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ORCIDShun Sakuraba
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2020 – today
- 2022
[j12]Shun Sakuraba
, Qilin Xie, Kota Kasahara, Junichi Iwakiri, Hidetoshi Kono:
Extended ensemble simulations of a SARS-CoV-2 nsp1-5'-UTR complex. PLoS Comput. Biol. 18(1) (2022)- 2020
- [j11]Hideaki Takahashi, Shun Sakuraba, Akihiro Morita:
Large-Scale Parallel Implementation of Hartree-Fock Exchange Energy on Real-Space Grids Using 3D-Parallel Fast Fourier Transform. J. Chem. Inf. Model. 60(3): 1376-1389 (2020)
2010 – 2019
- 2019
- [j10]Hidetoshi Kono, Shun Sakuraba, Hisashi Ishida:
Correction: Free energy profiles for unwrapping the outer superhelical turn of nucleosomal DNA. PLoS Comput. Biol. 15(10) (2019) - [j9]Shimpei Nishida, Shun Sakuraba, Kiyoshi Asai, Michiaki Hamada:
Estimating Energy Parameters for RNA Secondary Structure Predictions Using Both Experimental and Computational Data. IEEE ACM Trans. Comput. Biol. Bioinform. 16(5): 1645-1655 (2019) - 2018
- [j8]Taichi Hagio, Shun Sakuraba, Junichi Iwakiri, Ryota Mori, Kiyoshi Asai:
Capturing alternative secondary structures of RNA by decomposition of base-pairing probabilities. BMC Bioinform. 19-S(1): 85-95 (2018) - [j7]Shun Sakuraba, Ikuo Fukuda:
Performance evaluation of the zero-multipole summation method in modern molecular dynamics software. J. Comput. Chem. 39(20): 1551-1560 (2018) - [j6]Hidetoshi Kono, Shun Sakuraba, Hisashi Ishida:
Free energy profiles for unwrapping the outer superhelical turn of nucleosomal DNA. PLoS Comput. Biol. 14(3) (2018) - 2016
- [j5]Jinzen Ikebe, Shun Sakuraba, Hidetoshi Kono:
H3 Histone Tail Conformation within the Nucleosome and the Impact of K14 Acetylation Studied Using Enhanced Sampling Simulation. PLoS Comput. Biol. 12(3) (2016) - 2014
- [j4]Jinzen Ikebe, Shun Sakuraba, Hidetoshi Kono:
Adaptive lambda square dynamics simulation: An efficient conformational sampling method for biomolecules. J. Comput. Chem. 35(1): 39-50 (2014) - [j3]Shun Sakuraba, Nobuyuki Matubayasi:
Ermod: Fast and versatile computation software for solvation free energy with approximate theory of solutions. J. Comput. Chem. 35(21): 1592-1608 (2014) - [j2]Hongchun Li, Shun Sakuraba, Aravind Chandrasekaran, Lee-Wei Yang:
Molecular Binding Sites Are Located Near the Interface of Intrinsic Dynamics Domains (IDDs). J. Chem. Inf. Model. 54(8): 2275-2285 (2014)
2000 – 2009
- 2009
- [j1]Shun Sakuraba, Akio Kitao:
Multiple Markov transition matrix method: Obtaining the stationary probability distribution from multiple simulations. J. Comput. Chem. 30(12): 1850-1858 (2009)
Coauthor Index
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