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2020 – today
- 2021
[j13]Lucille Lopez-Delisle
, Leily Rabbani, Joachim Wolff, Vivek Bhardwaj, Rolf Backofen, Björn A. Grüning, Fidel Ramírez, Thomas Manke:
pyGenomeTracks: reproducible plots for multivariate genomic datasets. Bioinform. 37(3): 422-423 (2021)- 2020
- [j12]Joachim Wolff, Leily Rabbani, Ralf Gilsbach, Gautier Richard, Thomas Manke, Rolf Backofen, Björn A. Grüning:
Galaxy HiCExplorer 3: a web server for reproducible Hi-C, capture Hi-C and single-cell Hi-C data analysis, quality control and visualization. Nucleic Acids Res. 48(Webserver-Issue): W177-W184 (2020)
2010 – 2019
- 2019
- [j11]Evgeny Anatskiy, Devon Patrick Ryan, Björn A. Grüning, Laura Arrigoni, Thomas Manke, Ulrike Bönisch:
Parkour LIMS: high-quality sample preparation in next generation sequencing. Bioinform. 35(8): 1422-1424 (2019) - [j10]Vivek Bhardwaj, Steffen Heyne, Katarzyna Sikora, Leily Rabbani, Michael Rauer, Fabian Kilpert, Andreas S. Richter, Devon Patrick Ryan, Thomas Manke:
snakePipes: facilitating flexible, scalable and integrative epigenomic analysis. Bioinform. 35(22): 4757-4759 (2019) - 2018
- [j9]Joachim Wolff, Vivek Bhardwaj, Stephan Nothjunge, Gautier Richard, Gina Renschler, Ralf Gilsbach, Thomas Manke, Rolf Backofen, Fidel Ramírez, Björn A. Grüning:
Galaxy HiCExplorer: a web server for reproducible Hi-C data analysis, quality control and visualization. Nucleic Acids Res. 46(Webserver-Issue): W11-W16 (2018) - 2017
- [j8]Tugçe Aktas, Ibrahim Avsar Ilik, Daniel Maticzka, Vivek Bhardwaj, Cecilia Pessoa Rodrigues, Gerhard Mittler, Thomas Manke, Rolf Backofen, Asifa Akhtar:
DHX9 suppresses RNA processing defects originating from the Alu invasion of the human genome. Nat. 544(7648): 115-119 (2017) - 2016
- [j7]Fidel Ramírez, Devon Patrick Ryan, Björn A. Grüning, Vivek Bhardwaj, Fabian Kilpert, Andreas S. Richter, Steffen Heyne, Friederike Dündar, Thomas Manke:
deepTools2: a next generation web server for deep-sequencing data analysis. Nucleic Acids Res. 44(Webserver-Issue): W160-W165 (2016) - 2014
- [j6]Fidel Ramírez, Friederike Dündar, Sarah Diehl, Björn A. Grüning, Thomas Manke:
deepTools: a flexible platform for exploring deep-sequencing data. Nucleic Acids Res. 42(Webserver-Issue): 187-191 (2014) - 2013
- [j5]Maxim Barenboim, Thomas Manke:
ChroMoS: an integrated web tool for SNP classification, prioritization and functional interpretation. Bioinform. 29(17): 2197-2198 (2013)
2000 – 2009
- 2009
- [j4]Helge G. Roider, Thomas Manke, Sean O'Keeffe, Martin Vingron, Stefan A. Haas:
PASTAA: identifying transcription factors associated with sets of co-regulated genes. Bioinform. 25(4): 435-442 (2009) - 2008
- [j3]Ho-Joon Lee, Thomas Manke, Ricardo Bringas, Martin Vingron:
Prioritization of gene regulatory interactions from large-scale modules in yeast. BMC Bioinform. 9 (2008) - [j2]Thomas Manke, Helge G. Roider, Martin Vingron:
Statistical Modeling of Transcription Factor Binding Affinities Predicts Regulatory Interactions. PLoS Comput. Biol. 4(3) (2008) - 2007
- [j1]Helge G. Roider, Aditi Kanhere, Thomas Manke, Martin Vingron:
Predicting transcription factor affinities to DNA from a biophysical model. Bioinform. 23(2): 134-141 (2007) - 2004
- [c1]Thomas Manke, Christoph Dieterich, Martin Vingron:
Detecting Functional Modules of Transcription Factor Binding Sites in the Human Genome. Regulatory Genomics 2004: 14-21
Coauthor Index
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