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Journal Articles
- 2021
[j9]Christopher Wilks
, Omar Ahmed, Daniel N. Baker, David Zhang, Leonardo Collado-Torres, Ben Langmead:
Megadepth: efficient coverage quantification for BigWigs and BAMs. Bioinform. 37(18): 3014-3016 (2021)- 2019
- [j8]Ben Langmead, Christopher Wilks, Valentin Antonescu, Rone Charles:
Scaling read aligners to hundreds of threads on general-purpose processors. Bioinform. 35(3): 421-432 (2019) - 2018
- [j7]Christopher Wilks, Phani Gaddipati, Abhinav Nellore, Ben Langmead:
Snaptron: querying splicing patterns across tens of thousands of RNA-seq samples. Bioinform. 34(1): 114-116 (2018) - 2017
- [j6]Abhinav Nellore, Leonardo Collado-Torres, Andrew E. Jaffe, José Alquicira-Hernández, Christopher Wilks, Jacob Pritt, James Morton, Jeffrey T. Leek, Ben Langmead:
Rail-RNA: scalable analysis of RNA-seq splicing and coverage. Bioinform. 33(24): 4033-4040 (2017) - 2016
- [j5]Abhinav Nellore, Christopher Wilks, Kasper D. Hansen, Jeffrey T. Leek, Ben Langmead:
Rail-dbGaP: analyzing dbGaP-protected data in the cloud with Amazon Elastic MapReduce. Bioinform. 32(16): 2551-2553 (2016) - 2014
- [j4]Christopher Wilks, Melissa S. Cline, Erich Weiler, Mark Diekhans, Brian Craft, Christy Martin, Daniel Murphy, Howdy Pierce, John Black, Donavan Nelson, Brian Litzinger, Thomas Hatton, Lori Maltbie, Michael Ainsworth, Patrick Allen, Linda Rosewood, Elizabeth Mitchell, Bradley Smith, Jim Warner, John Groboske, Haifang Telc, Daniel Wilson, Brian Sanford, Hannes Schmidt, David Haussler, Daniel Maltbie:
The Cancer Genomics Hub (CGHub): overcoming cancer through the power of torrential data. Database J. Biol. Databases Curation 2014 (2014) - 2013
- [j3]Mary Goldman, Brian Craft, Teresa Swatloski, Kyle Ellrott, Melissa S. Cline, Mark Diekhans, Singer Ma, Chris Wilks, Joshua M. Stuart, David Haussler, Jingchun Zhu:
The UCSC Cancer Genomics Browser: update 2013. Nucleic Acids Res. 41(Database-Issue): 949-954 (2013) - 2012
- [j2]Philippe Lamesch, Tanya Z. Berardini, Donghui Li, David Swarbreck, Christopher Wilks, Rajkumar Sasidharan, Robert J. Muller, Kate Dreher, Debbie L. Alexander, Margarita Garcia-Hernandez, Athikkattuvalasu S. Karthikeyan, Cynthia H. Lee, William D. Nelson, Larry Ploetz, Shanker Singh, April Wensel, Eva Huala:
The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools. Nucleic Acids Res. 40(Database-Issue): 1202-1210 (2012) - 2008
- [j1]David Swarbreck, Christopher Wilks, Philippe Lamesch, Tanya Z. Berardini, Margarita Garcia-Hernandez, Hartmut Foerster, Donghui Li, Tom Meyer, Robert J. Muller, Larry Ploetz, Amie Radenbaugh, Shanker Singh, Vanessa Swing, Christophe Tissier, Peifen Zhang, Eva Huala:
The Arabidopsis Information Resource (TAIR): gene structure and function annotation. Nucleic Acids Res. 36(Database-Issue): 1009-1014 (2008)
Conference and Workshop Papers
- 2005
- [c1]Christopher Wilks, Sami Khuri:
A Fast Shotgun Assembly Heuristic. CSB Workshops 2005: 122-123
Coauthor Index
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