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2020 – today
- 2024
[j6]Miguel Reboiro-Jato, Daniel Pérez-Rodríguez, Miguel José Da Silva, David Vila-Fernández, Cristina P. Vieira, Jorge Vieira, Hugo López-Fernández:
SEDA 2024 update: enhancing the SEquence DAtaset builder for seamless integration into automated data analysis pipelines. BMC Bioinform. 25(1): 200 (2024)- [j5]Daniel Glez-Peña, Hugo López-Fernández, Pedro Duque
, Cristina P. Vieira, Jorge Vieira:
Inferences on the evolution of the ascorbic acid synthesis pathway in insects using Phylogenetic Tree Collapser (PTC), a tool for the automated collapsing of phylogenetic trees using taxonomic information. J. Integr. Bioinform. 21(2) (2024) - [j4]Hugo López-Fernández, Miguel Pinto, Cristina P. Vieira, Pedro Duque, Miguel Reboiro-Jato, Jorge Vieira:
Auto-phylo v2 and auto-phylo-pipeliner: building advanced, flexible, and reusable pipelines for phylogenetic inferences, estimation of variability levels and identification of positively selected amino acid sites. J. Integr. Bioinform. 21(2) (2024) - 2023
- [j3]André D. Sousa, Sara Rocha, Jorge Vieira, Miguel Reboiro-Jato, Hugo López-Fernández, Cristina P. Vieira:
On the identification of potential novel therapeutic targets for spinocerebellar ataxia type 1 (SCA1) neurodegenerative disease using EvoPPI3. J. Integr. Bioinform. 20(2) (2023) - [c9]Hugo López-Fernández, Miguel Pinto, Cristina P. Vieira, Pedro Duque, Miguel Reboiro-Jato, Jorge Vieira:
Auto-phylo: A Pipeline Maker for Phylogenetic Studies. PACBB 2023: 24-33 - 2022
- [j2]Hugo López-Fernández, Pedro Duque, Noé Vázquez, Florentino Fdez-Riverola, Miguel Reboiro-Jato, Cristina P. Vieira, Jorge Vieira:
SEDA: A Desktop Tool Suite for FASTA Files Processing. IEEE ACM Trans. Comput. Biol. Bioinform. 19(3): 1850-1860 (2022) - [c8]Miguel Reboiro-Jato, Jorge Vieira, Sara Rocha, André D. Sousa, Hugo López-Fernández, Cristina P. Vieira:
EvoPPI 2: A Web and Local Platform for the Comparison of Protein-Protein Interaction Data from Multiple Sources from the Same and Distinct Species. PACBB 2022: 101-110 - 2021
- [c7]Hugo López-Fernández, Pedro Ferreira, Miguel Reboiro-Jato, Cristina P. Vieira, Jorge Vieira:
The pegi3s Bioinformatics Docker Images Project. PACBB 2021: 31-40 - 2020
- [c6]Hugo López-Fernández, Cristina P. Vieira, Florentino Fdez-Riverola, Miguel Reboiro-Jato, Jorge Vieira:
Inferences on Mycobacterium Leprae Host Immune Response Escape and Antibiotic Resistance Using Genomic Data and GenomeFastScreen. PACBB 2020: 42-50
2010 – 2019
- 2019
- [c5]Hugo López-Fernández, Pedro Duque, Noé Vázquez, Florentino Fdez-Riverola, Miguel Reboiro-Jato, Cristina P. Vieira, Jorge Vieira:
Inferring Positive Selection in Large Viral Datasets. PACBB 2019: 61-69 - 2018
- [c4]Hugo López-Fernández, Pedro Duque, Sílvia Henriques, Noé Vázquez, Florentino Fdez-Riverola, Cristina P. Vieira, Miguel Reboiro-Jato, Jorge Vieira:
A Bioinformatics Protocol for Quickly Creating Large-Scale Phylogenetic Trees. PACBB 2018: 88-96 - [c3]Noé Vázquez, Sara Rocha, Hugo López-Fernández, André Torres, Rui Camacho, Florentino Fdez-Riverola, Jorge Vieira, Cristina P. Vieira, Miguel Reboiro-Jato:
EvoPPI: A Web Application to Compare Protein-Protein Interactions (PPIs) from Different Databases and Species. PACBB 2018: 149-156 - 2017
- [c2]Noé Vázquez, Cristina P. Vieira, Bárbara S. R. Amorim, André Torres, Hugo López-Fernández, Florentino Fdez-Riverola, José L. R. Sousa, Miguel Reboiro-Jato, Jorge Vieira:
Automated Collection and Sharing of Adaptive Amino Acid Changes Data. PACBB 2017: 18-25 - 2012
- [j1]David Reboiro-Jato, Miguel Reboiro-Jato, Florentino Fdez-Riverola, Cristina P. Vieira, Nuno A. Fonseca, Jorge Vieira:
ADOPS - Automatic Detection Of Positively Selected Sites. J. Integr. Bioinform. 9(3) (2012)
2000 – 2009
- 2009
- [c1]Nuno A. Fonseca, Vítor Santos Costa, Rui Camacho, Cristina P. Vieira, Jorge Vieira:
Partitional Clustering of Protein Sequences - An Inductive Logic Programming Approach. IWANN (2) 2009: 1001-1004
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