2011) - 2010
- [j5]Anna Bauer-Mehren, Michael Rautschka, Ferran Sanz, Laura Inés Furlong:
DisGeNET: a Cytoscape plugin to visualize, integrate, search and analyze gene-disease networks. Bioinform. 26(22): 2924-2926 (2010) - 2009
- [j4]Anna Bauer-Mehren, Laura Inés Furlong, Michael Rautschka, Ferran Sanz:
From SNPs to pathways: integration of functional effect of sequence variations on models of cell signalling pathways. BMC Bioinform. 10(S-8): 6 (2009) - 2008
- [j3]Laura Inés Furlong, Holger Dach, Martin Hofmann-Apitius, Ferran Sanz:
OSIRISv1.2: A named entity recognition system for sequence variants of genes in biomedical literature. BMC Bioinform. 9 (2008) - 2007
- [j2]Roman Klinger, Christoph M. Friedrich, Heinz-Theodor Mevissen, Juliane Fluck, Martin Hofmann-Apitius, Laura Inés Furlong, Ferran Sanz:
Identifying gene-Specific Variations in Biomedical Text. J. Bioinform. Comput. Biol. 5(6): 1277-1296 (2007) - 2006
- [j1]Julio Bonis, Laura Inés Furlong, Ferran Sanz:
OSIRIS: a tool for retrieving literature about sequence variants. Bioinform. 22(20): 2567-2569 (2006)
Conference and Workshop Papers
- 2020
- [c14]Angela Leis, Miguel Angel Mayer, Francesco Ronzano, Marta Torrens, Claudio Castillo, Laura I. Furlong, Ferran Sanz:
Clinical-Based and Expert Selection of Terms Related to Depression for Twitter Streaming and Language Analysis. MIE 2020: 921-925 - 2019
- [c13]Lluís Domínguez-Mas, Francesco Ronzano, Laura I. Furlong:
Supervised Learning Approaches to Detect Negation Cues in Spanish Reviews. IberLEF@SEPLN 2019: 361-368 - 2018
- [c12]Tobias Kuhn, Albert Meroño-Peñuela, Alexander Malic, Jorrit H. Poelen, Allen H. Hurlbert, Emilio Centeno Ortiz, Laura I. Furlong, Núria Queralt-Rosinach, Christine Chichester, Juan M. Banda, Egon L. Willighagen, Friederike Ehrhart, Chris T. A. Evelo, Tareq B. Malas, Michel Dumontier:
Nanopublications: A Growing Resource of Provenance-Centric Scientific Linked Data. eScience 2018: 83-92 - [c11]Francesco Ronzano, Emilio Centeno, Judith Pérez-Granado, Laura I. Furlong:
IBI at TREC 2018: Precision Medicine Track. TREC 2018 - 2017
- [c10]Tobias Kuhn, Egon L. Willighagen, Chris T. A. Evelo, Núria Queralt-Rosinach, Emilio Centeno, Laura I. Furlong:
Reliable Granular References to Changing Linked Data. ISWC (1) 2017: 436-451 - [c9]Francesco Ronzano, Laura Inés Furlong:
IBI-UPF at BARR-2017: Learning to Identify Abbreviations in Biomedical Literature System description. IberEval@SEPLN 2017: 255-263 - 2016
- [c8]Alba Gutiérrez-Sacristán, Àlex Bravo, Marta Portero-Tresserra, Olga Valverde, Antonio Armario, M. C. Blanco-Gandía, Adriana Farré, Lierni Fernández-Ibarrondo, Francina Fonseca, Jesús Giraldo, Angela Leis, Anna Mané, Miguel Angel Mayer, Sandra Montagud-Romero, Roser Nadal, Jordi Ortiz, Francisco Javier Pavon, Ezequiel Perez, Marta Rodríguez-Arias, Antonia Serrano, Marta Torrens, Vincent Warnault, Ferran Sanz, Laura I. Furlong:
Text Mining and Expert Curation to Develop a Database on Psychiatric Diseases and their Genes. SMBM 2016: 48-55 - [c7]Mélanie Courtot, Alex L. Mitchell, Maxim Scheremetjew, Janet Piñero González, Laura I. Furlong, Robert D. Finn, Helen E. Parkinson:
Slim-o-matic: a Semi-Automated Way to Generate Gene Ontology Slims. SWAT4LS 2016 - 2015
- [c6]Miguel Angel Mayer, Laura Inés Furlong, Pilar Torre, Ignasi Planas, Francesc Cots, Elisabet Izquierdo, Jordi Portabella, Javier Rovira, Alba Gutiérrez-Sacristán, Ferran Sanz:
Reuse of EHRs to Support Clinical Research in a Hospital of Reference. MIE 2015: 224-226 - [c5]Gang Fu, Evan Bolton, Núria Queralt-Rosinach, Laura Inés Furlong, Vinh Nguyen, Amit P. Sheth, Olivier Bodenreider, Michel Dumontier:
Exposing Provenance Metadata Using Different RDF Models. SWAT4LS 2015: 167-176 - 2013
- [c4]Núria Queralt-Rosinach, Laura Inés Furlong:
DisGeNET RDF: A Gene-Disease Association Linked Open Data Resource. SWAT4LS 2013 - 2012
- [c3]Núria Queralt-Rosinach, Laura Inés Furlong:
DisGeNET: from MySQL to Nanopublication, Modelling Gene-Disease Associations for the Semantic Web. SWAT4LS 2012 - 2010
- [c2]Markus Bundschus, Anna Bauer-Mehren, Volker Tresp, Laura Inés Furlong, Hans-Peter Kriegel:
Digging for knowledge with information extraction: a case study on human gene-disease associations. CIKM 2010: 1845-1848 - [c1]Dietrich Rebholz-Schuhmann, Antonio Jimeno-Yepes, Chen Li, Senay Kafkas, Ian Lewin, Ning Kang, Peter T. Corbett, David Milward, Ekaterina Buyko, Elena Beisswanger, Kerstin Hornbostel, Alexandre Kouznetsov, René Witte, Jonas B. Laurila, Christopher J. O. Baker, Cheng-Ju Kuo, Simon Clematide, Fabio Rinaldi, Richárd Farkas, György Móra, Kazuo Hara, Laura Inés Furlong, Michael Rautschka, Mariana L. Neves, Alberto D. Pascual-Montano, Qi Wei, Nigel Collier, Md. Faisal Mahbub Chowdhury, Alberto Lavelli, Rafael Berlanga Llavori, Roser Morante, Vincent Van Asch, Walter Daelemans, José Luís Marina, Erik M. van Mulligen, Jan A. Kors, Udo Hahn:
Assessment of NER solutions against the first and second CALBC silver standard corpus. Semantic Mining in Biomedicine 2010
Parts in Books or Collections
- 2009
- [p1]Laura I. Furlong, Ferran Sanz:
Identification of Sequence Variants of Genes from Biomedical Literature. Information Retrieval in Biomedicine 2009: 289-300
Informal and Other Publications
- 2020
- [i5]David Salgado, Irina M. Armean, Michael Baudis, Sergi Beltran, Salvador Capella-Gutiérrez, Denise Carvalho-Silva, Victoria Dominguez Del Angel, Joaquín Dopazo, Laura I. Furlong, Bo Gao, Leyla Jael García Castro, Dietlind Gerloff, Ivo Gut, Attila Gyenesei, Nina Habermann, John M. Hancock, Marc Hanauer, Eivind Hovig, Lennart F. Johansson, Thomas Keane, Jan Korbel, Katharina B. Lauer, Steve Laurie, Brane Leskosek, David Lloyd, Tomàs Marquès-Bonet, Hailiang Mei, Katalin Monostory, Janet Piñero, Krzysztof Poterlowicz, Ana Rath, Pubudu Samarakoon, Ferran Sanz, Gary Saunders, Daoud Sie, Morris A. Swertz, Kirill Tsukanov, Alfonso Valencia, Marko Vidak, Cristina Yenyxe González, Bauke Ylstra, Christophe Béroud:
The ELIXIR Human Copy Number Variations Community: building bioinformatics infrastructure for research. F1000Research 9: 1229 (2020) - 2018
- [i4]Tobias Kuhn, Albert Meroño-Peñuela, Alexander Malic, Jorrit H. Poelen, Allen H. Hurlbert, Emilio Centeno, Laura I. Furlong, Núria Queralt-Rosinach, Christine Chichester, Juan M. Banda, Egon L. Willighagen, Friederike Ehrhart, Chris T. A. Evelo, Tareq B. Malas, Michel Dumontier:
Nanopublications: A Growing Resource of Provenance-Centric Scientific Linked Data. CoRR abs/1809.06532 (2018) - 2017
- [i3]Tobias Kuhn, Egon L. Willighagen, Chris T. A. Evelo, Núria Queralt-Rosinach, Emilio Centeno, Laura I. Furlong:
Reliable Granular References to Changing Linked Data. CoRR abs/1708.09193 (2017) - 2015
- [i2]Gang Fu, Evan Bolton, Núria Queralt Rosinach, Laura Inés Furlong, Vinh Nguyen, Amit P. Sheth, Olivier Bodenreider, Michel Dumontier:
Exposing Provenance Metadata Using Different RDF Models. CoRR abs/1509.02822 (2015) - [i1]Vinh Nguyen, Olivier Bodenreider, Krishnaprasad Thirunarayan, Gang Fu, Evan Bolton, Núria Queralt Rosinach, Laura Inés Furlong, Michel Dumontier, Amit P. Sheth:
On Reasoning with RDF Statements about Statements using Singleton Property Triples. CoRR abs/1509.04513 (2015)
Coauthor Index
Núria Queralt-Rosinach
aka: Núria Queralt Rosinach
aka: Núria Queralt Rosinach
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