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Marcel J. T. Reinders
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- affiliation: Delft University of Technology, Netherlands
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2020 – today
- 2024
- [j91]Ramin Ghorbani
, Marcel J. T. Reinders
, David M. J. Tax
:
Personalized anomaly detection in PPG data using representation learning and biometric identification. Biomed. Signal Process. Control. 94: 106216 (2024) - [j90]Lieke Michielsen
, Marcel J. T. Reinders, Ahmed Mahfouz:
Predicting cell population-specific gene expression from genomic sequence. Frontiers Bioinform. 4 (2024) - [i8]Mahdi Naderibeni, Marcel J. T. Reinders, Liang Wu, David M. J. Tax:
Learning solutions of parametric Navier-Stokes with physics-informed neural networks. CoRR abs/2402.03153 (2024) - [i7]Ramin Ghorbani, Marcel J. T. Reinders, David M. J. Tax:
RESTAD: REconstruction and Similarity based Transformer for time series Anomaly Detection. CoRR abs/2405.07509 (2024) - [i6]Ramin Ghorbani, Marcel J. T. Reinders, David M. J. Tax:
PATE: Proximity-Aware Time series anomaly Evaluation. CoRR abs/2405.12096 (2024) - 2023
- [j89]Stavros Makrodimitris
, Bram Pronk
, Tamim Abdelaal
, Marcel J. T. Reinders
:
An in-depth comparison of linear and non-linear joint embedding methods for bulk and single-cell multi-omics. Briefings Bioinform. 25(1) (2023) - [j88]Abdul Rehman Khan, Marcel J. T. Reinders
, Indu Khatri
:
Determining epitope specificity of T-cell receptors with transformers. Bioinform. 39(11) (2023) - [j87]Kirti Biharie, Lieke Michielsen
, Marcel J. T. Reinders
, Ahmed Mahfouz
:
Cell type matching across species using protein embeddings and transfer learning. Bioinform. 39(Supplement-1): 404-412 (2023) - [j86]J. M. Smit
, Jesse H. Krijthe
, W. M. R. Kant
, J. A. Labrecque, M. Komorowski, D. A. M. P. J. Gommers, Jasper van Bommel, Marcel J. T. Reinders
, Michel E. van Genderen
:
Causal inference using observational intensive care unit data: a scoping review and recommendations for future practice. npj Digit. Medicine 6 (2023) - [c67]Ramin Ghorbani
, Marcel J. T. Reinders
, David M. J. Tax
:
Self-Supervised PPG Representation Learning Shows High Inter-Subject Variability. ICMLT 2023: 127-132 - [c66]Soufiane Mourragui, Marco Loog, Mirrelijn M. van Nee, Mark A. van de Wiel, Marcel J. T. Reinders, Lodewyk F. A. Wessels:
Percolate: An Exponential Family JIVE Model to Design DNA-Based Predictors of Drug Response. RECOMB 2023: 120-138 - [i5]Ramin Ghorbani, Marcel J. T. Reinders, David M. J. Tax:
Personalized Anomaly Detection in PPG Data using Representation Learning and Biometric Identification. CoRR abs/2307.06380 (2023) - [i4]Michael Beekhuizen, Arman Naseri, David M. J. Tax, Ivo van der Bilt, Marcel J. T. Reinders:
Improving performance of heart rate time series classification by grouping subjects. CoRR abs/2311.13285 (2023) - 2022
- [j85]Daniele Bizzarri
, Marcel J. T. Reinders
, Marian Beekman
, P. Eline Slagboom, Erik van den Akker
:
MiMIR: R-shiny application to infer risk factors and endpoints from Nightingale Health's 1H-NMR metabolomics data. Bioinform. 38(15): 3847-3849 (2022) - [j84]Marc P. Maurits
, Ilya Korsunsky, Soumya Raychaudhuri, Shawn N. Murphy, Jordan W. Smoller, Scott T. Weiss, Thomas W. J. Huizinga, Marcel J. T. Reinders, Elizabeth W. Karlson, Erik van den Akker
, Rachel Knevel:
A framework for employing longitudinally collected multicenter electronic health records to stratify heterogeneous patient populations on disease history. J. Am. Medical Informatics Assoc. 29(5): 761-769 (2022) - [i3]Ramin Ghorbani, Marcel J. T. Reinders, David M. J. Tax:
Self-Supervised PPG Representation Learning Shows High Inter-Subject Variability. CoRR abs/2212.04902 (2022) - 2021
- [j83]Amelia Villegas-Morcillo
, Stavros Makrodimitris
, Roeland C. H. J. van Ham, Angel M. Gomez, Victoria E. Sánchez, Marcel J. T. Reinders:
Unsupervised protein embeddings outperform hand-crafted sequence and structure features at predicting molecular function. Bioinform. 37(2): 162-170 (2021) - [j82]Niccolo Tesi
, Sven van der Lee, Marc Hulsman, Henne Holstege, Marcel J. T. Reinders
:
snpXplorer: a web application to explore human SNP-associations and annotate SNP-sets. Nucleic Acids Res. 49(Webserver-Issue): 603-612 (2021) - 2020
- [j81]Stavros Makrodimitris
, Marcel J. T. Reinders, Roeland C. H. J. van Ham:
Metric learning on expression data for gene function prediction. Bioinform. 36(4): 1182-1190 (2020) - [j80]Martijn Cordes
, Karin Pike-Overzet
, Marja van Eggermond, Sandra Vloemans, Miranda R. Baert, Laura Garcia-Perez
, Frank J. T. Staal, Marcel J. T. Reinders, Erik van den Akker:
ImSpectR: R package to quantify immune repertoire diversity in spectratype and repertoire sequencing data. Bioinform. 36(6): 1930-1932 (2020) - [c65]Chibuike Ugwuoke, Zekeriya Erkin
, Marcel J. T. Reinders, Reginald L. Lagendijk:
PREDICT: Efficient Private Disease Susceptibility Testing in Direct-to-Consumer Model. CODASPY 2020: 329-340
2010 – 2019
- 2019
- [j79]Celia W. G. van Gelder
, Rob W. W. Hooft
, Merlijn N. van Rijswijk, Linda van den Berg, Ruben G. Kok, Marcel J. T. Reinders, Barend Mons, Jaap Heringa:
Bioinformatics in the Netherlands: the value of a nationwide community. Briefings Bioinform. 20(2): 540-550 (2019) - [j78]Stavros Makrodimitris
, Roeland C. H. J. van Ham, Marcel J. T. Reinders:
Improving protein function prediction using protein sequence and GO-term similarities. Bioinform. 35(7): 1116-1124 (2019) - [j77]Soufiane Mourragui, Marco Loog, Mark A. van de Wiel
, Marcel J. T. Reinders, Lodewyk F. A. Wessels:
PRECISE: a domain adaptation approach to transfer predictors of drug response from pre-clinical models to tumors. Bioinform. 35(14): i510-i519 (2019) - [j76]Tamim Abdelaal, Thomas Höllt, Vincent van Unen
, Boudewijn P. F. Lelieveldt, Frits Koning
, Marcel J. T. Reinders, Ahmed Mahfouz:
CyTOFmerge: integrating mass cytometry data across multiple panels. Bioinform. 35(20): 4063-4071 (2019) - [i2]David Laehnemann
, Johannes Köster
, Ewa Szczurek, Davis J. McCarthy
, Stephanie C. Hicks
, Mark D. Robinson
, Catalina A. Vallejos
, Niko Beerenwinkel, Kieran R. Campbell, Ahmed Mahfouz
, Luca Pinello, Pavel Skums, Alexandros Stamatakis
, Camille Stephan-Otto Attolini, Samuel Aparicio, Jasmijn A. Baaijens
, Marleen Balvert, Buys de Barbanson, Antonio Cappuccio, Giacomo Corleone, Bas E. Dutilh
, Maria Florescu
, Victor Guryev, Rens Holmer
, Katharina Jahn, Thamar Jessurun Lobo
, Emma M. Keizer, Indu Khatri
, Szymon M. Kielbasa
, Jan O. Korbel, Alexey M. Kozlov
, Tzu-Hao Kuo, Boudewijn P. F. Lelieveldt, Ion I. Mandoiu
, John C. Marioni
, Tobias Marschall
, Felix Mölder
, Amir Niknejad, Lukasz Raczkowski, Marcel J. T. Reinders, Jeroen de Ridder
, Antoine-Emmanuel Saliba
, Antonios Somarakis, Oliver Stegle, Fabian J. Theis, Huan Yang, Alex Zelikovsky, Alice C. McHardy, Benjamin J. Raphael, Sohrab P. Shah, Alexander Schönhuth:
12 Grand Challenges in Single-Cell Data Science. PeerJ Prepr. 7: e27885 (2019) - 2018
- [j75]Celia W. G. van Gelder, Rob W. W. Hooft
, Merlijn N. van Rijswijk, Linda van den Berg, Ruben G. Kok, Marcel J. T. Reinders, Barend Mons, Jaap Heringa:
Bioinformatics in the Netherlands: the value of a nationwide community. Briefings Bioinform. 19(2): 359 (2018) - [j74]Sjoerd M. H. Huisman
, Ahmed Mahfouz, Nematollah Kayhan Batmanghelich, Boudewijn P. F. Lelieveldt, Marcel J. T. Reinders:
A structural equation model for imaging genetics using spatial transcriptomics. Brain Informatics 5(2) (2018) - 2017
- [j73]Dana S. Poole, Nathalie Doorenweerd, Jaap J. Plomp, Ahmed Mahfouz
, Marcel J. T. Reinders, Louise van der Weerd
:
Continuous infusion of manganese improves contrast and reduces side effects in manganese-enhanced magnetic resonance imaging studies. NeuroImage 147: 1-9 (2017) - 2016
- [j72]Jaap Heringa, Marcel J. T. Reinders, Sanne Abeln
, Jeroen de Ridder:
ECCB 2016: The 15th European Conference on Computational Biology. Bioinform. 32(17): 389-392 (2016) - 2015
- [j71]Thies Gehrmann
, Marcel J. T. Reinders:
Proteny: discovering and visualizing statistically significant syntenic clusters at the proteome level. Bioinform. 31(21): 3437-3444 (2015) - [j70]Erdogan Taskesen
, Frank J. T. Staal, Marcel J. T. Reinders:
An integrated approach of gene expression and DNA-methylation profiles of WNT signaling genes uncovers novel prognostic markers in Acute Myeloid Leukemia. BMC Bioinform. 16(S-4): S4 (2015) - [j69]Erdogan Taskesen
, Sepideh Babaei, Marcel J. T. Reinders, Jeroen de Ridder
:
Integration of gene expression and DNA-methylation profiles improves molecular subtype classification in acute myeloid leukemia. BMC Bioinform. 16(S-4): S5 (2015) - [j68]Sepideh Babaei, Ahmed Mahfouz
, Marc Hulsman, Boudewijn P. F. Lelieveldt
, Jeroen de Ridder
, Marcel J. T. Reinders:
Hi-C Chromatin Interaction Networks Predict Co-expression in the Mouse Cortex. PLoS Comput. Biol. 11(5) (2015) - [j67]Alexey A. Gritsenko, Marc Hulsman, Marcel J. T. Reinders, Dick de Ridder:
Unbiased Quantitative Models of Protein Translation Derived from Ribosome Profiling Data. PLoS Comput. Biol. 11(8) (2015) - 2014
- [j66]Bastiaan A. van den Berg, Marcel J. T. Reinders, Johannes A. Roubos, Dick de Ridder:
SPiCE: a web-based tool for sequence-based protein classification and exploration. BMC Bioinform. 15: 93 (2014) - [c64]David M. J. Tax, Herman M. J. Sontrop, Marcel J. T. Reinders, Perry D. Moerland
:
The Effect of Aggregating Subtype Performances Depends Strongly on the Performance Measure Used. ICPR 2014: 3720-3725 - [c63]Ahmed Mahfouz, Mark N. Ziats, Owen M. Rennert, Boudewijn P. F. Lelieveldt
, Marcel J. T. Reinders:
Genomic connectivity networks based on the BrainSpan atlas of the developing human brain. Medical Imaging: Image Processing 2014: 90344G - 2013
- [j65]Dick de Ridder, Jeroen de Ridder
, Marcel J. T. Reinders:
Pattern recognition in bioinformatics. Briefings Bioinform. 14(5): 633-647 (2013) - [j64]Jurgen F. Nijkamp, Mihai Pop
, Marcel J. T. Reinders, Dick de Ridder:
Exploring variation-aware contig graphs for (comparative) metagenomics using MaryGold. Bioinform. 29(22): 2826-2834 (2013) - [j63]Sepideh Babaei, Marc Hulsman, Marcel J. T. Reinders, Jeroen de Ridder
:
Detecting recurrent gene mutation in interaction network context using multi-scale graph diffusion. BMC Bioinform. 14: 29 (2013) - [j62]Wynand Winterbach, Piet Van Mieghem, Marcel J. T. Reinders, Huijuan Wang, Dick de Ridder:
Topology of molecular interaction networks. BMC Syst. Biol. 7: 90 (2013) - [j61]Rogier J. P. van Berlo, Wynand Winterbach, Marco J. L. de Groot, Andreas Bender, Peter J. T. Verheijen
, Marcel J. T. Reinders, Dick de Ridder:
Efficient calculation of compound similarity based on maximum common subgraphs and its application to prediction of gene transcript levels. Int. J. Bioinform. Res. Appl. 9(4): 407-432 (2013) - [c62]Marc Hulsman, Jan Bot, Arjen P. de Vries
, Marcel J. T. Reinders:
Ibidas: Querying Flexible Data Structures to Explore Heterogeneous Bioinformatics Data. DILS 2013: 23-37 - [c61]Wynand Winterbach, Piet Van Mieghem, Marcel J. T. Reinders, Huijuan Wang, Dick de Ridder:
Local Topological Signatures for Network-Based Prediction of Biological Function. PRIB 2013: 23-34 - [c60]Jeroen de Ridder
, Jaap Kool, Anthony Uren
, Jan Bot, Johann de Jong, Alistair G. Rust, Anton Berns, Maarten van Lohuizen, David J. Adams, Lodewyk F. A. Wessels, Marcel J. T. Reinders:
Mutational Genomics for Cancer Pathway Discovery. PRIB 2013: 35-46 - [c59]Alexey A. Gritsenko, Marcel J. T. Reinders, Dick de Ridder:
Using Predictive Models to Engineer Biology: A Case Study in Codon Optimization. PRIB 2013: 159-171 - [c58]Thies Gehrmann
, Marco Loog, Marcel J. T. Reinders, Dick de Ridder:
Conditional Random Fields for Protein Function Prediction. PRIB 2013: 184-195 - 2012
- [j60]Alexey A. Gritsenko, Jurgen F. Nijkamp, Marcel J. T. Reinders, Dick de Ridder:
GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies. Bioinform. 28(11): 1429-1437 (2012) - [j59]Jurgen F. Nijkamp, Marcel van den Broek, Jan-Maarten A. Geertman, Marcel J. T. Reinders, Jean-Marc Daran
, Dick de Ridder:
De novo detection of copy number variation by co-assembly. Bioinform. 28(24): 3195-3202 (2012) - [c57]Jan Bot, Migiel de Vos, Sander Boele, Marcel J. T. Reinders, Joost N. Kok:
Enabling large genomic data transfers using nation-wide and international dynamic lightpaths. eScience 2012: 1-2 - 2011
- [j58]Jan Bot, Marcel J. T. Reinders:
CytoscapeRPC: a plugin to create, modify and query Cytoscape networks from scripting languages. Bioinform. 27(17): 2451-2452 (2011) - [j57]Erik van den Akker
, Bas Verbruggen, Bas T. Heijmans, Marian Beekman
, Joost N. Kok, Pieternella E. Slagboom
, Marcel J. T. Reinders:
Integrating Protein-Protein Interaction Networks with Gene-Gene Co-Expression Networks improves Gene Signatures for Classifying Breast Cancer Metastasis. J. Integr. Bioinform. 8(2) (2011) - [j56]Wynand Winterbach, Huijuan Wang, Marcel J. T. Reinders, Piet Van Mieghem, Dick de Ridder:
Metabolic network destruction: Relating topology to robustness. Nano Commun. Networks 2(2-3): 88-98 (2011) - [j55]Gineke A. ten Holt, Andrea J. van Doorn, Marcel J. T. Reinders, Emile A. Hendriks, Huib de Ridder
:
Human-inspired search for redundancy in automatic sign language recognition. ACM Trans. Appl. Percept. 8(2): 15:1-15:15 (2011) - [j54]Rogier J. P. van Berlo, Dick de Ridder, Jean-Marc Daran
, Pascale A. S. Daran-Lapujade
, Bas Teusink
, Marcel J. T. Reinders:
Predicting Metabolic Fluxes Using Gene Expression Differences As Constraints. IEEE ACM Trans. Comput. Biol. Bioinform. 8(1): 206-216 (2011) - [c56]Sepideh Babaei, Erik van den Akker, Jeroen de Ridder
, Marcel J. T. Reinders:
Integrating Protein Family Sequence Similarities with Gene Expression to Find Signature Gene Networks in Breast Cancer Metastasis. PRIB 2011: 247-259 - [e1]Marco Loog, Lodewyk F. A. Wessels, Marcel J. T. Reinders, Dick de Ridder:
Pattern Recognition in Bioinformatics - 6th IAPR International Conference, PRIB 2011, Delft, The Netherlands, November 2-4, 2011. Proceedings. Lecture Notes in Computer Science 7036, Springer 2011, ISBN 978-3-642-24854-2 [contents] - [i1]Maarten Clements, Pavel Serdyukov, Arjen P. de Vries, Marcel J. T. Reinders:
Personalised Travel Recommendation based on Location Co-occurrence. CoRR abs/1106.5213 (2011) - 2010
- [j53]Jeroen de Ridder, Alice Gerrits, Jan Bot, Gerald de Haan
, Marcel J. T. Reinders, Lodewyk F. A. Wessels:
Inferring combinatorial association logic networks in multimodal genome-wide screens. Bioinform. 26(12): 149-157 (2010) - [j52]Jurgen F. Nijkamp, Wynand Winterbach, Marcel van den Broek, Jean-Marc Daran
, Marcel J. T. Reinders, Dick de Ridder:
Integrating genome assemblies with MAIA. Bioinform. 26(18) (2010) - [j51]Marc Hulsman, Anouk Mentink, Eugene P. van Someren, Koen J. Dechering, Jan de Boer
, Marcel J. T. Reinders:
Delineation of amplification, hybridization and location effects in microarray data yields better-quality normalization. BMC Bioinform. 11: 156 (2010) - [j50]Erdogan Taskesen
, Renee Beekman
, Jeroen de Ridder
, Bas J. Wouters, Justine K. Peeters, Ivo P. Touw, Marcel J. T. Reinders, Ruud Delwel:
HAT: Hypergeometric Analysis of Tiling-arrays with application to promoter-GeneChip data. BMC Bioinform. 11: 275 (2010) - [j49]Jun Wang, Maarten Clements, Jie Yang, Arjen P. de Vries
, Marcel J. T. Reinders:
Personalization of tagging systems. Inf. Process. Manag. 46(1): 58-70 (2010) - [j48]Maarten Clements, Arjen P. de Vries
, Marcel J. T. Reinders:
The influence of personalization on tag query length in social media search. Inf. Process. Manag. 46(4): 403-412 (2010) - [j47]Christiaan Klijn
, Jan Bot, David J. Adams, Marcel J. T. Reinders, Lodewyk F. A. Wessels, Jos Jonkers
:
Identification of Networks of Co-Occurring, Tumor-Related DNA Copy Number Changes Using a Genome-Wide Scoring Approach. PLoS Comput. Biol. 6(1) (2010) - [j46]Maarten Clements, Arjen P. de Vries
, Marcel J. T. Reinders:
The task-dependent effect of tags and ratings on social media access. ACM Trans. Inf. Syst. 28(4): 21:1-21:42 (2010) - [c55]Maarten Clements, Pavel Serdyukov, Arjen P. de Vries, Marcel J. T. Reinders:
Finding Wormholes with Flickr Geotags. ECIR 2010: 658-661 - [c54]Herman M. J. Sontrop, Wim F. J. Verhaegh, René van den Ham, Marcel J. T. Reinders, Perry D. Moerland
:
Subtype specific breast cancer event prediction. GENSiPS 2010: 1-4 - [c53]Bastiaan A. van den Berg, Jurgen F. Nijkamp, Marcel J. T. Reinders, Liang Wu, Herman J. Pel, Johannes A. Roubos, Dick de Ridder:
Sequence-Based Prediction of Protein Secretion Success in Aspergillus niger. PRIB 2010: 3-14 - [c52]Maarten Clements, Pavel Serdyukov, Arjen P. de Vries
, Marcel J. T. Reinders:
Using flickr geotags to predict user travel behaviour. SIGIR 2010: 851-852
2000 – 2009
- 2009
- [j45]Theo A. Knijnenburg, Lodewyk F. A. Wessels, Marcel J. T. Reinders, Ilya Shmulevich:
Fewer permutations, more accurate P-values. Bioinform. 25(12) (2009) - [j44]Marco J. L. de Groot, Rogier J. P. van Berlo, Wouter A. van Winden, Peter J. T. Verheijen, Marcel J. T. Reinders, Dick de Ridder:
Metabolite and reaction inference based on enzyme specificities. Bioinform. 25(22): 2975-2982 (2009) - [j43]Wouter Meuleman
, Judith Y. M. N. Engwegen, Marie-Christine W. Gast, Lodewyk F. A. Wessels, Marcel J. T. Reinders:
Analysis of mass spectrometry data using sub-spectra. BMC Bioinform. 10(S-1) (2009) - [j42]Herman M. J. Sontrop, Perry D. Moerland
, René van den Ham, Marcel J. T. Reinders, Wim F. J. Verhaegh:
A comprehensive sensitivity analysis of microarray breast cancer classification under feature variability. BMC Bioinform. 10: 389 (2009) - [j41]Martin H. van Vliet, Lodewyk F. A. Wessels, Marcel J. T. Reinders:
Knowledge driven decomposition of tumor expression profiles. BMC Bioinform. 10(S-1) (2009) - [j40]Peter van Nes, Domenico Bellomo, Marcel J. T. Reinders, Dick de Ridder:
Stability from Structure: Metabolic Networks Are Unlike Other Biological Networks. EURASIP J. Bioinform. Syst. Biol. 2009 (2009) - [j39]Marc Hulsman, Marcel J. T. Reinders, Dick de Ridder:
Evolutionary Optimization of Kernel Weights Improves Protein Complex Comembership Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. 6(3): 427-437 (2009) - [c51]Herman M. J. Sontrop, René van den Ham, Perry D. Moerland
, Marcel J. T. Reinders, Wim F. J. Verhaegh:
A sensitivity analysis of microarray feature selection and classification under measurement noise. GENSiPS 2009: 1-4 - [c50]Gineke A. ten Holt
, Marcel J. T. Reinders, Emile A. Hendriks, Huib de Ridder
, Andrea J. van Doorn:
Influence of Handshape Information on Automatic Sign Language Recognition. Gesture Workshop 2009: 301-312 - [c49]Gineke A. ten Holt
, Jeroen Arendsen, Huib de Ridder
, Andrea J. Koenderink-van Doorn, Marcel J. T. Reinders, Emile A. Hendriks:
Sign language perception research for improving automatic sign language recognition. Human Vision and Electronic Imaging 2009: 72400 - [c48]Martin Wildeman, Martin Baiker
, Johan H. C. Reiber, Clemens W. G. M. Löwik, Marcel J. T. Reinders, Boudewijn P. F. Lelieveldt
:
2D/3D Registration of Micro-CT Data to Multi-View Photographs Based on a 3D Distance Map. ISBI 2009: 987-990 - [c47]Maarten Clements, Arjen P. de Vries
, Marcel J. T. Reinders:
Exploiting Positive and Negative Graded Relevance Assessments for Content Recommendation. WAW 2009: 155-166 - [p1]Jun Wang, Johan Pouwelse
, Jenneke Fokker, Arjen P. de Vries, Marcel J. T. Reinders:
Personalization on a Peer-to-Peer Television System. Handbook of Multimedia for Digital Entertainment and Arts 2009: 91-113 - 2008
- [j38]Wouter Meuleman
, Judith Y. M. N. Engwegen, Marie-Christine W. Gast, Jos H. Beijnen, Marcel J. T. Reinders, Lodewyk F. A. Wessels:
Comparison of normalisation methods for surface-enhanced laser desorption and ionisation (SELDI) time-of-flight (TOF) mass spectrometry data. BMC Bioinform. 9 (2008) - [j37]Yunlei Li
, Dick de Ridder, Marco J. L. de Groot, Marcel J. T. Reinders:
Metabolic pathway alignment between species using a comprehensive and flexible similarity measure. BMC Syst. Biol. 2: 111 (2008) - [j36]Johan A. Pouwelse
, Pawel Garbacki, Jun Wang, Arno Bakker, Jie Yang, Alexandru Iosup
, Dick H. J. Epema, Marcel J. T. Reinders, Maarten van Steen
, Henk J. Sips:
TRIBLER: a social-based peer-to-peer system. Concurr. Comput. Pract. Exp. 20(2): 127-138 (2008) - [j35]Theo A. Knijnenburg, Lodewyk F. A. Wessels, Marcel J. T. Reinders:
Creating gene set activity profiles with time-series expression data. Int. J. Bioinform. Res. Appl. 4(3): 306-323 (2008) - [j34]Jun Wang, Stephen Robertson
, Arjen P. de Vries
, Marcel J. T. Reinders:
Probabilistic relevance ranking for collaborative filtering. Inf. Retr. 11(6): 477-497 (2008) - [j33]Jun Wang, Johan A. Pouwelse
, Jenneke Fokker, Arjen P. de Vries
, Marcel J. T. Reinders:
Personalization on a peer-to-peer television system. Multim. Tools Appl. 36(1-2): 89-113 (2008) - [j32]Jeroen Lichtenauer, Emile A. Hendriks, Marcel J. T. Reinders:
Sign Language Recognition by Combining Statistical DTW and Independent Classification. IEEE Trans. Pattern Anal. Mach. Intell. 30(11): 2040-2046 (2008) - [j31]Yunlei Li
, Dick de Ridder, Robert P. W. Duin, Marcel J. T. Reinders:
Integration of prior knowledge of measurement noise in kernel density classification. Pattern Recognit. 41(1): 320-330 (2008) - [j30]Yunlei Li, Lodewyk F. A. Wessels, Dick de Ridder, Marcel J. T. Reinders:
Erratum to "Classification in the presence of class noise using a probabilistic kernel fisher method": [Pattern Recognition 40 (12) 3349-3357]. Pattern Recognit. 41(3): 1214 (2008) - [j29]Jun Wang, Arjen P. de Vries
, Marcel J. T. Reinders:
Unified relevance models for rating prediction in collaborative filtering. ACM Trans. Inf. Syst. 26(3): 16:1-16:42 (2008) - [c46]Yunlei Li, Dick de Ridder, Marco J. L. de Groot, Marcel J. T. Reinders:
Metabolic Pathway Alignment (M-Pal) Reveals Diversity and Alternatives in Conserved Networks. APBC 2008: 273-286 - [c45]Domenico Bellomo, Peter van Nes, Marcel J. T. Reinders, Dick de Ridder:
Stability cannot be derived from local structure in biochemical networks. BIONETICS 2008: 3 - [c44]Jeroen Lichtenauer, Gineke A. ten Holt
, Emile A. Hendriks, Marcel J. T. Reinders, Abbie Vanhoutte, Irene Kamp, Jeroen Arendsen, Ans J. van Doorn, Huib de Ridder
, Elmar Wenners, Mariëlle Elzenaar, Gerard Spaai, Connie Fortgens, Marjan Bruins:
A learning environment for sign language. FG 2008: 1-2 - [c43]Jeroen Lichtenauer, Emile A. Hendriks, Marcel J. T. Reinders:
Learning to recognize a sign from a single example. FG 2008: 1-6 - [c42]Theo A. Knijnenburg, Lodewyk F. A. Wessels, Marcel J. T. Reinders:
Combinatorial influence of environmental parameters on transcription factor activity. ISMB 2008: 172-181 - [c41]Maarten Clements, Arjen P. de Vries
, Marcel J. T. Reinders:
Detecting synonyms in social tagging systems to improve content retrieval. SIGIR 2008: 739-740 - [r1]Arjen P. de Vries, Marcel J. T. Reinders, Jun Wang:
Wi-Fi Walkman. Encyclopedia of Wireless and Mobile Communications 2008 - 2007
- [j28]Carmen Lai, Hugo M. Horlings, Marc J. van de Vijver
, Eric H. van Beers, Petra M. Nederlof, Lodewyk F. A. Wessels, Marcel J. T. Reinders:
SIRAC: Supervised Identification of Regions of Aberration in aCGH datasets. BMC Bioinform. 8 (2007) - [j27]Maarten Clements, Eugene P. van Someren, Theo A. Knijnenburg, Marcel J. T. Reinders:
Integration of Known Transcription Factor Binding Site Information and Gene Expression Data to Advance from Co-Expression to Co-Regulation. Genom. Proteom. Bioinform. 5(2): 86-101 (2007) - [j26]Rogier J. P. van Berlo, Lodewyk F. A. Wessels, Dick de Ridder, Marcel J. T. Reinders:
Protein Complex Prediction Using an Integrative Bioinformatics Approach. J. Bioinform. Comput. Biol. 5(4): 839-864 (2007) - [j25]Yunlei Li
, Lodewyk F. A. Wessels, Dick de Ridder, Marcel J. T. Reinders:
Classification in the presence of class noise using a probabilistic Kernel Fisher method. Pattern Recognit. 40(12): 3349-3357 (2007) - [c40]Jeroen Lichtenauer, Gineke A. ten Holt
, Emile A. Hendriks, Marcel J. T. Reinders:
Sign language detection using 3D visual cues. AVSS 2007: 435-440 - [c39]Jeroen Lichtenauer, Gineke A. ten Holt
, Marcel J. T. Reinders, Emile A. Hendriks:
Person-Independent 3D Sign Language Recognition. Gesture Workshop 2007: 69-80 - [c38]Jeroen de Ridder, Jaap Kool, Anthony Uren
, Jan Bot, Lodewyk F. A. Wessels, Marcel J. T. Reinders:
Co-occurrence analysis of insertional mutagenesis data reveals cooperating oncogenes. ISMB/ECCB (Supplement of Bioinformatics) 2007: 133-141 - [c37]Jeroen Lichtenauer, Marcel J. T. Reinders, Emile A. Hendriks:
A self-calibrating chrominance model applied to skin color detection. VISAPP (1) 2007: 115-120 - 2006
- [j24]Dick de Ridder, Frank J. T. Staal, Jacques J. M. van Dongen
, Marcel J. T. Reinders:
Maximum significance clustering of oligonucleotide microarrays. Bioinform. 22(3): 326-331 (2006) - [j23]Eugene P. van Someren, B. L. T. Vaes, W. T. Steegenga, Anneke M. Sijbers, Koen J. Dechering, Marcel J. T. Reinders:
Least absolute regression network analysis of the murine osteoblast differentiation network. Bioinform. 22(4): 477-484 (2006) - [j22]Roel G. W. Verhaak, Frank J. T. Staal, Peter J. M. Valk, Bob Löwenberg, Marcel J. T. Reinders, Dick de Ridder:
The effect of oligonucleotide microarray data pre-processing on the analysis of patient-cohort studies. BMC Bioinform. 7: 105 (2006) - [j21]Carmen Lai, Marcel J. T. Reinders, Laura J. van't Veer, Lodewyk F. A. Wessels:
A comparison of univariate and multivariate gene selection techniques for classification of cancer datasets. BMC Bioinform. 7: 235 (2006) - [j20]Jeroen de Ridder
, Anthony Uren
, Jaap Kool, Marcel J. T. Reinders, Lodewyk F. A. Wessels:
Detecting Statistically Significant Common Insertion Sites in Retroviral Insertional Mutagenesis Screens. PLoS Comput. Biol. 2(12) (2006) - [j19]Theo A. Knijnenburg, Marcel J. T. Reinders, Lodewyk F. A. Wessels:
Artifacts of Markov blanket filtering based on discretized features in small sample size applications. Pattern Recognit. Lett. 27(7): 709-714 (2006) - [j18]Carmen Lai, Marcel J. T. Reinders, Lodewyk F. A. Wessels:
Random subspace method for multivariate feature selection. Pattern Recognit. Lett. 27(10): 1067-1076 (2006) - [c36]Theo A. Knijnenburg, Lodewyk F. A. Wessels, Marcel J. T. Reinders:
Condition Transition Analysis Reveals TF Activity Related to Nutrient-Limitation-Specific Effects of Oxygen Presence in Yeast. CMSB 2006: 271-284 - [c35]Jun Wang, Arjen P. de Vries
, Marcel J. T. Reinders:
A User-Item Relevance Model for Log-Based Collaborative Filtering. ECIR 2006: 37-48 - [c34]Johan A. Pouwelse, Pawel Garbacki, Jun Wang, Arno Bakker, Jie Yang, Alexandru Iosup, Dick H. J. Epema, Marcel J. T. Reinders, Maarten van Steen, Henk J. Sips:
Tribler: A Social-Based Peer-to-Peer System. IPTPS 2006 - [c33]Jun Wang, Johan A. Pouwelse
, Reginald L. Lagendijk, Marcel J. T. Reinders:
Distributed collaborative filtering for peer-to-peer file sharing systems. SAC 2006: 1026-1030 - [c32]Jun Wang, Arjen P. de Vries, Marcel J. T. Reinders:
Unifying user-based and item-based collaborative filtering approaches by similarity fusion. SIGIR 2006: 501-508 - 2005
- [j17]Lodewyk F. A. Wessels, Marcel J. T. Reinders, Augustinus A. M. Hart, Cor J. Veenman, Hongyue Dai, Yudong D. He, Laura J. van't Veer:
A protocol for building and evaluating predictors of disease state based on microarray data. Bioinform. 21(19): 3755-3762 (2005) - [j16]Andrei Rares
, Marcel J. T. Reinders, Jan Biemond:
Constrained Texture Restoration. EURASIP J. Adv. Signal Process. 2005(17): 2758-2771 (2005) - [j15]Cor J. Veenman, Marcel J. T. Reinders:
The Nearest Subclass Classifier: A Compromise between the Nearest Mean and Nearest Neighbor Classifier. IEEE Trans. Pattern Anal. Mach. Intell. 27(9): 1417-1429 (2005) - [j14]Andrei Rares
, Marcel J. T. Reinders, Jan Biemond:
Edge-Based Image Restoration. IEEE Trans. Image Process. 14(10): 1454-1468 (2005) - [c31]Rogier J. P. van Berlo, Lodewyk F. A. Wessels, S. D. C. Martes, Marcel J. T. Reinders:
Identifying Orthologs: Cycle Splitting on the Breakpoint Graph. CSB Workshops 2005: 65-68 - [c30]Theo A. Knijnenburg, Marcel J. T. Reinders, Jean-Marc Daran
, Pascale A. S. Daran-Lapujade
, Lodewyk F. A. Wessels:
Relating transcription factors, modules of genes and cultivation conditions in Saccharomyces cerevisiae. CSB Workshops 2005: 71-72 - [c29]Dick de Ridder, Marcel J. T. Reinders, Frank J. T. Staal, Jacques J. M. van Dongen
:
Maximum signi.cance clustering of oligonucleotide microarrays. CSB Workshops 2005: 93-94 - [c28]Carmen Lai, Marcel J. T. Reinders:
Multivariate gene selection: Does it help. CSB Workshops 2005: 99-100 - [c27]Eugene P. van Someren, Marcel J. T. Reinders:
Which normalization method is best? A platform-independent biologically inspired quantitative comparison of normalization methods. CSB Workshops 2005: 135-136 - [c26]Rogier J. P. van Berlo, Lodewyk F. A. Wessels, S. D. C. Martes, Marcel J. T. Reinders:
Predicting gene function by combining expression and interaction data. CSB Workshops 2005: 166-167 - [c25]Eugene P. van Someren, B. L. T. Vaes, W. T. Steegenga, Anneke M. Sijbers, Koen J. Dechering, Marcel J. T. Reinders:
Unravelling the murine osteoblast differentiation pathway by network structure analysis using time-series microarray data. CSB Workshops 2005: 172-173 - [c24]Jeroen Lichtenauer, Emile A. Hendriks, Marcel J. T. Reinders:
Isophote Properties as Features for Object Detection. CVPR (2) 2005: 649-654 - [c23]Jun Wang, Marcel J. T. Reinders, Reginald L. Lagendijk, Johan A. Pouwelse
:
Self-organizing distributed collaborative filtering. SIGIR 2005: 659-660 - 2004
- [c22]Jeroen Lichtenauer, Marcel J. T. Reinders, Emile A. Hendriks:
Influence of The Observation Likelihood Function on Particle Filtering Performance in Tracking Applications. FGR 2004: 767-772 - [c21]Jun Wang, Marcel J. T. Reinders, Reginald L. Lagendijk, Jasper Lindenberg, Mohan S. Kankanhalli:
Video content representation on tiny devices. ICME 2004: 1711-1714 - [c20]Dick de Ridder, Marco Loog, Marcel J. T. Reinders:
Local Fisher Embedding. ICPR (2) 2004: 295-298 - 2003
- [j13]Cor J. Veenman, Marcel J. T. Reinders, Eric Backer:
Establishing motion correspondence using extended temporal scope. Artif. Intell. 145(1-2): 227-243 (2003) - [j12]Cor J. Veenman, Marcel J. T. Reinders, Eric Backer:
Motion tracking as a constrained optimization problem. Pattern Recognit. 36(9): 2049-2067 (2003) - [j11]Eugene P. van Someren, Lodewyk F. A. Wessels, Eric Backer, Marcel J. T. Reinders:
Multi-criterion optimization for genetic network modeling. Signal Process. 83(4): 763-775 (2003) - [j10]Rogier J. P. van Berlo, Eugene P. van Someren, Marcel J. T. Reinders:
Studying the Conditions for Learning Dynamic Bayesian Networks to Discover Genetic Regulatory Networks. Simul. 79(12): 689-702 (2003) - [j9]Cor J. Veenman, Marcel J. T. Reinders, Eric Backer:
A cellular coevolutionary algorithm for image segmentation. IEEE Trans. Image Process. 12(3): 304-316 (2003) - [c19]Wei Qi Yan, Mohan S. Kankanhalli, Jun Wang, Marcel J. T. Reinders:
Experiential sampling for monitoring. ETP@MM 2003: 70-72 - 2002
- [j8]Jasper P. Janssen, Michael Egmont-Petersen, Emile A. Hendriks, Marcel J. T. Reinders, Rob J. van der Geest, P. C. W. Hogendoorn
, Johan H. C. Reiber:
Scale-invariant segmentation of dynamic contrast-enhanced perfusion MR images with inherent scale selection. Comput. Animat. Virtual Worlds 13(1): 1-19 (2002) - [j7]Cor J. Veenman, Marcel J. T. Reinders, Eric Backer:
A Maximum Variance Cluster Algorithm. IEEE Trans. Pattern Anal. Mach. Intell. 24(9): 1273-1280 (2002) - [c18]Andrei Rares, Marcel J. T. Reinders, Jan Biemond:
Restoration of films affected by partial color artefacts. EUSIPCO 2002: 1-4 - [c17]Andrei Rares, Marcel J. T. Reinders, Jan Biemond:
Image sequence restoration in the presence of pathological motion and severe artifacts. ICASSP 2002: 3365-3368 - [c16]Andrei Rares, Marcel J. T. Reinders, Reginald L. Lagendijk, Jan Biemond:
A spatiotemporal image sequence restoration algorithm. ICIP (2) 2002: 857-860 - 2001
- [j6]J. P. De Knecht, John G. M. Schavemaker, Marcel J. T. Reinders, Albert M. Vossepoel:
Utility map reconstruction. Int. J. Geogr. Inf. Sci. 15(1): 7-26 (2001) - [j5]Cor J. Veenman, Marcel J. T. Reinders, Eric Backer:
Resolving Motion Correspondence for Densely Moving Points. IEEE Trans. Pattern Anal. Mach. Intell. 23(1): 54-72 (2001) - [c15]Resmana Lim
, Marcel J. T. Reinders:
Facial Landmarks Localization Based on Fuzzy and Gabor Wavelet Graph Matching. FUZZ-IEEE 2001: 683-686 - [c14]Jan C. A. van der Lubbe, Eugene P. van Someren, Marcel J. T. Reinders:
Dating and Authentication of Rembrandt's Etchings with the Help of Computational Intelligence. ICHIM (1) 2001: 485-492 - [c13]Andrei Rares, Marcel J. T. Reinders, Jan Biemond:
Complex event classification in degraded image sequences. ICIP (1) 2001: 253-256 - [c12]Lodewyk F. A. Wessels, Eugene P. van Someren, Marcel J. T. Reinders:
A Comparison of Genetic Network Models. Pacific Symposium on Biocomputing 2001: 508-519 - [c11]Peter J. van der Veen, Lodewyk F. A. Wessels, J. W. Slootstra, R. H. Meloen, Marcel J. T. Reinders, Johannes Hellendoorn:
Determination of Binding Amino Acids Based on Random Peptide Array Screening Data. WABI 2001: 264-277 - 2000
- [j4]John G. M. Schavemaker, Marcel J. T. Reinders, Jan J. Gerbrands, Eric Backer:
Image sharpening by morphological filtering. Pattern Recognit. 33(6): 997-1012 (2000) - [j3]P. J. H. Bronkorsta, Marcel J. T. Reinders, Emile A. Hendriks, J. Grimbergen, Rob M. Heethaar, G. J. Brakenhoff:
On-line detection of red blood cell shape using deformable templates. Pattern Recognit. Lett. 21(5): 413-424 (2000) - [c10]Andrei Rares, Marcel J. T. Reinders:
Object Tracking by Adaptive Modeling. ICIP 2000: 74-77 - [c9]Bang Jun Lei, Emile A. Hendriks, Marcel J. T. Reinders:
Detecting Generic Low-Level Features in Images. ICPR 2000: 3979-3982 - [c8]Ilse Ravyse, Hichem Sahli, Jan Cornelis, Marcel J. T. Reinders:
Eye Activity Detection and Recognition Using Morphological Scale-Space Decomposition. ICPR 2000: 5080-5083 - [c7]Eugene P. van Someren, Lodewyk F. A. Wessels, Marcel J. T. Reinders:
Linear Modeling of Genetic Networks from Experimental Data. ISMB 2000: 355-366 - [c6]Cor J. Veenman, Marcel J. T. Reinders, Eric Backer:
Competitive Segmentation: A Struggle for Image Space. PPSN 2000: 517-526
1990 – 1999
- 1999
- [j2]Lodewyk F. A. Wessels, Eugene P. van Someren, Marcel J. T. Reinders:
Information processing for intelligent molecular diagnosis. Pattern Recognit. Lett. 20(11-13): 1457-1465 (1999) - 1998
- [c5]Cor J. Veenman, Emile A. Hendriks, Marcel J. T. Reinders:
A Fast and Robust Point Tracking Algorithm. ICIP (3) 1998: 653-657 - 1997
- [c4]John G. M. Schavemaker, Marcel J. T. Reinders:
Information Fusion for Conflict Resolution in Map Interpretation. GREC 1997: 231-242 - 1996
- [c3]Marcel J. T. Reinders, R. W. C. Koch, Jan J. Gerbrands:
Locating Facial Features in Image Sequences using Neural Networks. FG 1996: 230-235 - 1995
- [j1]Marcel J. T. Reinders, P. J. L. van Beek, Bülent Sankur, Jan C. A. van der Lubbe:
Facial feature localization and adaptation of a generic face model for model-based coding. Signal Process. Image Commun. 7(1): 57-74 (1995) - 1993
- [c2]Marcel J. T. Reinders, F. A. Odijk, Jan C. A. van der Lubbe, Jan J. Gerbrands:
Tracking of global motion and facial expressions of a human face in image sequences. VCIP 1993 - 1992
- [c1]Marcel J. T. Reinders, Bülent Sankur, Jan C. A. van der Lubbe:
Transformation of a general 3D facial model to an actual scene face. ICPR (3) 1992: 75-78
Coauthor Index
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