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Richa Agarwala
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2020 – today
- 2021
- [j19]Alexandre Souvorov, Richa Agarwala
:
SAUTE: sequence assembly using target enrichment. BMC Bioinform. 22(1): 375 (2021)
2010 – 2019
- 2019
- [j18]Eric W. Sayers, Richa Agarwala
, Evan Bolton
, J. Rodney Brister, Kathi Canese, Karen Clark, Ryan Connor, Nicolas Fiorini, Kathryn Funk, Timothy Hefferon, J. Bradley Holmes, Sunghwan Kim
, Avi Kimchi, Paul A. Kitts, Stacy Lathrop, Zhiyong Lu, Thomas L. Madden, Aron Marchler-Bauer, Lon Phan, Valerie A. Schneider, Conrad L. Schoch, Kim D. Pruitt, James Ostell:
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 47(Database-Issue): D23-D28 (2019) - 2010
- [j17]Xusheng Wang, Richa Agarwala, John A. Capra, Zugen Chen, Deanna M. Church, Daniel C. Ciobanu, Zhengsheng Li, Lu Lu, Khyobeni Mozhui, Megan K. Mulligan
, Stanley F. Nelson, Katherine S. Pollard, William Taylor, Donald B. Thomason, Robert W. Williams:
High-throughput sequencing of the DBA/2J mouse genome. BMC Bioinform. 11(S-4): O7 (2010)
2000 – 2009
- 2009
- [j16]William Klimke, Richa Agarwala
, Azat Badretdin, Slava Chetvernin, Stacy Ciufo, Boris Fedorov, Boris Kiryutin, Kathleen O'Neill, Wolfgang Resch
, Sergei Resenchuk, Susan Schafer, Igor Tolstoy, Tatiana A. Tatusova:
The National Center for Biotechnology Information's Protein Clusters Database. Nucleic Acids Res. 37(Database-Issue): 216-223 (2009) - 2008
- [j15]Aleksandr Morgulis, George Coulouris, Yan Raytselis, Thomas L. Madden, Richa Agarwala
, Alejandro A. Schäffer:
Database indexing for production MegaBLAST searches. Bioinform. 24(16): 1757-1764 (2008) - [j14]Aleksandr Morgulis, George Coulouris, Yan Raytselis, Thomas L. Madden, Richa Agarwala
, Alejandro A. Schäffer:
Database indexing for production MegaBLAST searches. Bioinform. 24(24): 2942 (2008) - 2007
- [j13]Jason S. Papadopoulos, Richa Agarwala
:
COBALT: constraint-based alignment tool for multiple protein sequences. Bioinform. 23(9): 1073-1079 (2007) - [j12]Alejandro A. Schäffer, Edward Stallknecht Rice, William J. Cook, Richa Agarwala
:
rh_tsp_map 3.0: end-to-end radiation hybrid mapping with improved speed and quality control. Bioinform. 23(9): 1156-1158 (2007) - [j11]Sergey A. Shiryev, Jason S. Papadopoulos, Alejandro A. Schäffer, Richa Agarwala
:
Improved BLAST searches using longer words for protein seeding. Bioinform. 23(21): 2949-2951 (2007) - 2006
- [j10]Aleksandr Morgulis, E. Michael Gertz
, Alejandro A. Schäffer, Richa Agarwala
:
WindowMasker: window-based masker for sequenced genomes. Bioinform. 22(2): 134-141 (2006) - [j9]Aleksandr Morgulis, E. Michael Gertz
, Alejandro A. Schäffer, Richa Agarwala
:
A Fast and Symmetric DUST Implementation to Mask Low-Complexity DNA Sequences. J. Comput. Biol. 13(5): 1028-1040 (2006) - 2000
- [j8]Richa Agarwala
, Leslie G. Biesecker, Alejandro A. Schäffer:
Inverse inbreeding coefficient problems with an application to linkage analysis of recessive diseases in inbred populations. Discret. Appl. Math. 104(1-3): 3-44 (2000)
1990 – 1999
- 1999
- [j7]Richa Agarwala
, Vineet Bafna
, Martin Farach
, Mike Paterson, Mikkel Thorup:
On the Approximability of Numerical Taxonomy (Fitting Distances by Tree Metrics). SIAM J. Comput. 28(3): 1073-1085 (1999) - [c6]Richa Agarwala, Leslie G. Biesecker, Alejandro A. Schäffer:
Inverse Inbreeding Coefficient Problems with an Application to Linkage Analysis of Recessive Diseases in Inbred Populations. SODA 1999: 840-841 - 1997
- [j6]Richa Agarwala
, Serafim Batzoglou, Vlado Dancík, Scott E. Decatur, Sridhar Hannenhalli, Martin Farach, S. Muthukrishnan, Steven Skiena:
Local Rules for Protein Folding on a Triangular Lattice and Generalized Hydrophobicity in the HP Model. J. Comput. Biol. 4(3): 275-296 (1997) - [c5]Richa Agarwala
, Serafim Batzoglou, Vlado Dancík, Scott E. Decatur, Martin Farach
, Sridhar Hannenhalli, S. Muthukrishnan, Steven Skiena:
Local rules for protein folding on a triangular lattice and generalized hydrophobicity in the HP model. RECOMB 1997: 1-2 - [c4]Richa Agarwala, Serafim Batzoglou, Vlado Dancík, Scott E. Decatur, Martin Farach, Sridhar Hannenhalli, Steven Skiena:
Local Rules for Protein Folding on a Triangular Lattice and Generalized Hydrophobicity in the HP Model. SODA 1997: 390-399 - 1996
- [j5]Richa Agarwala, David Fernández-Baca:
Simple Algorithms for Perfect Phylogeny and Triangulating Colored Graphs. Int. J. Found. Comput. Sci. 7(1): 11-22 (1996) - [j4]Richa Agarwala
, David Fernández-Baca:
Weighted Multidimensional Search and Its Application to Convex Optimization. SIAM J. Comput. 25(1): 83-99 (1996) - [c3]Richa Agarwala, Vineet Bafna, Martin Farach, Babu O. Narayanan, Mike Paterson, Mikkel Thorup:
On the Approximability of Numerical Taxonomy (Fitting Distances by Tree Metrics). SODA 1996: 365-372 - 1995
- [j3]Richa Agarwala
, David Fernández-Baca:
Weighted Search in the Plane. Inf. Process. Lett. 54(2): 97-100 (1995) - [j2]Richa Agarwala
, David Fernández-Baca, Giora Slutzki:
Fast Algorithms for Inferring Evolutionary Trees. J. Comput. Biol. 2(3): 397-407 (1995) - 1994
- [j1]Richa Agarwala
, David Fernández-Baca:
A Polynomial-Time Algorithm for the Perfect Phylogeny Problem when the Number of Character States is Fixed. SIAM J. Comput. 23(6): 1216-1224 (1994) - 1993
- [c2]Richa Agarwala, David Fernández-Baca:
A Polynomial-Time Algorithm for the Perfect Phylogeny Problem when the Number of Character States is Fixed. FOCS 1993: 140-147 - 1992
- [c1]Richa Agarwala
, David Fernández-Baca:
Solving the Lagrangian Dual when the Number of Constraints is Fixed. FSTTCS 1992: 164-175
Coauthor Index
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