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ORCIDShuaicheng Li 0001
Shuai Cheng Li 0001 – 李帥成
Person information
- unicode name: 李帥成
- affiliation: City University of Hong Kong, Kowloon, Hong Kong
- affiliation: University of California, Berkeley, International Computer Science Institute, CA, USA
- affiliation (PhD): University of Waterloo, David R. Cheriton School of Computer Science, ON, Canada
- affiliation: National University of Singapore, Department of Computer Science, Singapore
Other persons with the same name
- Shuaicheng Li (aka: Shuai-Cheng Li, Shuai Cheng Li) — disambiguation page
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2020 – today
- 2024
[j58]Miaozhe Huo
, Yuepeng Jiang, Shuai Cheng Li:
Unlocking T-cell receptor-epitope insights with structural analysis. Nat. Comput. Sci. 4(7): 475-476 (2024)- [c27]Di Duan, Zehua Sun, Tao Ni, Shuaicheng Li, Xiaohua Jia, Weitao Xu, Tianxing Li:
F2Key: Dynamically Converting Your Face into a Private Key Based on COTS Headphones for Reliable Voice Interaction. MobiSys 2024: 127-140 - 2023
- [j57]Yuepeng Jiang, Miaozhe Huo, Shuai Cheng Li:
TEINet: a deep learning framework for prediction of TCR-epitope binding specificity. Briefings Bioinform. 24(2) (2023) - [j56]Yuepeng Jiang, Shuai Cheng Li:
Deep autoregressive generative models capture the intrinsics embedded in T-cell receptor repertoires. Briefings Bioinform. 24(2) (2023) - [j55]Wei Zhang, Jia Ju, Yong Zhou, Teng Xiong, Mengyao Wang, Chaohui Li, Shixin Lu, Zefeng Lu, Liya Lin, Xiao Liu, Shuaicheng Li:
IMperm: a fast and comprehensive IMmune Paired-End Reads Merger for sequencing data. Briefings Bioinform. 24(2) (2023) - [j54]Jiaxing Chen, Yen Kaow Ng, Lu Lin, Xianglilan Zhang, Shuaicheng Li:
On triangle inequalities of correlation-based distances for gene expression profiles. BMC Bioinform. 24(1): 40 (2023) - [j53]Xueying Wang, Lingxi Chen, Wei Liu, Yuanzheng Zhang, Dawei Liu, Chenxin Zhou, Shuai Shi, Jiajie Dong, Zhengtao Lai, Bingran Zhao, Wenjingyu Zhang, Haoyue Cheng, Shuaicheng Li:
TIMEDB: tumor immune micro-environment cell composition database with automatic analysis and interactive visualization. Nucleic Acids Res. 51(D1): 1417-1424 (2023) - 2022
- [j52]Lingxi Chen, Yuhao Qing, Ruikang Li, Chaohui Li, Hechen Li, Xikang Feng, Shuai Cheng Li:
Somatic variant analysis suite: copy number variation clonal visualization online platform for large-scale single-cell genomics. Briefings Bioinform. 23(1) (2022) - [j51]Ruohan Wang, Xiang-Li-Lan Zhang, Jianping Wang, Shuai Cheng Li:
DeepHost: phage host prediction with convolutional neural network. Briefings Bioinform. 23(1) (2022) - [j50]Ruohan Wang, Yuwei Zhang, Mengbo Wang, Xikang Feng, Jianping Wang, Shuai Cheng Li:
Resolving single-cell copy number profiling for large datasets. Briefings Bioinform. 23(4) (2022) - [j49]Xuedong Wang, Yanle Liu, Xinyao Miao, Yin Chen, Xiao Cao, Yuchen Zhang, Shuaicheng Li, Qin Zhou:
Correction: DENSEN: a convolutional neural network for estimating chronological ages from panoramic radiographs. BMC Bioinform. 23(1): 557 (2022) - [j48]Xuedong Wang, Yanle Liu, Xinyao Miao, Yin Chen, Xiao Cao, Yuchen Zhang, Shuaicheng Li, Qin Zhou:
DENSEN: a convolutional neural network for estimating chronological ages from panoramic radiographs. BMC Bioinform. 23-S(3): 426 (2022) - [j47]Jiaxing Chen, Yen Kaow Ng, Lu Lin, Xianglilan Zhang, Shuaicheng Li:
Correction: On triangle inequalities of correlation-based distances for gene expression profiles. BMC Bioinform. 23-S(3): 571 (2022) - [j46]Wan Nie, Deguang Liu, Shuaicheng Li, Haizhu Yu, Yao Fu:
Nucleophilicity Prediction Using Graph Neural Networks. J. Chem. Inf. Model. 62(18): 4319-4328 (2022) - 2021
- [j45]Wenlong Jia, Chang Xu, Shuai Cheng Li:
Resolving complex structures at oncovirus integration loci with conjugate graph. Briefings Bioinform. 22(6) (2021) - [j44]Lu Liu, Xikang Feng, Haimei Li, Shuai Cheng Li, Qiujin Qian, Yufeng Wang:
Deep learning model reveals potential risk genes for ADHD, especially Ephrin receptor gene EPHA5. Briefings Bioinform. 22(6) (2021) - [j43]Shuai Wang, Yiqi Jiang, Shuai Cheng Li:
PStrain: an iterative microbial strains profiling algorithm for shotgun metagenomic sequencing data. Bioinform. 36(22-23): 5499-5506 (2021) - 2020
- [j42]Zicheng Zhao, Yingxiao Zhou, Shuai Wang, Xiuqing Zhang, Changfa Wang, Shuai Cheng Li:
LDscaff: LD-based scaffolding of de novo genome assemblies. BMC Bioinform. 21-S(21): 570 (2020) - [j41]Xikang Feng, Lingxi Chen, Zishuai Wang, Shuai Cheng Li:
I-Impute: a self-consistent method to impute single cell RNA sequencing data. BMC Genom. 21(S-10) (2020) - [j40]Wenlong Jia, Hechen Li, Shiying Li, Lingxi Chen, Shuai Cheng Li:
Oviz-Bio: a web-based platform for interactive cancer genomics data visualization. Nucleic Acids Res. 48(Webserver-Issue): W415-W426 (2020)
2010 – 2019
- 2019
- [j39]Lingxi Chen, Jiao Xu, Shuai Cheng Li:
DeepMF: deciphering the latent patterns in omics profiles with a deep learning method. BMC Bioinform. 20-S(23): 648 (2019) - [j38]Ruohan Wang, Zishuai Wang, Jianping Wang, Shuaicheng Li:
SpliceFinder: ab initio prediction of splice sites using convolutional neural network. BMC Bioinform. 20-S(23): 652 (2019) - [j37]Chen Li, Yiqi Jiang, Shuaicheng Li:
LEMON: a method to construct the local strains at horizontal gene transfer sites in gut metagenomics. BMC Bioinform. 20-S(23): 702 (2019) - [j36]Xikang Feng, Zishuai Wang, Hechen Li, Shuai Cheng Li:
MIRIA: a webserver for statistical, visual and meta-analysis of RNA editing data in mammals. BMC Bioinform. 20-S(24): 596 (2019) - [j35]Yilin Liu, Jiao Xu, Miaoxia Chen, Changfa Wang, Shuai Cheng Li:
A unified STR profiling system across multiple species with whole genome sequencing data. BMC Bioinform. 20-S(24): 671 (2019) - [j34]Yanlin Zhang, Weiwei Liu, Yu Lin, Yen Kaow Ng, Shuaicheng Li:
Large-scale 3D chromatin reconstruction from chromosomal contacts. BMC Genom. 20(S2) (2019) - [c26]Qi Niu, Shaoliang Peng, Xiang-Li-Lan Zhang, Shuai Cheng Li, Ying Xu, Xiang-Cheng Xie, Yi-Gang Tong:
LysoPhD: predicting functional prophages in bacterial genomes from high-throughput sequencing. BIBM 2019: 1-5 - 2018
- [j33]Zhoujian Xiao, Yuwei Zhang, Runsheng Yu, Yin Chen, Xiaosen Jiang, Ziwei Wang, Shuaicheng Li:
In silico design of MHC class I high binding affinity peptides through motifs activation map. BMC Bioinform. 19-S(19): 13-24 (2018) - [j32]Mengxuan Lyu, Jiaxing Chen, Yiqi Jiang, Wei Dong, Zhou Fang, Shuai Cheng Li:
KDiamend: a package for detecting key drivers in a molecular ecological network of disease. BMC Syst. Biol. 12(1): 89-99 (2018) - [j31]Joshua Chan Mun Wei, Zicheng Zhao, Shuai Cheng Li, Yen Kaow Ng:
NGS-based likelihood ratio for identifying contributors in two- and three-person DNA mixtures. Comput. Biol. Chem. 74: 428-433 (2018) - [j30]Lusheng Wang, Shuai Cheng Li, Yi-Ping Phoebe Chen:
Guest Editorial for the 15th Asia Pacific Bioinformatics Conference. IEEE ACM Trans. Comput. Biol. Bioinform. 15(5): 1513-1514 (2018) - [c25]Yen Kaow Ng, Wenlong Jia, Shuai Cheng Li:
Placing Segments on Parallel Arcs. IWOCA 2018: 298-310 - 2017
- [j29]Jianwei Zhu, Haicang Zhang, Shuai Cheng Li, Chao Wang, Lupeng Kong, Shiwei Sun, Wei-Mou Zheng, Dongbo Bu:
Improving protein fold recognition by extracting fold-specific features from predicted residue-residue contacts. Bioinform. 33(23): 3749-3757 (2017) - 2016
- [j28]Chao Wang, Haicang Zhang, Wei-Mou Zheng, Dong Xu, Jianwei Zhu, Bing Wang, Kang Ning, Shiwei Sun, Shuai Cheng Li, Dongbo Bu:
FALCON@home: a high-throughput protein structure prediction server based on remote homologue recognition. Bioinform. 32(3): 462-464 (2016) - [j27]Fei Guo, Yijie Ding, Shuai Cheng Li, Chao Shen, Lusheng Wang:
Protein-protein interface prediction based on hexagon structure similarity. Comput. Biol. Chem. 63: 83-88 (2016) - [c24]Zicheng Zhao, Yen Kaow Ng, Xiaodong Fang, Shuaicheng Li:
Eliminating heterozygosity from reads through coverage normalization. BIBM 2016: 174-177 - [c23]Bowen Tan, Zhe Zhang, Zicheng Zhao, Shengbin Li, Shuai Cheng Li:
Finding more effective microsatellite markers for forensics. BIBM 2016: 658-663 - [c22]Lu Zhang, Jiaxing Chen, Shuai Cheng Li:
More accurate models for detecting gene-gene interactions from public expression compendia. BIBM 2016: 1871-1878 - [i1]Dan Wang, Shuaicheng Li, Fei Guo, Lusheng Wang:
Core-genome scaffold comparison reveals the prevalence that inversion events are associated with pairs of inverted repeats. CoRR abs/1608.02375 (2016) - 2015
- [j26]Yen Kaow Ng, Linzhi Yin, Hirotaka Ono, Shuai Cheng Li:
Finding All Longest Common Segments in Protein Structures Efficiently. IEEE ACM Trans. Comput. Biol. Bioinform. 12(3): 644-655 (2015) - [j25]Dandan Song, Jiaxing Chen, Guang Chen, Ning Li, Jin Li, Jun Fan, Dongbo Bu, Shuai Cheng Li:
Parameterized BLOSUM Matrices for Protein Alignment. IEEE ACM Trans. Comput. Biol. Bioinform. 12(3): 686-694 (2015) - [c21]Xuefeng Cui, Hiroyuki Kuwahara, Shuai Cheng Li, Xin Gao:
Compare local pocket and global protein structure models by small structure patterns. BCB 2015: 355-365 - [c20]Lu Zhang, Yen Kaow Ng, Shuaicheng Li:
Reconstructing directed gene regulatory network by only gene expression data. BIBM 2015: 163-170 - [c19]Jin Li, Yen Kaow Ng, Xingwu Liu, Shuai Cheng Li:
On the Near-Linear Correlation of the Eigenvalues Across BLOSUM Matrices. ISBRA 2015: 199-210 - 2014
- [j24]Xuefeng Cui, Shuai Cheng Li, Lin He, Ming Li:
Fingerprinting protein structures effectively and efficiently. Bioinform. 30(7): 949-955 (2014) - [j23]Xiaowen Liu, Matthew W. Segar, Shuai Cheng Li, Sangtae Kim:
Spectral probabilities of top-down tandem mass spectra. BMC Genom. 15(S-1): S9 (2014) - [j22]Fei Guo, Shuai Cheng Li, Pufeng Du, Lusheng Wang:
Probabilistic Models for Capturing More Physicochemical Properties on Protein-Protein Interface. J. Chem. Inf. Model. 54(6): 1798-1809 (2014) - [j21]Ying Fan, Ruoshui Lu, Lusheng Wang, Massimo Andreatta, Shuai Cheng Li:
Quantifying Significance of MHC II Residues. IEEE ACM Trans. Comput. Biol. Bioinform. 11(1): 17-25 (2014) - [j20]Laleh Soltan Ghoraie, Forbes J. Burkowski, Shuai Cheng Li, Mu Zhu:
Residue-Specific Side-Chain Polymorphismsvia Particle Belief Propagation. IEEE ACM Trans. Comput. Biol. Bioinform. 11(1): 33-41 (2014) - 2013
- [j19]Shuai Cheng Li:
The Difficulty Of Protein Structure Alignment Under The RMSD. Algorithms Mol. Biol. 8: 1 (2013) - [j18]Xuefeng Cui, Shuai Cheng Li, Dongbo Bu, Babak Alipanahi, Ming Li:
Protein Structure Idealization: How accurately is it possible to model protein structures with dihedral angles? Algorithms Mol. Biol. 8: 5 (2013) - [j17]Daniel Holtby, Shuai Cheng Li, Ming Li:
LoopWeaver: Loop Modeling by the Weighted Scaling of Verified Proteins. J. Comput. Biol. 20(3): 212-223 (2013) - [j16]Fei Guo, Shuai Cheng Li, Wenji Ma, Lusheng Wang:
Detecting Protein Conformational Changes in Interactions via Scaling Known Structures. J. Comput. Biol. 20(10): 765-779 (2013) - [c18]Fei Guo, Shuai Cheng Li, Wenji Ma, Lusheng Wang:
Detecting Protein Conformational Changes in Interactions via Scaling Known Structures. RECOMB 2013: 58-74 - [c17]Xuefeng Cui, Shuai Cheng Li, Dongbo Bu, Ming Li:
Towards Reliable Automatic Protein Structure Alignment. WABI 2013: 18-32 - 2012
- [j15]Fei Guo, Shuai Cheng Li, Lusheng Wang, Daming Zhu:
Protein-protein binding site identification by enumerating the configurations. BMC Bioinform. 13: 158 (2012) - [j14]Shuai Cheng Li, Dongbo Bu, Ming Li:
Residues with Similar Hexagon Neighborhoods Share Similar Side-Chain Conformations. IEEE ACM Trans. Comput. Biol. Bioinform. 9(1): 240-248 (2012) - [j13]Shuai Cheng Li, Dongbo Bu, Ming Li:
Clustering 100, 000 Protein Structure Decoys in Minutes. IEEE ACM Trans. Comput. Biol. Bioinform. 9(3): 765-773 (2012) - [c16]Yen Kaow Ng, Hirotaka Ono, Ling Ge, Shuai Cheng Li:
Finding Longest Common Segments in Protein Structures in Nearly Linear Time. CPM 2012: 334-348 - [c15]Fei Guo, Shuai Cheng Li, Lusheng Wang:
P-Binder: A System for the Protein-Protein Binding Sites Identification. ISBRA 2012: 127-138 - [c14]Daniel Holtby, Shuai Cheng Li, Ming Li:
LoopWeaver - Loop Modeling by the Weighted Scaling of Verified Proteins. RECOMB 2012: 113-126 - [c13]Xuefeng Cui, Shuai Cheng Li, Dongbo Bu, Babak Alipanahi Ramandi, Ming Li:
How Accurately Can We Model Protein Structures with Dihedral Angles? WABI 2012: 274-287 - 2011
- [j12]Babak Alipanahi, Xin Gao, Emre Karakoç, Shuai Cheng Li, Frank J. Balbach, Guangyu Feng, Logan Donaldson, Ming Li:
Error Tolerant NMR Backbone Resonance Assignment and Automated Structure Generation. J. Bioinform. Comput. Biol. 9(1): 15-41 (2011) - [j11]Shuai Cheng Li, Dongbo Bu, Jinbo Xu, Ming Li:
Finding Nearly Optimal GDT Scores. J. Comput. Biol. 18(5): 693-704 (2011) - [j10]Bonnie Kirkpatrick, Shuai Cheng Li, Richard M. Karp, Eran Halperin:
Pedigree Reconstruction Using Identity by Descent. J. Comput. Biol. 18(11): 1481-1493 (2011) - [j9]Fei Guo, Shuai Cheng Li, Lusheng Wang:
Protein-Protein Binding Sites Prediction by 3D Structural Similarities. J. Chem. Inf. Model. 51(12): 3287-3294 (2011) - [j8]Shuai Cheng Li, Yen Kaow Ng:
On protein structure alignment under distance constraint. Theor. Comput. Sci. 412(32): 4187-4199 (2011) - [c12]Bonnie Kirkpatrick, Shuai Cheng Li, Richard M. Karp, Eran Halperin:
Pedigree Reconstruction Using Identity by Descent. RECOMB 2011: 136-152 - 2010
- [j7]Shuai Cheng Li, Yen Kaow Ng:
Calibur: a tool for clustering large numbers of protein decoys. BMC Bioinform. 11: 25 (2010) - [j6]Yuzhong Zhao, Babak Alipanahi, Shuai Cheng Li, Ming Li:
Protein Secondary Structure Prediction Using NMR Chemical Shift Data. J. Bioinform. Comput. Biol. 8(5): 867-884 (2010)
2000 – 2009
- 2009
- [j5]Xin Gao, Jinbo Xu, Shuai Cheng Li, Ming Li:
Predicting Local Quality of a Sequence-Structure Alignment. J. Bioinform. Comput. Biol. 7(5): 789-810 (2009) - [j4]Shuai Cheng Li, Ming Li:
On two open problems of 2-interval patterns. Theor. Comput. Sci. 410(24-25): 2410-2423 (2009) - [j3]Dongbo Bu, Ming Li, Shuai Cheng Li, Jianbo Qian, Jinbo Xu:
Finding compact structural motifs. Theor. Comput. Sci. 410(30-32): 2834-2839 (2009) - [c11]Shuai Cheng Li, Yen Kaow Ng:
On Protein Structure Alignment under Distance Constraint. ISAAC 2009: 65-76 - 2008
- [j2]Shuai Cheng Li, Yen Kaow Ng, Louxin Zhang:
A PTAS For The k-Consensus Structures Problem Under Squared Euclidean Distance. Algorithms 1(2): 43-51 (2008) - [c10]Shuai Cheng Li, Dongbo Bu, Jinbo Xu, Ming Li:
Finding Largest Well-Predicted Subset of Protein Structure Models. CPM 2008: 44-55 - [c9]Shuai Cheng Li, Yen Kaow Ng, Louxin Zhang:
A PTAS for the k-Consensus Structures Problem Under Euclidean Squared Distance. FAW 2008: 35-44 - [c8]Shuai Cheng Li, Dongbo Bu, Xin Gao, Jinbo Xu, Ming Li:
Designing succinct structural alphabets. ISMB 2008: 182-189 - 2007
- [c7]Jianbo Qian, Shuai Cheng Li, Dongbo Bu, Ming Li, Jinbo Xu:
Finding Compact Structural Motifs. CPM 2007: 142-149 - [c6]Xin Gao, Shuaicheng Li, Yinan Lu:
New Algorithms for the Spaced Seeds. FAW 2007: 50-61 - 2006
- [c5]Shuai Cheng Li:
Faster Algorithms for Finding Missing Patterns. CATS 2006: 107-111 - [c4]Shuai Cheng Li, Ming Li:
On the Complexity of the Crossing Contact Map Pattern Matching Problem. WABI 2006: 231-241 - 2005
- [c3]Xia Cao, Shuai Cheng Li, Anthony K. H. Tung:
Indexing DNA Sequences Using q-Grams. DASFAA 2005: 4-16 - 2004
- [j1]Xia Cao, Shuai Cheng Li, Beng Chin Ooi, Anthony K. H. Tung:
Piers: An Efficient Model for Similarity Search in DNA Sequence Databases. SIGMOD Rec. 33(2): 39-44 (2004) - [c2]Shuai Cheng Li, Hon Wai Leong, Steven K. Quek:
New Approximation Algorithms for Some Dynamic Storage Allocation Problems. COCOON 2004: 339-348 - [c1]Xia Cao, Anthony K. H. Tung, Beng Chin Ooi, Kian-Lee Tan, Shuai Cheng Li:
String Join Using Precedence Count Matrix. SSDBM 2004: 345-348
Coauthor Index
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